{"id":"https://openalex.org/W7225433270","doi":"https://doi.org/10.21203/rs.3.rs-11434343/v1","title":"A next-generation genotyping process to balance demographic goals and genetic health for the Paddlefish (Polyodon spathula)","display_name":"A next-generation genotyping process to balance demographic goals and genetic health for the Paddlefish (Polyodon spathula)","publication_year":2026,"publication_date":"2026-11-06","ids":{"openalex":"https://openalex.org/W7225433270","doi":"https://doi.org/10.21203/rs.3.rs-11434343/v1"},"language":"en","primary_location":{"id":"doi:10.21203/rs.3.rs-11434343/v1","doi":"https://doi.org/10.21203/rs.3.rs-11434343/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-11434343/v1","pdf_url":"https://www.researchsquare.com/article/rs-11434343/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.researchsquare.com/article/rs-11434343/latest.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5060266392","display_name":"Leah K. Berkman","orcid":"https://orcid.org/0000-0001-6196-4282","observed_orcids":["https://orcid.org/0000-0001-6196-4282"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Leah K. Berkman","raw_affiliation_strings":["University of Missouri"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Missouri","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161022921","display_name":"Alexandra Clussman","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1318788418","display_name":"Missouri Department of Conservation","ror":"https://ror.org/043c66v57","country_code":"US","type":"archive","lineage":["https://openalex.org/I1318788418"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alexandra Clussman","raw_affiliation_strings":["Missouri Department of Conservation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Missouri Department of Conservation","institution_ids":["https://openalex.org/I1318788418"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092188107","display_name":"Nathan Storts","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1318788418","display_name":"Missouri Department of Conservation","ror":"https://ror.org/043c66v57","country_code":"US","type":"archive","lineage":["https://openalex.org/I1318788418"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nathan Storts","raw_affiliation_strings":["Missouri Department of Conservation"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Missouri Department of Conservation","institution_ids":["https://openalex.org/I1318788418"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161092954","display_name":"Skyler Kramer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Skyler Kramer","raw_affiliation_strings":["University of Missouri"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Missouri","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5161001491","display_name":"Madison Feeler","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madison Feeler","raw_affiliation_strings":["University of Missouri"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Missouri","institution_ids":["https://openalex.org/I76835614"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065510435","display_name":"Edward J. Heist","orcid":"https://orcid.org/0000-0002-9813-8950","observed_orcids":["https://orcid.org/0000-0002-9813-8950"]},"institutions":[{"id":"https://openalex.org/I110378019","display_name":"Southern Illinois University Carbondale","ror":"https://ror.org/049kefs16","country_code":"US","type":"education","lineage":["https://openalex.org/I110378019","https://openalex.org/I2801502357"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward J. Heist","raw_affiliation_strings":["Southern Illinois University Carbondale"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Southern Illinois University Carbondale","institution_ids":["https://openalex.org/I110378019"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5080676459","display_name":"Michael E. Byrne","orcid":"https://orcid.org/0000-0002-9464-9534","observed_orcids":["https://orcid.org/0000-0002-9464-9534"]},"institutions":[{"id":"https://openalex.org/I76835614","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06","country_code":"US","type":"education","lineage":["https://openalex.org/I76835614"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael E. Byrne","raw_affiliation_strings":["University of Missouri"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Missouri","institution_ids":["https://openalex.org/I76835614"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10302","display_name":"Fish Ecology and Management Studies","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11505","display_name":"Reproductive