{"id":"https://openalex.org/W7225637424","doi":"https://doi.org/10.64898/2026.11.06.764806","title":"Genomic signatures of long-term selection in the Langhill dairy herd: the power of a five-decade experiment for sustainable dairy cattle breeding","display_name":"Genomic signatures of long-term selection in the Langhill dairy herd: the power of a five-decade experiment for sustainable dairy cattle breeding","publication_year":2026,"publication_date":"2026-11-09","ids":{"openalex":"https://openalex.org/W7225637424","doi":"https://doi.org/10.64898/2026.11.06.764806"},"language":"en","primary_location":{"id":"doi:10.64898/2026.11.06.764806","doi":"https://doi.org/10.64898/2026.11.06.764806","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764806","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764806.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764806.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5063022035","display_name":"Rajiv K. Sharma","orcid":"https://orcid.org/0000-0003-3488-8688","observed_orcids":["https://orcid.org/0000-0003-3488-8688"]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rajiv Sharma","raw_affiliation_strings":["Scotland's Rural College;;"],"raw_orcid":"https://orcid.org/0000-0003-3488-8688","affiliations":[{"raw_affiliation_string":"Scotland's Rural College;;","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125593781","display_name":"Mike Coffey","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mike Coffey","raw_affiliation_strings":["School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037715520","display_name":"Georgios Banos","orcid":"https://orcid.org/0000-0002-7674-858X","observed_orcids":["https://orcid.org/0000-0002-7674-858X"]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Georgios Banos","raw_affiliation_strings":["School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004666230","display_name":"Raphael Mrode","orcid":"https://orcid.org/0000-0003-1964-5653","observed_orcids":["https://orcid.org/0000-0003-1964-5653"]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Raphael Mrode","raw_affiliation_strings":["School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5151849284","display_name":"Bingjie Li","orcid":"https://orcid.org/0000-0002-8528-1889","observed_orcids":["https://orcid.org/0000-0002-8528-1889"]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bingjie Li","raw_affiliation_strings":["School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109344020","display_name":"Ian Archibald","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ian Archibald","raw_affiliation_strings":["School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058891795","display_name":"E. Wall","orcid":"https://orcid.org/0000-0002-7072-5758","observed_orcids":["https://orcid.org/0000-0002-7072-5758"]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eileen Wall","raw_affiliation_strings":["School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Veterinary Medicine and Biosciences (SVMB), Scotland's Rural College (SRUC), Peter Wilson Building, Edinburgh, UK","institution_ids":["https://openalex.org/I260719752"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018886285","display_name":"Wayne Powell","orcid":"https://orcid.org/0000-0002-5612-3398","observed_orcids":["https://orcid.org/0000-0002-5612-3398"]},"institutions":[{"id":"https://openalex.org/I260719752","display_name":"Scotland's Rural College","ror":"https://ror.org/044e2ja82","country_code":"GB","type":"education","lineage":["https://openalex.org/I260719752"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Wayne Powell","raw_affiliation_strings":["Scotland's Rural College;;"],"raw_orcid":"https://orcid.org/0000-0002-5612-3398","affiliations":[{"raw_affiliation_string":"Scotland's Rural College;;","institution_ids":["https://openalex.org/I260719752"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5018886285"],"corresponding_institution_ids":["https://openalex.org/I260719752"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dairy-cattle-breeding","display_name":"dairy cattle breeding","score":0.640999972820282},{"id":"https://openalex.org/keywords/inbreeding","display_name":"inbreeding","score":0.7429999709129333},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"effective population size","score":0.7639999985694885},{"id":"https://openalex.org/keywords/runs-of-homozygosity","display_name":"runs of homozygosity","score":0.9259999990463257},{"id":"https://openalex.org/keywords/autozygosity","display_name":"autozygosity","score":0.9350000023841858},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"linkage disequilibrium","score":0.9570000171661377},{"id":"https://openalex.org/keywords/genetic-differentiation","display_name":"genetic differentiation","score":0.47999998927116394},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.4819999933242798}],"concepts":[{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.765500009059906},{"id":"https://openalex.org/C2777782036","wikidata":"https://www.wikidata.org/wiki/Q38978","display_name":"Inbreeding","level":3,"score":0.729200005531311},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6977999806404114},{"id":"https://openalex.org/C2776116246","wikidata":"https://www.wikidata.org/wiki/Q21067469","display_name":"Runs