{"id":"https://openalex.org/W7225632167","doi":"https://doi.org/10.1128/spectrum.02815-26","title":"Complete genome sequence of Pseudomonas sp. gA1, a metabolically specialized deep-sea bacterium from abyssal sediment of the Western Pacific Ocean","display_name":"Complete genome sequence of Pseudomonas sp. gA1, a metabolically specialized deep-sea bacterium from abyssal sediment of the Western Pacific Ocean","publication_year":2026,"publication_date":"2026-11-09","ids":{"openalex":"https://openalex.org/W7225632167","doi":"https://doi.org/10.1128/spectrum.02815-26","pmid":"https://pubmed.ncbi.nlm.nih.gov/43001803"},"language":"en","primary_location":{"id":"doi:10.1128/spectrum.02815-26","doi":"https://doi.org/10.1128/spectrum.02815-26","is_oa":true,"landing_page_url":"https://doi.org/10.1128/spectrum.02815-26","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1128/spectrum.02815-26","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5079617481","display_name":"Muhammad Zain Ul Arifeen","orcid":"https://orcid.org/0000-0003-3166-921X","observed_orcids":["https://orcid.org/0000-0003-3166-921X"]},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]},{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Muhammad Zain Ul Arifeen","raw_affiliation_strings":["Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology","School of Marine Sciences, Ningbo University"],"raw_orcid":"https://orcid.org/0000-0003-3166-921X","affiliations":[{"raw_affiliation_string":"Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology","institution_ids":["https://openalex.org/I3045169105"]},{"raw_affiliation_string":"School of Marine Sciences, Ningbo University","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114155270","display_name":"Xunying Zhou","orcid":"https://orcid.org/0009-0002-8172-5742","observed_orcids":["https://orcid.org/0009-0002-8172-5742"]},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xunying Zhou","raw_affiliation_strings":["Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161323916","display_name":"Surfaraz Hussain","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Surfaraz Hussain","raw_affiliation_strings":["Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061444494","display_name":"Nazia Mahtab","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Nazia Mahtab","raw_affiliation_strings":["Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology","institution_ids":["https://openalex.org/I3045169105"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044782859","display_name":"Haibo Jiang","orcid":"https://orcid.org/0000-0002-3515-4398","observed_orcids":["https://orcid.org/0000-0002-3515-4398","https://orcid.org/0009-0002-0993-2499"]},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hai\u2011Bo Jiang","raw_affiliation_strings":["School of Marine Sciences, Ningbo University"],"raw_orcid":"https://orcid.org/0000-0002-3515-4398","affiliations":[{"raw_affiliation_string":"School of Marine Sciences, Ningbo University","institution_ids":["https://openalex.org/I109935558"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085636721","display_name":"Shengwei Hou","orcid":"https://orcid.org/0000-0002-4474-7443","observed_orcids":["https://orcid.org/0000-0002-4474-7443"]},"institutions":[{"id":"https://openalex.org/I3045169105","display_name":"Southern University of Science and Technology","ror":"https://ror.org/049tv2d57","country_code":"CN","type":"education","lineage":["https://openalex.org/I3045169105"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengwei Hou","raw_affiliation_strings":["Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology"],"raw_orcid":"https://orcid.org/0000-0002-4474-7443","affiliations":[{"raw_affiliation_string":"Department of Ocean Science and Engineering, Shenzhen Key Laboratory of Marine Archaea Geo-Omics, Southern University of Science and Technology","institution_ids":["https://openalex.org/I3045169105"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":{"value":2500,"currency":"USD","value_usd":2500},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"e0281526","last_page":"e0281526"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.8036999702453613,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.8036999702453613,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.10140000283718109,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12180","display_name":"Polar Research and Ecology","score":0.02850000001490116,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/complete-genome-sequence","display_name":"complete genome sequence","score":0.7900000214576721},{"id":"https://openalex.org/keywords/deep-sea-bacteria","display_name":"deep-sea bacteria","score":0.8339999914169312},{"id":"https://openalex.org/keywords/branched-chain-amino-acids","display_name":"branched-chain