{"id":"https://openalex.org/W7225633358","doi":"https://doi.org/10.64898/2026.11.05.764768","title":"A genomic prediction framework for growth traits in black soldier fly ( Hermetia illucens ) breeding programmes","display_name":"A genomic prediction framework for growth traits in black soldier fly ( Hermetia illucens ) breeding programmes","publication_year":2026,"publication_date":"2026-11-09","ids":{"openalex":"https://openalex.org/W7225633358","doi":"https://doi.org/10.64898/2026.11.05.764768"},"language":"en","primary_location":{"id":"doi:10.64898/2026.11.05.764768","doi":"https://doi.org/10.64898/2026.11.05.764768","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.05.764768","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.05.764768.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.05.764768.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5123483135","display_name":"Kishor B. Gowda","orcid":"https://orcid.org/0009-0001-3330-6554","observed_orcids":["https://orcid.org/0009-0001-3330-6554"]},"institutions":[{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Kishor B Gowda","raw_affiliation_strings":["James Cook University, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"James Cook University, Australia","institution_ids":["https://openalex.org/I86467917"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080791275","display_name":"C\u00e9cile Massault","orcid":"https://orcid.org/0000-0002-8301-4250","observed_orcids":["https://orcid.org/0000-0002-8301-4250"]},"institutions":[{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Cecile Massault","raw_affiliation_strings":["James Cook University, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"James Cook University, Australia","institution_ids":["https://openalex.org/I86467917"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006005364","display_name":"Dean R. Jerry","orcid":"https://orcid.org/0000-0003-3735-1798","observed_orcids":["https://orcid.org/0000-0003-3735-1798"]},"institutions":[{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Dean R Jerry","raw_affiliation_strings":["James Cook University, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"James Cook University, Australia","institution_ids":["https://openalex.org/I86467917"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025955966","display_name":"Kyall Richard Zenger","orcid":"https://orcid.org/0000-0001-6817-8786","observed_orcids":["https://orcid.org/0000-0001-6817-8786"]},"institutions":[{"id":"https://openalex.org/I86467917","display_name":"James Cook University","ror":"https://ror.org/04gsp2c11","country_code":"AU","type":"education","lineage":["https://openalex.org/I86467917"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Kyall R Zenger","raw_affiliation_strings":["James Cook University, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"James Cook University, Australia","institution_ids":["https://openalex.org/I86467917"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5123483135"],"corresponding_institution_ids":["https://openalex.org/I86467917"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9937000274658203,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12336","display_name":"Insect Utilization and Effects","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/black-soldier-fly","display_name":"Hermetia illucens","score":1.0},{"id":"https://openalex.org/keywords/genomic-prediction","display_name":"genomic prediction","score":0.8640000224113464},{"id":"https://openalex.org/keywords/genomic-selection","display_name":"genomic selection","score":0.9700000286102295},{"id":"https://openalex.org/keywords/growth-traits","display_name":"growth traits","score":0.8619999885559082},{"id":"https://openalex.org/keywords/larval-body-weight","display_name":"larval body weight","score":0.9309999942779541},{"id":"https://openalex.org/keywords/larval-length","display_name":"larval length","score":0.7110000252723694},{"id":"https://openalex.org/keywords/genotype-by-diet-interaction","display_name":"genotype by diet interaction","score":0.7799999713897705},{"id":"https://openalex.org/keywords/additive-dominance-model","display_name":"additive-dominance model","score":0.7160000205039978},{"id":"https://openalex.org/keywords/reference-population","display_name":"reference population","score":0.6169999837875366},{"id":"https://openalex.org/keywords/brewers-spent-grain","display_name":"brewer's spent grain","score":0.9110000133514404},{"id":"https://openalex.org/keywords/fruit-and-vegetable-waste","display_name":"fruit and vegetable