{"id":"https://openalex.org/W7225631689","doi":"https://doi.org/10.64898/2026.11.06.764811","title":"Engineered DNA materials shape microbial physiology and ecological selection","display_name":"Engineered DNA materials shape microbial physiology and ecological selection","publication_year":2026,"publication_date":"2026-11-09","ids":{"openalex":"https://openalex.org/W7225631689","doi":"https://doi.org/10.64898/2026.11.06.764811"},"language":"en","primary_location":{"id":"doi:10.64898/2026.11.06.764811","doi":"https://doi.org/10.64898/2026.11.06.764811","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764811","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764811.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764811.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5030984779","display_name":"Laura Meisch","orcid":"https://orcid.org/0000-0002-5670-3026","observed_orcids":["https://orcid.org/0000-0002-5670-3026"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Laura Meisch","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0002-5670-3026","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021659634","display_name":"Marta Velaz Mart\u00edn","orcid":"https://orcid.org/0000-0002-6960-7287","observed_orcids":["https://orcid.org/0000-0002-6960-7287"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marta Velaz Martin","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0002-6960-7287","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067335501","display_name":"Svenja Moench","orcid":"https://orcid.org/0000-0002-3193-5963","observed_orcids":["https://orcid.org/0000-0002-3193-5963"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Svenja A. Moench","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0002-3193-5963","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014211238","display_name":"Simone Weigel","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Simone Weigel","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047438063","display_name":"John Vollmers","orcid":"https://orcid.org/0000-0001-5980-5178","observed_orcids":["https://orcid.org/0000-0001-5980-5178"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"John Vollmers","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0001-5980-5178","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161362149","display_name":"Paula S. Jaeger","orcid":"https://orcid.org/0009-0004-1911-4072","observed_orcids":["https://orcid.org/0009-0004-1911-4072"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Paula S. Jaeger","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0009-0004-1911-4072","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036048756","display_name":"Anne\u2010Kristin Kaster","orcid":"https://orcid.org/0000-0002-6361-9551","observed_orcids":["https://orcid.org/0000-0002-6361-9551"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anne-Kristin Kaster","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0002-6361-9551","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067307807","display_name":"Kersten S. Rabe","orcid":"https://orcid.org/0000-0001-7909-8191","observed_orcids":["https://orcid.org/0000-0001-7909-8191"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kersten S. Rabe","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0001-7909-8191","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042939441","display_name":"Christof M. Niemeyer","orcid":"https://orcid.org/0000-0002-8837-081X","observed_orcids":["https://orcid.org/0000-0002-8837-081X"]},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christof M. Niemeyer","raw_affiliation_strings":["Karlsruhe Institute of Technology"],"raw_orcid":"https://orcid.org/0000-0002-8837-081X","affiliations":[{"raw_affiliation_string":"Karlsruhe Institute of Technology","institution_ids":["https://openalex.org/I102335020"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5042939441"],"corresponding_institution_ids":["https://openalex.org/I102335020"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.6201000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10593","display_name":"Bacterial biofilms and quorum sensing","score":0.6201000213623047,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.22450000047683716,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11231","display_name":"Microbial Fuel Cells and Bioremediation","score":0.06780000030994415,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/extracellular-dna","display_name":"extracellular DNA","score":0.9300000071525574},{"id":"https://openalex.org/keywords/microbial-community-assembly","display_name":"microbial community assembly","score":0.7289999723434448},{"id":"https://openalex.org/keywords/community-succession","display_name":"community succession","score":0.7720000147819519},{"id":"https://openalex.org/keywords/bacterial-stress-response","display_name":"bacterial stress response","score":0.8489999771118164},{"id":"https://openalex.org/keywords/gene-expression-changes","display_name":"gene expression changes","score":0.6980000138282776},{"id":"https://openalex.org/keywords/bacterial-consortia","display_name":"bacterial consortium","score":0.6119999885559082},{"id":"https://openalex.org/keywords/wastewater-microbiome","display_name":"wastewater microbiome","score":0.9259999990463257},{"id":"https://openalex.org/keywords/dna-junctions","display_name":"DNA junctions","score":0.5339999794960022},{"id":"https://openalex.org/keywords/microbial-genomics","display_name":"microbial