{"id":"https://openalex.org/W7225822624","doi":"https://doi.org/10.21203/rs.3.rs-11542179/v1","title":"Fabaceae pan-centromere analysis traces the evolutionary origin of centromeric satellites with widespread solo-LTR transition","display_name":"Fabaceae pan-centromere analysis traces the evolutionary origin of centromeric satellites with widespread solo-LTR transition","publication_year":2026,"publication_date":"2026-11-11","ids":{"openalex":"https://openalex.org/W7225822624","doi":"https://doi.org/10.21203/rs.3.rs-11542179/v1"},"language":"en","primary_location":{"id":"doi:10.21203/rs.3.rs-11542179/v1","doi":"https://doi.org/10.21203/rs.3.rs-11542179/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-11542179/v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.21203/rs.3.rs-11542179/v1","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5161461928","display_name":"Bin Guo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Guo","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135511727","display_name":"Rongxing Liu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rongxing Liu","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053582114","display_name":"Weikai Chen","orcid":"https://orcid.org/0009-0009-8125-3993","observed_orcids":["https://orcid.org/0009-0009-8125-3993"]},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Weikai Chen","raw_affiliation_strings":["Peking University"],"raw_orcid":"https://orcid.org/0009-0009-8125-3993","affiliations":[{"raw_affiliation_string":"Peking University","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135460601","display_name":"Gang Zhou","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gang Zhou","raw_affiliation_strings":["Xinjiang Key Laboratory of Drug Quality Control/Xinjiang Institute for Drug Control"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang Key Laboratory of Drug Quality Control/Xinjiang Institute for Drug Control","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159592467","display_name":"Jie Feng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Feng","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161455210","display_name":"Huan Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huan Wang","raw_affiliation_strings":["Northwest University","Peking University Institute of Advanced Agricultural Sciences/Shandong Laboratory of Advanced Agricultural Sciences in Weifang"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Peking University Institute of Advanced Agricultural Sciences/Shandong Laboratory of Advanced Agricultural Sciences in Weifang","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161484261","display_name":"Xizhen Yue","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xizhen Yue","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161462990","display_name":"Ke Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ke Wang","raw_affiliation_strings":["Peking University Institute of Advanced Agricultural Sciences"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peking University Institute of Advanced Agricultural Sciences","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161453130","display_name":"Rui Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui Li","raw_affiliation_strings":["Peking University Institute of Advanced Agricultural Sciences/Shandong Laboratory of Advanced Agricultural Sciences in Weifang"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Peking University Institute of Advanced Agricultural Sciences/Shandong Laboratory of Advanced Agricultural Sciences in Weifang","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161458101","display_name":"Jianing Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianing Wang","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161423954","display_name":"Tianzi Yao","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianzi Yao","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124245167","display_name":"Yongjie Qin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongjie Qin","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135452831","display_name":"Hong Tao","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hong Tao","raw_affiliation_strings":["Xinjiang Key Laboratory of Drug Quality Control/Xinjiang Institute for Drug Control"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Xinjiang Key Laboratory of Drug Quality Control/Xinjiang Institute for Drug Control","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100568293","display_name":"Yirui Zhao","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yirui Zhao","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161484535","display_name":"He Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]},{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"He Wang","raw_affiliation_strings":["Northwest University","Peking University Institute of Advanced Agricultural Sciences/Shandong Laboratory of Advanced Agricultural Sciences in Weifang"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]},{"raw_affiliation_string":"Peking University Institute of Advanced Agricultural Sciences/Shandong Laboratory of Advanced Agricultural Sciences in Weifang","institution_ids":["https://openalex.org/I20231570"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161481635","display_name":"Yanping Fu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yanping