{"id":"https://openalex.org/W7225645986","doi":"https://doi.org/10.64898/2026.11.06.764911","title":"Transcriptome profiling reveals gene regulatory network governing seed size in Brassica napus","display_name":"Transcriptome profiling reveals gene regulatory network governing seed size in Brassica napus","publication_year":2026,"publication_date":"2026-11-09","ids":{"openalex":"https://openalex.org/W7225645986","doi":"https://doi.org/10.64898/2026.11.06.764911"},"language":"en","primary_location":{"id":"doi:10.64898/2026.11.06.764911","doi":"https://doi.org/10.64898/2026.11.06.764911","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764911","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.64898/2026.11.06.764911","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5004812631","display_name":"Yedomon Ange Bovys Zoclanclounon","orcid":"https://orcid.org/0000-0003-2781-0778","observed_orcids":["https://orcid.org/0000-0003-2781-0778"]},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Yedomon Ange Bovys Zoclanclounon","raw_affiliation_strings":["Rothamsted Research;"],"raw_orcid":"https://orcid.org/0000-0003-2781-0778","affiliations":[{"raw_affiliation_string":"Rothamsted Research;","institution_ids":["https://openalex.org/I2799553609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029528350","display_name":"Laura Siles","orcid":"https://orcid.org/0000-0003-2264-9436","observed_orcids":["https://orcid.org/0000-0003-2264-9436"]},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Laura Siles","raw_affiliation_strings":["Rothamsted Research;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rothamsted Research;","institution_ids":["https://openalex.org/I2799553609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056322775","display_name":"Hugh C. Woolfenden","orcid":"https://orcid.org/0000-0002-9800-7862","observed_orcids":["https://orcid.org/0000-0002-9800-7862"]},"institutions":[{"id":"https://openalex.org/I100288624","display_name":"John Innes Centre","ror":"https://ror.org/055zmrh94","country_code":"GB","type":"facility","lineage":["https://openalex.org/I100288624","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Hugh Woolfenden","raw_affiliation_strings":["John Innes Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"John Innes Centre","institution_ids":["https://openalex.org/I100288624"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161316112","display_name":"Richard James Morris","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I100288624","display_name":"John Innes Centre","ror":"https://ror.org/055zmrh94","country_code":"GB","type":"facility","lineage":["https://openalex.org/I100288624","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard James Morris","raw_affiliation_strings":["John Innes Centre"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"John Innes Centre","institution_ids":["https://openalex.org/I100288624"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021248662","display_name":"Smita Kurup","orcid":"https://orcid.org/0000-0003-1035-7065","observed_orcids":["https://orcid.org/0000-0003-1035-7065"]},"institutions":[{"id":"https://openalex.org/I2799553609","display_name":"Rothamsted Research","ror":"https://ror.org/0347fy350","country_code":"GB","type":"facility","lineage":["https://openalex.org/I2799553609","https://openalex.org/I2799693246","https://openalex.org/I4210087105"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Smita Kurup","raw_affiliation_strings":["Rothamsted Research;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rothamsted Research;","institution_ids":["https://openalex.org/I2799553609"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9140999913215637,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.9140999913215637,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12566","display_name":"Nitrogen and Sulfur Effects on Brassica","score":0.03959999978542328,"subfield":{"id":"https://openalex.org/subfields/1102","display_name":"Agronomy and Crop Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11927","display_name":"Plant Reproductive Biology","score":0.014600000344216824,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/seed-size","display_name":"seed size","score":0.8510000109672546},{"id":"https://openalex.org/keywords/brassica-napus","display_name":"Brassica napus","score":0.9879999756813049},{"id":"https://openalex.org/keywords/gene-regulatory-networks","display_name":"gene regulatory networks","score":0.8299999833106995},{"id":"https://openalex.org/keywords/gene-expression-profiling","display_name":"gene expression profiling","score":0.7049999833106995},{"id":"https://openalex.org/keywords/polyploidy","display_name":"polyploidy","score":0.8600000143051147},{"id":"https://openalex.org/keywords/seed-development","display_name":"seed development","score":0.6819999814033508},{"id":"https://openalex.org/keywords/seed-coat","display_name":"seed coat","score":0.8790000081062317},{"id":"https://openalex.org/keywords/embryo","display_name":"embryo","score":0.859000027179718},{"id":"https://openalex.org/keywords/endosperm","display_name":"endosperm","score":1.0},{"id":"https://openalex.org/keywords/abi5","display_name":"ABI5","score":0.7919999957084656},{"id":"https://openalex.org/keywords/bri1","display_name":"BRI1","score":0.9980000257492065},{"id":"https://openalex.org/keywords/differential-gene-expression","display_name":"differential