amino acids","score":0.8149999976158142},{"id":"https://openalex.org/keywords/piezotolerance","display_name":"piezotolerance","score":0.8980000019073486},{"id":"https://openalex.org/keywords/high-hydrostatic-pressure","display_name":"high hydrostatic pressure","score":0.6259999871253967},{"id":"https://openalex.org/keywords/peptide-transporters","display_name":"peptide transporters","score":0.6159999966621399},{"id":"https://openalex.org/keywords/arginine-deiminase-pathway","display_name":"arginine deiminase pathway","score":0.7979999780654907},{"id":"https://openalex.org/keywords/substrate-level-phosphorylation","display_name":"substrate-level phosphorylation","score":0.8790000081062317},{"id":"https://openalex.org/keywords/biosynthetic-gene-clusters","display_name":"biosynthetic gene clusters","score":0.878000020980835}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7110000252723694},{"id":"https://openalex.org/C2776835041","wikidata":"https://www.wikidata.org/wiki/Q135292","display_name":"Pseudomonas fluorescens","level":3,"score":0.677299976348877},{"id":"https://openalex.org/C173815673","wikidata":"https://www.wikidata.org/wiki/Q242857","display_name":"Abyssal zone","level":2,"score":0.5630999803543091},{"id":"https://openalex.org/C2910081258","wikidata":"https://www.wikidata.org/wiki/Q177807","display_name":"Hydrostatic pressure","level":2,"score":0.5623000264167786},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.5550000071525574},{"id":"https://openalex.org/C153568844","wikidata":"https://www.wikidata.org/wiki/Q96392018","display_name":"Marine bacteriophage","level":3,"score":0.477400004863739},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.47679999470710754},{"id":"https://openalex.org/C50944625","wikidata":"https://www.wikidata.org/wiki/Q570554","display_name":"Abyssal plain","level":3,"score":0.4424999952316284},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4205000102519989},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.366100013256073},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3610000014305115},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36059999465942383},{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.3549000024795532},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.3483999967575073},{"id":"https://openalex.org/C2781463711","wikidata":"https://www.wikidata.org/wiki/Q131143","display_name":"Pseudomonas","level":3,"score":0.3215000033378601},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.31150001287460327},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.30869999527931213},{"id":"https://openalex.org/C550995028","wikidata":"https://www.wikidata.org/wiki/Q10872","display_name":"Archaea","level":3,"score":0.3041999936103821},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.2888999879360199},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.2696000039577484},{"id":"https://openalex.org/C2777468819","wikidata":"https://www.wikidata.org/wiki/Q173670","display_name":"Arginine","level":3,"score":0.25760000944137573},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.25429999828338623},{"id":"https://openalex.org/C2779825944","wikidata":"https://www.wikidata.org/wiki/Q7097792","display_name":"Operational taxonomic unit","level":4,"score":0.25110000371932983}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1128/spectrum.02815-26","doi":"https://doi.org/10.1128/spectrum.02815-26","is_oa":true,"landing_page_url":"https://doi.org/10.1128/spectrum.02815-26","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},{"id":"pmid:43001803","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/43001803","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology spectrum","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1128/spectrum.02815-26","doi":"https://doi.org/10.1128/spectrum.02815-26","is_oa":true,"landing_page_url":"https://doi.org/10.1128/spectrum.02815-26","pdf_url":null,"source":{"id":"https://openalex.org/S2764766708","display_name":"Microbiology Spectrum","issn_l":"2165-0497","issn":["2165-0497"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","doyens","jufo-2","ki-jl-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Spectrum","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.5769000053405762}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321543","display_name":"China Postdoctoral Science