Fu","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161446667","display_name":"Wei He","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I37802460","display_name":"Northwest University","ror":"https://ror.org/00z3td547","country_code":"CN","type":"education","lineage":["https://openalex.org/I37802460"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wei He","raw_affiliation_strings":["Northwest University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Northwest University","institution_ids":["https://openalex.org/I37802460"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026487938","display_name":"Li Guo","orcid":"https://orcid.org/0000-0001-6100-3481","observed_orcids":["https://orcid.org/0000-0001-6100-3481"]},"institutions":[{"id":"https://openalex.org/I20231570","display_name":"Peking University","ror":"https://ror.org/02v51f717","country_code":"CN","type":"education","lineage":["https://openalex.org/I20231570"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Guo","raw_affiliation_strings":["Peking University"],"raw_orcid":"https://orcid.org/0000-0001-6100-3481","affiliations":[{"raw_affiliation_string":"Peking University","institution_ids":["https://openalex.org/I20231570"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5161461928"],"corresponding_institution_ids":["https://openalex.org/I37802460"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12568","display_name":"Plant Taxonomy and Phylogenetics","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[],"concepts":[{"id":"https://openalex.org/C2780900450","wikidata":"https://www.wikidata.org/wiki/Q44448","display_name":"Fabaceae","level":2,"score":0.8666999936103821},{"id":"https://openalex.org/C63491729","wikidata":"https://www.wikidata.org/wiki/Q14762596","display_name":"Centromere","level":4,"score":0.8544999957084656},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6735000014305115},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5559999942779541},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4828000068664551},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.35690000653266907},{"id":"https://openalex.org/C30481170","wikidata":"https://www.wikidata.org/wiki/Q37748","display_name":"Chromosome","level":3,"score":0.3206999897956848},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.310699999332428},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.3052999973297119},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2833999991416931},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.27079999446868896}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21203/rs.3.rs-11542179/v1","doi":"https://doi.org/10.21203/rs.3.rs-11542179/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-11542179/v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.21203/rs.3.rs-11542179/v1","doi":"https://doi.org/10.21203/rs.3.rs-11542179/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-11542179/v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Abstract":[0],"Centromeres":[1],"are":[2],"essential":[3],"for":[4,58,143],"chromosome":[5],"segregation,":[6],"but":[7],"their":[8],"diversity":[9],"and":[10,53,108,124,155,166],"evolution":[11,161],"across":[12,24],"Fabaceae":[13,51,152],"remain":[14],"poorly":[15],"understood.":[16],"Here,":[17],"we":[18,70,111],"present":[19],"a":[20,55,64,72,140,167],"family-wide":[21],"pan-centromere":[22],"dissection":[23],"20":[25],"legume":[26,128],"genomes":[27],"using":[28],"one":[29],"Rosaceae":[30],"genome":[31],"as":[32,76,139],"outgroup,":[33],"incorporating":[34],"our":[35,148],"complete,":[36],"gap-free":[37],"assemblies":[38],"of":[39,90,135,162,170],"two":[40],"Glycyrrhiza":[41],"genomes.":[42],"We":[43],"dissect":[44],"251":[45],"(215":[46],"gap-free)":[47],"centromeres":[48,163],"from":[49,126],"18":[50,127],"members":[52],"establish":[54],"'solo-LTR-driven'":[56],"model":[57],"centromere":[59,153],"evolution.":[60],"By":[61,85],"developing":[62],"LTRtrace,":[63],"pipeline":[65],"to":[66],"annotate":[67],"centromeric":[68,101],"solo-LTRs,":[69],"uncover":[71],"'molecular":[73],"fossil'":[74],"designated":[75],"'satLTR'":[77],"where":[78],"single":[79],"solo-LTRs":[80,97],"encapsulate":[81],"multiple":[82],"satellite":[83,102],"repeats.":[84],"capturing":[86],"the":[87,132,151,160],"intermediate":[88],"states":[89],"LTR-to-satellite":[91],"conversion,":[92],"such":[93],"fossil":[94],"demonstrates":[95],"how":[96],"expand":[98],"into":[99,159],"massive":[100],"arrays":[103],"via":[104,118],"local":[105],"tandem":[106],"amplification":[107],"homogenization.":[109],"Finally,":[110],"build":[112],"an":[113],"interactive":[114],"platform":[115],"(solo-LTR":[116],"database)":[117],"integrating":[119],"nearly":[120],"complete":[121],"genomic":[122],"solo-LTR":[123],"LTR-RTs":[125],"species.,":[129],"which":[130],"enables":[131],"zero-code":[133],"exploration":[134],"centromere-enriched":[136],"repeats,":[137],"serving":[138],"crucial":[141],"resource":[142],"designing":[144],"synthetic":[145],"centromeres.":[146],"Together,":[147],"study":[149],"reveals":[150],"diversity,":[154],"provides":[156],"mechanistic":[157],"insights":[158],"in":[164],"legumes":[165],"broad":[168],"range":[169],"plant":[171],"lineages.":[172]},"counts_by_year":[],"updated_date":"2026-11-12T12:28:57.059296","created_date":"2026-11-12T00:00:00"}