genomics","score":0.5799999833106995},{"id":"https://openalex.org/keywords/biofilm","display_name":"biofilm","score":0.7059999704360962}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.7437999844551086},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6978999972343445},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.5992000102996826},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.5230000019073486},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.4812000095844269},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4611000120639801},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.45190000534057617},{"id":"https://openalex.org/C103316784","wikidata":"https://www.wikidata.org/wiki/Q3634109","display_name":"Microbial genetics","level":3,"score":0.4505000114440918},{"id":"https://openalex.org/C28406088","wikidata":"https://www.wikidata.org/wiki/Q5571762","display_name":"Extracellular","level":2,"score":0.4449000060558319},{"id":"https://openalex.org/C58123911","wikidata":"https://www.wikidata.org/wiki/Q467410","display_name":"Biofilm","level":3,"score":0.43070000410079956},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.41359999775886536},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3903999924659729},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.3440000116825104},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.34150001406669617},{"id":"https://openalex.org/C129968341","wikidata":"https://www.wikidata.org/wiki/Q1385446","display_name":"Extracellular polymeric substance","level":4,"score":0.34150001406669617},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.33809998631477356},{"id":"https://openalex.org/C19843653","wikidata":"https://www.wikidata.org/wiki/Q213907","display_name":"Model organism","level":3,"score":0.33709999918937683},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.32910001277923584},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.3249000012874603},{"id":"https://openalex.org/C75268714","wikidata":"https://www.wikidata.org/wiki/Q43478","display_name":"Natural selection","level":3,"score":0.28859999775886536},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.28459998965263367},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.26820001006126404},{"id":"https://openalex.org/C542256929","wikidata":"https://www.wikidata.org/wiki/Q279999","display_name":"Evolutionary physiology","level":4,"score":0.25870001316070557},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.2551000118255615},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.2547999918460846},{"id":"https://openalex.org/C175605896","wikidata":"https://www.wikidata.org/wiki/Q39833","display_name":"Microorganism","level":3,"score":0.25270000100135803}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.11.06.764811","doi":"https://doi.org/10.64898/2026.11.06.764811","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764811","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764811.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.11.06.764811","doi":"https://doi.org/10.64898/2026.11.06.764811","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.06.764811","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/09/2026.11.06.764811.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225631689.pdf","grobid_xml":"https://content.openalex.org/works/W7225631689.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4382630943","https://openalex.org/W2040783898","https://openalex.org/W2001070837","https://openalex.org/W4224229867","https://openalex.org/W7214005100","https://openalex.org/W1596628530","https://openalex.org/W4283168378","https://openalex.org/W1849498483","https://openalex.org/W7221599087","https://openalex.org/W1773746175"],"abstract_inverted_index":{"Extracellular":[0],"DNA":[1,48,78,95,107],"(eDNA)":[2],"is":[3],"both":[4],"a":[5,12,61,101,116],"structural":[6],"component":[7],"of":[8,15,36],"microbial":[9,37,97,110,126,138],"biofilms":[10],"and":[11,39,57,64,109,128],"potential":[13],"reservoir":[14],"genetic":[16,111],"information,":[17],"yet":[18],"its":[19,82,122,132],"role":[20,118],"as":[21,34],"an":[22],"ecological":[23,129],"material":[24,123],"remains":[25],"largely":[26],"unexplored.":[27],"Here":[28],"we":[29],"establish":[30],"engineered":[31,120],"extracellular":[32,106],"materials":[33,108],"determinants":[35],"physiology":[38,127],"community":[40,66],"assembly":[41],"across":[42],"increasing":[43],"biological":[44],"complexity.":[45],"A":[46],"three-dimensional":[47],"hydrogel":[49],"altered":[50],"bacterial":[51],"stress-associated":[52],"responses,":[53],"elicited":[54],"species-dependent":[55],"phenotypes":[56],"transcriptional":[58],"changes":[59],"in":[60,68],"defined":[62],"consortium,":[63],"shaped":[65],"succession":[67],"wastewater-derived":[69],"microbiomes.":[70],"Distinct":[71],"responses":[72],"to":[73,96],"surface-bound":[74],"oligonucleotides":[75],"reveal":[76,115],"that":[77],"presentation":[79],"matters":[80],"beyond":[81],"mere":[83],"presence.":[84],"Strikingly,":[85],"metagenomic":[86],"sequencing":[87],"identified":[88],"rare,":[89],"hydrogel-specific":[90],"candidate":[91],"junctions":[92],"linking":[93],"material-derived":[94],"genomic":[98,139],"sequences,":[99],"suggesting":[100],"previously":[102],"unexplored":[103],"interface":[104],"between":[105],"information.":[112],"These":[113],"findings":[114],"dual":[117],"for":[119],"DNA:":[121],"organization":[124],"shapes":[125],"selection,":[130],"while":[131],"encoded":[133],"sequences":[134],"may":[135],"engage":[136],"with":[137],"processes.":[140]},"counts_by_year":[],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-11-10T00:00:00"}