Foundation","ror":"https://ror.org/0426zh255"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":109,"referenced_works":["https://openalex.org/W197444862","https://openalex.org/W229090448","https://openalex.org/W1491637723","https://openalex.org/W1502478687","https://openalex.org/W1513720422","https://openalex.org/W1580982499","https://openalex.org/W1879366838","https://openalex.org/W1924867606","https://openalex.org/W1973511795","https://openalex.org/W1980461189","https://openalex.org/W1989934225","https://openalex.org/W1998704254","https://openalex.org/W1999455283","https://openalex.org/W2002042584","https://openalex.org/W2002932520","https://openalex.org/W2019916357","https://openalex.org/W2028347482","https://openalex.org/W2029785731","https://openalex.org/W2031611770","https://openalex.org/W2037190414","https://openalex.org/W2054968094","https://openalex.org/W2059090552","https://openalex.org/W2061578584","https://openalex.org/W2062809729","https://openalex.org/W2064202374","https://openalex.org/W2089817915","https://openalex.org/W2090330632","https://openalex.org/W2091819553","https://openalex.org/W2095669893","https://openalex.org/W2095704344","https://openalex.org/W2096093282","https://openalex.org/W2098665638","https://openalex.org/W2104503310","https://openalex.org/W2106663365","https://openalex.org/W2107772251","https://openalex.org/W2109877138","https://openalex.org/W2113112355","https://openalex.org/W2113284511","https://openalex.org/W2113592672","https://openalex.org/W2113824405","https://openalex.org/W2116206245","https://openalex.org/W2124062520","https://openalex.org/W2125483610","https://openalex.org/W2127004330","https://openalex.org/W2127036970","https://openalex.org/W2128031928","https://openalex.org/W2130124027","https://openalex.org/W2132108586","https://openalex.org/W2132430491","https://openalex.org/W2134375163","https://openalex.org/W2135684970","https://openalex.org/W2139275024","https://openalex.org/W2143535440","https://openalex.org/W2144229317","https://openalex.org/W2149229791","https://openalex.org/W2149353640","https://openalex.org/W2158752477","https://openalex.org/W2159463659","https://openalex.org/W2160759517","https://openalex.org/W2163508057","https://openalex.org/W2166976236","https://openalex.org/W2167073192","https://openalex.org/W2175407492","https://openalex.org/W2323506703","https://openalex.org/W2473711714","https://openalex.org/W2610656577","https://openalex.org/W2736417223","https://openalex.org/W2753346670","https://openalex.org/W2781763834","https://openalex.org/W2788228074","https://openalex.org/W2790227506","https://openalex.org/W2793132630","https://openalex.org/W2803787045","https://openalex.org/W2884080534","https://openalex.org/W2884686081","https://openalex.org/W2899197907","https://openalex.org/W2900629010","https://openalex.org/W2946204549","https://openalex.org/W2950891420","https://openalex.org/W2950954328","https://openalex.org/W2951254987","https://openalex.org/W2951464304","https://openalex.org/W2988396470","https://openalex.org/W3000121956","https://openalex.org/W3005235420","https://openalex.org/W3007626223","https://openalex.org/W3019706413","https://openalex.org/W3020607540","https://openalex.org/W3099496190","https://openalex.org/W3143063265","https://openalex.org/W3162924116","https://openalex.org/W3175616293","https://openalex.org/W3182033358","https://openalex.org/W3199649297","https://openalex.org/W3200103613","https://openalex.org/W3203343200","https://openalex.org/W3207024295","https://openalex.org/W3211795435","https://openalex.org/W3212385379","https://openalex.org/W4200346078","https://openalex.org/W4250951513","https://openalex.org/W4294576814","https://openalex.org/W4304481015","https://openalex.org/W4307425304","https://openalex.org/W4309305948","https://openalex.org/W4368358469","https://openalex.org/W4385302529","https://openalex.org/W4402697735","https://openalex.org/W7096102141"],"related_works":["https://openalex.org/W4288067500","https://openalex.org/W2939661007","https://openalex.org/W2604957713","https://openalex.org/W2618827967","https://openalex.org/W4361027476","https://openalex.org/W347580108","https://openalex.org/W3215945418","https://openalex.org/W7214951127","https://openalex.org/W2035472703","https://openalex.org/W3048068988"],"abstract_inverted_index":{"ABSTRACT":[0],"The":[1,79,294,393],"abyssal":[2,36,147,295,330],"seafloor,":[3],"exposed":[4],"to":[5,95,266,291,354,361,365,390,425,460,484],"extreme":[6],"pressure,":[7,450],"near-freezing":[8],"temperatures,":[9],"and":[10,98,127,131,155,171,200,215,238,250,258,300,340,405,419,445,466,471],"severe":[11],"carbon":[12,33],"limitation,":[13],"remains":[14,48,321,364],"one":[15,264],"of":[16,56,93,102,145,157,166,189,359,410,429,436],"the":[17,39,53,66,111,123,128,146,151,158,196,226,298,357,375,382,406,463],"least":[18],"understood":[19],"microbial":[20],"habitats":[21],"on":[22,304,337],"Earth.":[23],"Branched-chain":[24],"amino":[25,74,168,236,251,288,338,469],"acids":[26,75],"(BCAAs)":[27],"are":[28,318,413],"an":[29],"abundant":[30],"but":[31],"underexplored":[32],"source":[34],"in":[35,65,152,247,421,462],"sediments,":[37],"yet":[38,306],"genomic":[40,285,377],"basis":