gene expression","score":0.9049999713897705},{"id":"https://openalex.org/keywords/oilseed-crops","display_name":"oilseed crops","score":0.5720000267028809},{"id":"https://openalex.org/keywords/seed-yield","display_name":"seed yield","score":0.7110000252723694}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8274999856948853},{"id":"https://openalex.org/C2776747608","wikidata":"https://www.wikidata.org/wiki/Q58677","display_name":"Brassica","level":2,"score":0.781000018119812},{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.734000027179718},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.6935999989509583},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6309000253677368},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.5626999735832214},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5098999738693237},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.492000013589859},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.44749999046325684},{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.4339999854564667},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3856000006198883},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.37389999628067017},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.36039999127388},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.34950000047683716},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.3278000056743622},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.3239000141620636},{"id":"https://openalex.org/C18431079","wikidata":"https://www.wikidata.org/wiki/Q1502169","display_name":"Gene expression profiling","level":4,"score":0.3199999928474426},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.3100999891757965},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.2955000102519989},{"id":"https://openalex.org/C134121241","wikidata":"https://www.wikidata.org/wiki/Q899301","display_name":"Yield (engineering)","level":2,"score":0.2937000095844269},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.2897999882698059},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.2597000002861023},{"id":"https://openalex.org/C2986587452","wikidata":"https://www.wikidata.org/wiki/Q938438","display_name":"Statistical analysis","level":2,"score":0.25380000472068787}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.11.06.764911","doi":"https://doi.org/10.64898/2026.11.06.764911","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764911","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.11.06.764911","doi":"https://doi.org/10.64898/2026.11.06.764911","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764911","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.875}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7214111982","https://openalex.org/W4414247425","https://openalex.org/W4415518359","https://openalex.org/W4213447758","https://openalex.org/W4284977557","https://openalex.org/W2791487207","https://openalex.org/W3030390722","https://openalex.org/W4386897830","https://openalex.org/W3213737925","https://openalex.org/W3203107525"],"abstract_inverted_index":{"Seed":[0],"size":[1,29,47,100,155,183],"is":[2],"a":[3,51],"critical":[4],"trait":[5],"influencing":[6],"yield":[7,185],"and":[8,24,62,64,73,84,110,119,140,184],"quality":[9],"in":[10,33,98,156,186],"oilseed":[11,188],"crops":[12],"such":[13,36,128],"as":[14,37,122,124,129],"Brassica":[15],"napus":[16,39,80,86,158],".":[17,40,142,159],"Despite":[18],"their":[19],"economic":[20],"importance,":[21],"the":[22,69,150],"genetic":[23],"molecular":[25],"mechanisms":[26],"regulating":[27],"seed":[28,46,67,70,99,154,168,182],"remain":[30],"unclear,":[31],"particularly":[32],"polyploid":[34,187],"species,":[35],"B.":[38,79,85,157],"To":[41],"deepen":[42],"our":[43,165],"understanding":[44,148],"of":[45,149,167],"regulation,":[48],"we":[49],"performed":[50,92],"comprehensive":[52],"transcriptomic":[53],"analysis":[54,77],"across":[55],"four":[56],"developmental":[57],"stages":[58],"(heart,":[59],"torpedo,":[60],"green,":[61],"mature)":[63],"three":[65],"distinct":[66],"organs:":[68],"coat,":[71],"embryo,":[72],"endosperm.":[74],"Differential":[75],"expression":[76],"between":[78],"var.":[81],"Zhongshuang":[82],"(ZS11)":[83],"cv.":[87],"Ragged":[88],"Jack":[89],"(RJ)":[90],"was":[91],"to":[93],"uncover":[94],"regulatory":[95,107,151],"networks":[96,108,152],"involved":[97],"control.":[101],"Our":[102],"results":[103],"uncovered":[104],"dynamic":[105],"gene":[106],"(GRNs)":[109],"pinpointed":[111],"key":[112],"regulators,":[113],"including":[114],"well-established":[115],"factors":[116],"like":[117],"ABI5":[118],"BRI1":[120],",":[121,131,133,135,137,139],"well":[123],"novel":[125],"candidate":[126],"genes":[127],"KNAT5":[130],"ARF11":[132],"SUS2":[134],"UGT72B1":[136],"UGT89A2":[138],"SBT1.7":[141],"The":[143],"present":[144],"research":[145],"provides":[146],"an":[147],"governing":[153],"These":[160],"findings":[161],"not":[162],"only":[163],"enhance":[164],"knowledge":[166],"biology":[169],"but":[170],"also":[171],"offer":[172],"valuable":[173],"resources":[174],"for":[175],"future":[176],"breeding":[177],"strategies":[178],"aimed":[179],"at":[180],"optimizing":[181],"crops.":[189]},"counts_by_year":[],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-11-10T00:00:00"}