biology and impacts on aquatic species","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1314","display_name":"Physiology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/paddlefish","display_name":"paddlefish","score":0.9750000238418579},{"id":"https://openalex.org/keywords/polyodon-spathula","display_name":"Polyodon spathula","score":1.0},{"id":"https://openalex.org/keywords/genotyping","display_name":"genotyping","score":0.47999998927116394},{"id":"https://openalex.org/keywords/parentage-assignment","display_name":"parentage assignment","score":0.8149999976158142},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.7329999804496765},{"id":"https://openalex.org/keywords/captive-broodstock","display_name":"captive broodstock","score":0.671999990940094},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"effective population size","score":0.9559999704360962},{"id":"https://openalex.org/keywords/paralogous-loci","display_name":"paralogous loci","score":0.7509999871253967},{"id":"https://openalex.org/keywords/whole-genome-doubling","display_name":"whole-genome duplication","score":0.8859999775886536},{"id":"https://openalex.org/keywords/conservation-genetics","display_name":"conservation genetics","score":0.5529999732971191},{"id":"https://openalex.org/keywords/hatchery-reared-fish","display_name":"hatchery-reared fish","score":0.5720000267028809}],"concepts":[{"id":"https://openalex.org/C110175623","wikidata":"https://www.wikidata.org/wiki/Q4284904","display_name":"Broodstock","level":4,"score":0.7394000291824341},{"id":"https://openalex.org/C31467283","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genotyping","level":4,"score":0.7371000051498413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7239000201225281},{"id":"https://openalex.org/C2777782036","wikidata":"https://www.wikidata.org/wiki/Q38978","display_name":"Inbreeding","level":3,"score":0.5899999737739563},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5494999885559082},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.4964999854564667},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.44110000133514404},{"id":"https://openalex.org/C3641667","wikidata":"https://www.wikidata.org/wiki/Q1295959","display_name":"Effective population size","level":4,"score":0.41499999165534973},{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.3727000057697296},{"id":"https://openalex.org/C153279818","wikidata":"https://www.wikidata.org/wiki/Q7618087","display_name":"Stocking","level":2,"score":0.3610999882221222},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.3578999936580658},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.31189998984336853},{"id":"https://openalex.org/C2777636277","wikidata":"https://www.wikidata.org/wiki/Q1350718","display_name":"Captive breeding","level":4,"score":0.3000999987125397},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.2888000011444092},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.27570000290870667},{"id":"https://openalex.org/C2779958227","wikidata":"https://www.wikidata.org/wiki/Q2333552","display_name":"Hatchery","level":3,"score":0.2721000015735626},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.2678999900817871},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.266400009393692},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.25769999623298645},{"id":"https://openalex.org/C169733012","wikidata":"https://www.wikidata.org/wiki/Q1613416","display_name":"Population size","level":3,"score":0.2572999894618988},{"id":"https://openalex.org/C57615671","wikidata":"https://www.wikidata.org/wiki/Q5532911","display_name":"Genetic monitoring","level":5,"score":0.25110000371932983}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.21203/rs.3.rs-11434343/v1","doi":"https://doi.org/10.21203/rs.3.rs-11434343/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-11434343/v1","pdf_url":"https://www.researchsquare.com/article/rs-11434343/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.21203/rs.3.rs-11434343/v1","doi":"https://doi.org/10.21203/rs.3.rs-11434343/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-11434343/v1","pdf_url":"https://www.researchsquare.com/article/rs-11434343/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309568","display_name":"University of Missouri","ror":"https://ror.org/02ymw8z06"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225433270.pdf","grobid_xml":"https://content.openalex.org/works/W7225433270.