waste","score":0.8650000095367432},{"id":"https://openalex.org/keywords/genetic-connectivity","display_name":"genetic connectivity","score":0.3700000047683716}],"concepts":[{"id":"https://openalex.org/C2777121799","wikidata":"https://www.wikidata.org/wiki/Q285029","display_name":"Hermetia illucens","level":3,"score":0.9370999932289124},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8626999855041504},{"id":"https://openalex.org/C173758957","wikidata":"https://www.wikidata.org/wiki/Q129270","display_name":"Larva","level":2,"score":0.6007999777793884},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5403000116348267},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.44940000772476196},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.4465000033378601},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.43779999017715454},{"id":"https://openalex.org/C2992444039","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Genomic selection","level":5,"score":0.4268999993801117},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3797999918460846},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.3659000098705292},{"id":"https://openalex.org/C103545067","wikidata":"https://www.wikidata.org/wiki/Q796265","display_name":"Best linear unbiased prediction","level":3,"score":0.3544999957084656},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.35010001063346863},{"id":"https://openalex.org/C86909935","wikidata":"https://www.wikidata.org/wiki/Q188989","display_name":"Aquaculture","level":3,"score":0.3467000126838684},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.3075000047683716},{"id":"https://openalex.org/C2778890363","wikidata":"https://www.wikidata.org/wiki/Q550479","display_name":"Genetic gain","level":4,"score":0.30059999227523804},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.2980000078678131},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.288100004196167},{"id":"https://openalex.org/C151913843","wikidata":"https://www.wikidata.org/wiki/Q3454555","display_name":"Dominance (genetics)","level":3,"score":0.2791999876499176},{"id":"https://openalex.org/C12558332","wikidata":"https://www.wikidata.org/wiki/Q995745","display_name":"Selective breeding","level":2,"score":0.2621999979019165},{"id":"https://openalex.org/C45804977","wikidata":"https://www.wikidata.org/wiki/Q7239673","display_name":"Predictive modelling","level":2,"score":0.259799987077713},{"id":"https://openalex.org/C112592230","wikidata":"https://www.wikidata.org/wiki/Q339051","display_name":"Heterosis","level":3,"score":0.2524999976158142}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.11.05.764768","doi":"https://doi.org/10.64898/2026.11.05.764768","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.05.764768","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.05.764768.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.11.05.764768","doi":"https://doi.org/10.64898/2026.11.05.764768","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.05.764768","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.05.764768.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":1.0}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225633358.pdf","grobid_xml":"https://content.openalex.org/works/W7225633358.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1928998639","https://openalex.org/W1970149620","https://openalex.org/W1999398820","https://openalex.org/W2002600206","https://openalex.org/W2067715889","https://openalex.org/W2103277984","https://openalex.org/W2141693972","https://openalex.org/W2157395790","https://openalex.org/W2161633633","https://openalex.org/W2758525500","https://openalex.org/W2810853310","https://openalex.org/W2884074700","https://openalex.org/W2912579174","https://openalex.org/W2949118662","https://openalex.org/W3008274051","https://openalex.org/W3026846932","https://openalex.org/W3136900394","https://openalex.org/W3216901906","https://openalex.org/W4210491531","https://openalex.org/W4225260088","https://openalex.org/W4226369822","https://openalex.org/W4282961887","https://openalex.org/W4323319856","https://openalex.org/W4384923099","https://openalex.org/W4386102888","https://openalex.org/W4391798148","https://openalex.org/W4399913680","https://openalex.org/W4401344119","https://openalex.org/W4403401657","https://openalex.org/W4403978760","https://openalex.org/W4404381211","https://openalex.org/W4406191441","https://openalex.org/W4406346716","https://openalex.org/W4406956584","https://openalex.org/W4408250579","https://openalex.org/W4408862497","https://openalex.org/W4409109518","https://openalex.org/W4409464055","https://openalex.org/W4409662614","https://openalex.org/W4409986387","