[41],"for":[42,164,400,416,456],"their":[43],"use":[44],"by":[45,70,174,211],"deep-sea":[46,282,401],"heterotrophs":[47],"uncharacterized.":[49],"Here,":[50],"we":[51],"report":[52],"complete":[54,202,346],"genome":[55,343,458],"Pseudomonas":[57],"sp.":[58],"gA1,":[59],"isolated":[60],"from":[61,122],"6,000":[62],"m":[63],"sediment":[64],"Western":[67],"Pacific":[68],"Ocean":[69],"anaerobic":[71,208,216],"enrichment":[72],"with":[73,225,269,371],"under":[76,333,448],"40":[77,177],"MPa.":[78,178],"7.27":[80],"Mb":[81],"circular":[82],"chromosome":[83],"encodes":[84,344],"6,827":[85],"protein-coding":[86],"genes.":[87],"Polyphasic":[88],"taxonomy\u2014including":[89],"average":[90],"nucleotide":[91],"identity":[92],"94.15%":[94],"P.":[96,112,124,197],"yamanorum":[97],"digital":[99],"DNA-DNA":[100],"hybridization":[101],"55.5%\u2014confirmed":[103],"strain":[104,440],"gA1":[105,117,277,441],"as":[106,278,350,477],"a":[107,182,201,222,255,279,328,345,351,396,453,478],"novel":[108,437],"species":[109],"within":[110],"fluorescens":[113,125,198],"group.":[114],"We":[115],"compared":[116],"against":[118],"16":[119,372],"reference":[120],"genomes":[121,385],"group":[126,199],"marine":[129,227],"Halopseudomonas":[130,228,384],"Stutzerimonas":[132],"lineages.":[133],"Under":[134],"elevated":[135,334],"hydrostatic":[136,335],"pressure":[137,154,336],"at":[138,176,480],"10":[139],"\u00b0C,":[140],"which":[141,360,481],"approximates":[142],"selected":[143],"aspects":[144],"environment":[148],"rather":[149,386,433,474],"than":[150,387,434,475],"situ":[153],"temperature":[156],"6,000-m":[159],"collection":[160],"site,":[161],"BCAAs":[162],"accounted":[163],"49%":[165],"total":[167],"acid":[169,237,252,289,470],"consumed,":[170],"growth":[172,312],"increased":[173],"50%":[175],"Genome":[179],"analysis":[180],"revealed":[181],"largely":[183],"represented":[184],"BCAA":[185],"degradation":[186],"pathway":[187,206,349],"(11":[188],"14":[190],"KEGG":[191],"Orthology":[192],"identifiers)":[193],"conserved":[194],"across":[195,381],"arginine":[203,347],"deiminase":[204,348],"(arcABC)":[205],"supporting":[207],"ATP":[209],"generation":[210],"substrate-level":[212,355],"phosphorylation.":[213],"Denitrification":[214],"respiratory":[217,316],"genes":[218,412],"were":[219],"not":[220,319],"detected,":[221],"trait":[223],"shared":[224,380],"lineage.":[229],"Its":[230],"most":[231,301],"distinctive":[232],"feature":[233],"is":[234,297,379,442],"expanded":[235,242],"peptide":[239,472],"acquisition:":[240],"44":[241],"orthogroups,":[243],"including":[244,263],"families":[245],"involved":[246],"dipeptide,":[248],"oligopeptide":[249],"acquisition,":[253,473],"alongside":[254],"chaperone":[256],"network":[257],"17":[259],"biosynthetic":[260],"gene":[261],"clusters,":[262],"similar":[265],"those":[267],"associated":[268],"viscosinamide":[270],"A/pseudodesmin":[271],"A":[272],"biosynthesis.":[273],"These":[274],"findings":[275],"establish":[276],"metabolically":[280],"specialized":[281],"bacterium":[283],"whose":[284],"architecture":[286],"couples":[287],"acquisition":[290,435],"piezotolerance.":[292],"IMPORTANCE":[293],"seafloor":[296],"largest":[299],"energy-limited":[302],"habitat":[303],"Earth,":[305],"how":[307],"its":[308,342],"resident":[309],"bacteria":[310],"sustain":[311],"where":[313],"several":[314],"canonical":[315],"chains":[317],"detected":[320],"poorly":[322],"understood.":[323],"This":[324],"study":[325],"shows":[326],"that":[327,341],"cultured":[329,444],"isolate":[331],"grows":[332],"acids,":[339],"potential":[352],"route":[353],"phosphorylation,":[356],"contribution":[358],"energy":[362],"metabolism":[363],"be":[366],"measured.":[367],"Through":[368],"direct":[369],"comparison":[370],"related":[373],"genomes,":[374],"same":[376],"configuration":[378],"sampled":[383],"being":[388],"confined":[389],"this":[391],"isolate.":[392],"work":[394],"carries":[395],"broader":[397],"methodological":[398],"message":[399],"genomics:":[402],"pathway-completeness":[403],"scores":[404],"presence":[407],"or":[408],"absence":[409],"individual":[411],"weak":[414],"proxies":[415],"physiological":[417],"capacity,":[418],"adaptation":[420],"these":[422],"organisms":[423],"appears":[424],"proceed":[426],"through":[427],"expansion":[428],"existing":[430],"uptake":[431],"systems":[432],"functions.":[438],"Because":[439],"both":[443],"experimentally":[446],"tractable":[447],"high":[449],"it":[451,467],"offers":[452],"testable":[454],"model":[455],"linking":[457],"content":[459],"function":[461],"deep":[464],"biosphere,":[465],"identifies":[468],"catabolism,":[476],"point":[479],"lineages":[482],"adapted":[483],"cold,":[485],"organic-poor":[486],"sediments":[487],"diverge.":[488]},"counts_by_year":[],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-11-10T00:00:00"}