of Homozygosity","level":5,"score":0.5687999725341797},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5551999807357788},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.5540000200271606},{"id":"https://openalex.org/C2778890363","wikidata":"https://www.wikidata.org/wiki/Q550479","display_name":"Genetic gain","level":4,"score":0.5324000120162964},{"id":"https://openalex.org/C2776977481","wikidata":"https://www.wikidata.org/wiki/Q2915","display_name":"Dairy cattle","level":2,"score":0.5127999782562256},{"id":"https://openalex.org/C3641667","wikidata":"https://www.wikidata.org/wiki/Q1295959","display_name":"Effective population size","level":4,"score":0.47119998931884766},{"id":"https://openalex.org/C2775902999","wikidata":"https://www.wikidata.org/wiki/Q3562660","display_name":"Control line","level":3,"score":0.42640000581741333},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.42410001158714294},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.40369999408721924},{"id":"https://openalex.org/C2992444039","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Genomic selection","level":5,"score":0.4009999930858612},{"id":"https://openalex.org/C198352243","wikidata":"https://www.wikidata.org/wiki/Q37105","display_name":"Line (geometry)","level":2,"score":0.35339999198913574},{"id":"https://openalex.org/C112964050","wikidata":"https://www.wikidata.org/wiki/Q103459","display_name":"Livestock","level":2,"score":0.32829999923706055},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.3118000030517578},{"id":"https://openalex.org/C2776473694","wikidata":"https://www.wikidata.org/wiki/Q4950555","display_name":"Bovine genome","level":4,"score":0.3107999861240387},{"id":"https://openalex.org/C22593422","wikidata":"https://www.wikidata.org/wiki/Q3242583","display_name":"Pedigree chart","level":3,"score":0.30820000171661377},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.3043999969959259},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.30300000309944153},{"id":"https://openalex.org/C2016182","wikidata":"https://www.wikidata.org/wiki/Q227675","display_name":"Animal breeding","level":2,"score":0.2906999886035919},{"id":"https://openalex.org/C2778733383","wikidata":"https://www.wikidata.org/wiki/Q991030","display_name":"Brown Swiss","level":3,"score":0.27000001072883606},{"id":"https://openalex.org/C2780505807","wikidata":"https://www.wikidata.org/wiki/Q1208989","display_name":"Beef cattle","level":2,"score":0.26829999685287476},{"id":"https://openalex.org/C12558332","wikidata":"https://www.wikidata.org/wiki/Q995745","display_name":"Selective breeding","level":2,"score":0.2646999955177307},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.25850000977516174},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.25189998745918274}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.11.06.764806","doi":"https://doi.org/10.64898/2026.11.06.764806","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764806","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764806.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.11.06.764806","doi":"https://doi.org/10.64898/2026.11.06.764806","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764806","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764806.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.875,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320312695","display_name":"Rural and Environment Science and Analytical Services Division","ror":"https://ror.org/02hrqhj53"},{"id":"https://openalex.org/F4320329383","display_name":"Scotland\u2019s Rural College","ror":"https://ror.org/044e2ja82"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225637424.pdf","grobid_xml":"https://content.openalex.org/works/W7225637424.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1513158650","https://openalex.org/W1586824462","https://openalex.org/W1853535253","https://openalex.org/W1967130466","https://openalex.org/W1984390786","https://openalex.org/W1989282711","https://openalex.org/W1997476591","https://openalex.org/W2004015094","https://openalex.org/W2024438347","https://openalex.org/W2048857485","https://openalex.org/W2058830308","https://openalex.org/W2064552552","https://openalex.org/W2099085143","https://openalex.org/W2102213696","https://openalex.org/W2102572414","https://openalex.org/W2104840447","https://openalex.org/W2123259293","https://openalex.org/W2125105410","https://openalex.org/W2128584547","https://openalex.org/W2134772616","https://openalex.org/W2138556224","https://openalex.org/W2149992227","https://openalex.org/W2160819071","https://openalex.org/W2161633633","https://openalex.org/W2171179405","https://openalex.org/W2281804056","https://openalex.org/W2327543302","https://openalex.org/W2559013477","https://openalex.org/W2568659121","https://openalex.org/W2943562635","https://openalex.org/W2952763436","https://openalex.org/W2955787428","https://openalex.org/W2981672134","https://openalex.org/W3012147088","https://openalex.org/W3116451876","https://openalex.org/W3215015450","https://openalex.org/W4213014