https://openalex.org/W4411253705","https://openalex.org/W4414140264","https://openalex.org/W4414991821","https://openalex.org/W4416738879","https://openalex.org/W4417024873","https://openalex.org/W4417400388","https://openalex.org/W7123347094","https://openalex.org/W7167934771","https://openalex.org/W7169774986","https://openalex.org/W7172156270","https://openalex.org/W7221042087","https://openalex.org/W7222962691"],"related_works":["https://openalex.org/W7222962691","https://openalex.org/W4225260088","https://openalex.org/W4400320570","https://openalex.org/W3008799722","https://openalex.org/W3000887050","https://openalex.org/W7168101816","https://openalex.org/W7221042087","https://openalex.org/W7115416780","https://openalex.org/W4410016972","https://openalex.org/W4416806722"],"abstract_inverted_index":{"Background":[0],"Genomic":[1,134],"prediction":[2,135,209,278],"has":[3],"been":[4],"applied":[5],"in":[6,24,59,279,281],"livestock,":[7],"plant":[8],"and":[9,19,54,88,91,94,129,144,150,163,166,213,255,265,299],"aquaculture":[10],"species":[11],"to":[12,38,48,57,232],"accelerate":[13],"genetic":[14,253,294],"gain.":[15],"However,":[16],"its":[17],"application":[18],"potential":[20],"still":[21],"remain":[22],"unexplored":[23],"farmed":[25],"black":[26],"soldier":[27],"fly":[28],"(BSF),":[29],"an":[30,273],"emerging":[31],"globally":[32],"important":[33],"insect":[34],"production":[35,55,285],"species.":[36],"Due":[37],"the":[39,74,97,183,227,263,290,293],"diversity":[40],"of":[41,292],"BSF":[42,64,71,280],"feed":[43,106],"sources,":[44],"selection":[45,62],"strategies":[46],"need":[47],"be":[49],"evaluated":[50,137],"across":[51,131,172,222],"various":[52],"feedstocks":[53],"environments":[56],"aid":[58],"building":[60],"genomic":[61,277,304],"into":[63],"breeding":[65],"programmes.":[66],"In":[67],"this":[68],"study,":[69],"2,083":[70],"larvae":[72],"from":[73,96,230,251],"base":[75],"population":[76,99],"were":[77,100,109],"reared":[78,101],"on":[79,102],"three":[80],"diets":[81],"(SYK:":[82],"Soy-okara,":[83],"BSG:":[84],"brewers'":[85],"spent":[86],"grain":[87],"FVW:":[89],"fruit":[90],"vegetable":[92],"waste),":[93],"536":[95],"F7":[98],"a":[103],"chicken":[104],"starter":[105],"diet.":[107],"Larvae":[108],"phenotyped":[110],"for":[111,187,195,276,303],"four":[112],"growth":[113,184],"traits":[114],"(LBW,":[115],"larval":[116,120,123,126],"body":[117],"weight;":[118],"LL,":[119],"length;":[121],"LW,":[122],"width;":[124],"LSA,":[125],"surface":[127],"area)":[128],"genotyped":[130],"4,680":[132,231],"SNPs.":[133,243],"was":[136,210],"using":[138],"seven":[139],"methods":[140],"under":[141],"additive":[142],"(A)":[143],"additive-dominance":[145],"(AD)":[146],"models,":[147],"considering":[148],"across-":[149],"within-diet":[151,206,217],"effects,":[152],"genotype":[153],"by":[154],"diet":[155],"(G":[156,258],"\u00d7":[157,197,259],"D)":[158],"interactions,":[159],"differences":[160],"amongst":[161],"reference":[162,264,297],"test":[164],"generations,":[165,246],"SNP":[167,228],"densities.":[168],"Results":[169,287],"Performance":[170],"varied":[171],"all":[173],"scenarios,":[174],"with":[175],"LBW":[176],"showing":[177,219],"higher":[178],"predictive":[179,247],"ability":[180],"(PA)":[181],"among":[182],"traits.":[185],"Accounting":[186],"dominance":[188],"generally":[189,214],"improved":[190],"PA.":[191],"Multivariate":[192],"models":[193],"accounting":[194],"G":[196],"D":[198],"performed":[199],"similarly":[200],"to,":[201],"or":[202,283],"marginally":[203],"better":[204],"than,":[205],"predictions.":[207],"Cross-diet":[208],"more":[211],"variable":[212],"lower":[215],"than":[216],"prediction,":[218],"reduced":[220,252],"transferability":[221],"untested":[223],"nutritional":[224],"environments.":[225],"Reducing":[226],"density":[229],"3,000":[233,242],"SNPs":[234],"maintained":[235],"comparable":[236],"PA;":[237],"however,":[238],"PA":[239],"decreased":[240],"below":[241],"Across":[244],"multiple":[245],"performance":[248],"declined,":[249],"resulting":[250],"connectivity":[254],"possible":[256],"genotype-by-environment":[257],"E)":[260],"interactions":[261],"between":[262],"testing":[266],"populations.":[267],"Conclusions":[268],"Overall,":[269],"these":[270],"results":[271],"provide":[272],"application-based":[274],"framework":[275],"semi-":[282],"commercial":[284],"settings.":[286],"also":[288],"highlight":[289],"importance":[291],"model,":[295],"representative":[296],"populations,":[298],"appropriate":[300],"marker":[301],"densities":[302],"selection.":[305]},"counts_by_year":[],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-11-10T00:00:00"}