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1527074409","https://openalex.org/W1823007536","https://openalex.org/W1969746417","https://openalex.org/W1981981738","https://openalex.org/W2004332626","https://openalex.org/W2004444667","https://openalex.org/W2015363330","https://openalex.org/W2046062863","https://openalex.org/W2046172811","https://openalex.org/W2055625638","https://openalex.org/W2068559190","https://openalex.org/W2095833090","https://openalex.org/W2097268696","https://openalex.org/W2111695278","https://openalex.org/W2125362982","https://openalex.org/W2127396309","https://openalex.org/W2132447664","https://openalex.org/W2138440586","https://openalex.org/W2146290595","https://openalex.org/W2146513832","https://openalex.org/W2149616260","https://openalex.org/W2151123843","https://openalex.org/W2162323478","https://openalex.org/W2167371431","https://openalex.org/W2169004799","https://openalex.org/W2169982808","https://openalex.org/W2211842492","https://openalex.org/W2353934480","https://openalex.org/W2460162879","https://openalex.org/W2537906169","https://openalex.org/W2613048345","https://openalex.org/W2760000741","https://openalex.org/W2766763339","https://openalex.org/W2767006000","https://openalex.org/W2906334906","https://openalex.org/W2913743494","https://openalex.org/W2990650386","https://openalex.org/W3043251446","https://openalex.org/W3084189320","https://openalex.org/W3114753064","https://openalex.org/W3212117444","https://openalex.org/W4200417959","https://openalex.org/W4237299048","https://openalex.org/W4366282162","https://openalex.org/W4368366179","https://openalex.org/W4384068670","https://openalex.org/W4406759837","https://openalex.org/W4410392779","https://openalex.org/W7160847256"],"related_works":["https://openalex.org/W4299512861","https://openalex.org/W2490140608","https://openalex.org/W2890617615","https://openalex.org/W2344628434","https://openalex.org/W812702524","https://openalex.org/W3005692306","https://openalex.org/W3126377736","https://openalex.org/W2015363330","https://openalex.org/W2075820646","https://openalex.org/W7058330683"],"abstract_inverted_index":{"Abstract":[0],"Captive":[1],"rearing":[2],"and":[3,26,41,47,78,113,132,170,205,216,224],"reintroduction":[4],"programs":[5],"are":[6,14],"essential":[7],"for":[8,52,59,222],"many":[9],"wild":[10,37,138],"populations,":[11],"but":[12],"they":[13],"often":[15],"associated":[16],"with":[17,192],"negative":[18,34],"genetic":[19,43,71],"outcomes,":[20],"including":[21],"the":[22,66,70,88,105,153,167,199],"loss":[23],"of":[24,73,116,141,166,201],"diversity":[25,72],"adaptation":[27,173],"to":[28,32,36,68,81,104,144,155,174,185,219],"captivity.":[29,175],"Optimizing":[30],"practices":[31],"prevent":[33],"impacts":[35],"populations":[38],"requires":[39],"accurate":[40],"cost-effective":[42],"monitoring.":[44],"We":[45,63],"developed":[46],"tested":[48],"a":[49,82,93,114],"microsatellite":[50],"panel":[51,67,100],"Paddlefish":[53],"(":[54,109,119,160],"Polyodon":[55],"spathula":[56],")":[57,165],"designed":[58],"next":[60],"generation":[61],"sequencing.":[62],"then":[64],"used":[65],"evaluate":[69],"paddlefish":[74,91],"stocked":[75],"in":[76,96,136,190],"2022":[77,106,142],"compared":[79],"results":[80,143,145],"similar":[83],"investigation":[84],"from":[85,146],"2017,":[86],"when":[87],"hatchery":[89],"released":[90],"at":[92],"later":[94],"stage":[95],"development.":[97],"The":[98],"new":[99],"successfully":[101],"assigned":[102],"parentage":[103],"broodstock":[107],"parents":[108],"n":[110,120],"=":[111,121],"29)":[112],"sample":[115],"their":[117],"offspring":[118],"250).":[122],"Fifty":[123],"markers":[124],"satisfied":[125],"our":[126],"error":[127,213],"rate":[128],"threshold":[129],"(<":[130],"0.25)":[131],"Hardy-Weinberg":[133],"Equilibrium":[134],"expectations":[135],"two":[137],"populations.":[139],"Comparison":[140],"2017":[147],"suggest":[148],"that":[149,210],"earlier":[150],"stocking":[151],"increases":[152],"effective":[154],"census":[156],"population":[157,169],"size":[158],"ratio":[159],"N":[161,164],"e":[162],"/":[163],"captive":[168],"likely":[171],"reduces":[172],"Our":[176],"genotyping":[177,212,215],"method":[178],"circumvented":[179],"complex":[180],"bioinformatics":[181,203],"tasks":[182],"typically":[183],"required":[184],"filter":[186],"out":[187],"paralogous":[188],"loci":[189],"species":[191],"recent":[193],"genome":[194],"duplications,":[195],"like":[196],"Paddlefish.":[197],"Further,":[198],"use":[200],"existing":[202],"tools":[204],"maximum":[206],"likelihood":[207],"assignment":[208,217],"methods":[209],"allow":[211],"made":[214],"easy":[218],"implement":[220],"quickly":[221],"conservation":[223],"management":[225],"investigations.":[226]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-11-07T00:00:00"}