407","https://openalex.org/W4313547810","https://openalex.org/W4379058302","https://openalex.org/W4401659317","https://openalex.org/W4412841283","https://openalex.org/W4416209225"],"related_works":["https://openalex.org/W4213014407","https://openalex.org/W2975334847","https://openalex.org/W4412841283","https://openalex.org/W4408340904","https://openalex.org/W4248163827","https://openalex.org/W2984762502","https://openalex.org/W2024438347","https://openalex.org/W4414831065","https://openalex.org/W6902376073","https://openalex.org/W4319736795"],"abstract_inverted_index":{"Background":[0],"Selective":[1],"breeding":[2],"has":[3,88],"transformed":[4],"dairy":[5,52],"cattle":[6,53],"productivity,":[7],"but":[8],"the":[9,25,49,85,96,120,145,155,178,195,200,247,261,304,322,325,350,354,369,372,383,393,402,412],"genomic":[10,343],"consequences":[11],"of":[12,48,75,109,123,138,224,329,353,365,385,395,404,414],"long-term":[13],"directional":[14],"selection":[15,54,77,87],"-":[16,29],"what":[17,72],"it":[18,27],"costs":[19],"in":[20,24,44,80,84,119,148,159,177,194,199,327],"diversity":[21,318],"and":[22,90,131,162,214,242,308,317,358,378,417],"where":[23,83],"genome":[26,86],"acts":[28],"are":[30,38],"hard":[31],"to":[32,70,187,222,282,336,409],"quantify":[33],"because":[34],"contemporaneous":[35],"control":[36,59],"populations":[37],"rare.":[39],"The":[40,141,218],"Langhill":[41],"experiment,":[42],"established":[43],"1973,":[45],"is":[46,374,387],"one":[47,283],"world's":[50],"longest-running":[51],"trials":[55],"with":[56,271,315],"a":[57,113,132,206,238,256,297],"designed":[58],"line":[60,115,134,143,180,197,202,263,323],"kept":[61],"under":[62,98],"common":[63],"management.":[64],"We":[65,101],"used":[66,264],"this":[67],"resource":[68],"population":[69,164],"ask":[71],"five":[73,294],"decades":[74],"bull":[76],"have":[78],"cost":[79,384],"genetic":[81,111,125],"diversity,":[82],"acted,":[89],"whether":[91],"complementary":[92],"scans":[93,295],"converge":[94],"on":[95,300,321],"loci":[97],"selection.":[99],"Results":[100],"genotyped":[102],"archived":[103],"blood":[104],"samples":[105],"from":[106,167,185,255],"1,126":[107],"cows":[108,276],"two":[110,215,342],"lines:":[112],"Select":[114,142,179,196,262],"sired":[116,135],"by":[117,136,376],"bulls":[118,137,396],"top":[121],"decile":[122],"UK":[124],"merit":[126],"for":[127],"milk":[128],"fat-plus-protein":[129],"yield,":[130],"Control":[133,201],"average":[139],"merit.":[140],"showed":[144,290],"expected":[146],"gains":[147],"every":[149,182],"yield":[150],"trait.":[151],"Inbreeding":[152],"accumulated":[153,348],"at":[154,181,361],"same":[156],"annual":[157],"rate":[158,403],"both":[160],"lines,":[161,236],"effective":[163],"size,":[165],"estimated":[166],"that":[168,400],"rate,":[169],"was":[170,175,191,220],"approximately":[171],"33.":[172],"Linkage":[173],"disequilibrium":[174],"higher":[176,193],"marker":[183],"distance":[184],"2":[186,228],"300":[188],"kb.":[189],"Autozygosity":[190,331],"24.7%":[192],"than":[198,227,392],"(0.078":[203],"versus":[204,268],"0.063),":[205],"difference":[207],"robust":[208],"across":[209,287],"four":[210],"calling":[211],"parameter":[212],"sets":[213],"independent":[216],"callers.":[217],"excess":[219],"confined":[221],"runs":[223,231],"homozygosity":[225,366],"longer":[226],"Mb;":[229],"shorter":[230],"did":[232,252,333],"not":[233,253,334],"differ":[234],"between":[235],"confirming":[237],"shared":[239],"founder":[240],"base":[241],"placing":[243],"all":[244],"divergence":[245],"after":[246],"lines":[248],"were":[249,277],"split.":[250],"It":[251],"arise":[254],"numerically":[257],"narrower":[258],"sire":[259,356],"pool:":[260],"more":[265,280],"sires":[266,415],"(79":[267],"72),":[269],"each":[270],"fewer":[272],"daughters,":[273],"yet":[274],"its":[275],"three":[278],"times":[279],"related":[281],"another.":[284],"Twenty-eight":[285],"regions":[286],"thirteen":[288],"chromosomes":[289],"strong":[291],"differentiation;":[292],"intersecting":[293],"identified":[296],"four-method":[298],"signal":[299,326],"chromosome":[301,313],"21":[302],"spanning":[303],"SERPINA":[305],"gene":[306],"cluster":[307],"sixteen":[309],"three-method":[310],"regions,":[311],"including":[312],"3,":[314],"haplotype":[316],"statistics":[319],"agreeing":[320],"carrying":[324],"fourteen":[328],"seventeen.":[330],"itself":[332],"localise":[335],"any":[337],"region.":[338],"Conclusions":[339],"Selection":[340],"left":[341],"footprints:":[344],"diffuse,":[345],"recent":[346],"inbreeding":[347,386],"through":[349,389],"narrow":[351],"ancestry":[352,390],"elite":[355],"pool,":[357],"localised":[359],"differentiation":[360,380],"specific":[362],"loci.":[363],"Runs":[364],"index":[367],"only":[368],"first":[370],"process;":[371],"second":[373],"captured":[375],"frequency-":[377],"haplotype-based":[379],"scans.":[381],"Because":[382],"incurred":[388],"rather":[391],"number":[394,413],"used,":[397],"mating":[398],"schemes":[399],"constrain":[401],"co-ancestry":[405],"would":[406],"be":[407],"preferable":[408],"simply":[410],"managing":[411],"selected":[416],"used.":[418]},"counts_by_year":[],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-11-10T00:00:00"}