{"id":"https://openalex.org/W7225425012","doi":"https://doi.org/10.64898/2026.11.05.764367","title":"Multi-omics integration reveals candidate genes and molecular mechanisms associated with resistance to sugarcane smut","display_name":"Multi-omics integration reveals candidate genes and molecular mechanisms associated with resistance to sugarcane smut","publication_year":2026,"publication_date":"2026-11-06","ids":{"openalex":"https://openalex.org/W7225425012","doi":"https://doi.org/10.64898/2026.11.05.764367"},"language":"en","primary_location":{"id":"doi:10.64898/2026.11.05.764367","doi":"https://doi.org/10.64898/2026.11.05.764367","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.05.764367","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/06/2026.11.05.764367.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/06/2026.11.05.764367.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5147795933","display_name":"D\u00e9bora Thomazim Dias","orcid":"https://orcid.org/0009-0008-8873-0783","observed_orcids":["https://orcid.org/0009-0008-8873-0783"]},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"D\u00e9bora Thomazim","raw_affiliation_strings":["Universidade Estadual de Campinas (UNICAMP);"],"raw_orcid":"https://orcid.org/0009-0008-8873-0783","affiliations":[{"raw_affiliation_string":"Universidade Estadual de Campinas (UNICAMP);","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017054121","display_name":"Ricardo Jos\u00e9 Gonzaga Pimenta","orcid":"https://orcid.org/0000-0003-0413-7138","observed_orcids":["https://orcid.org/0000-0003-0413-7138"]},"institutions":[{"id":"https://openalex.org/I141766778","display_name":"Teagasc - The Irish Agriculture and Food Development Authority","ror":"https://ror.org/03sx84n71","country_code":"IE","type":"facility","lineage":["https://openalex.org/I141766778"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Ricardo Jos\u00e9 Gonzaga Pimenta","raw_affiliation_strings":["Teagasc, Forestry Development Department;"],"raw_orcid":"https://orcid.org/0000-0003-0413-7138","affiliations":[{"raw_affiliation_string":"Teagasc, Forestry Development Department;","institution_ids":["https://openalex.org/I141766778"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060952116","display_name":"Loren Hamilly de Oliveira Santos","orcid":"https://orcid.org/0000-0001-6052-4429","observed_orcids":["https://orcid.org/0000-0001-6052-4429"]},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luc\u00e9lia de F\u00e1tima Santos","raw_affiliation_strings":["Universidade Estadual Paulista J\u00falio de Mesquita Filho;"],"raw_orcid":"https://orcid.org/0000-0001-6052-4429","affiliations":[{"raw_affiliation_string":"Universidade Estadual Paulista J\u00falio de Mesquita Filho;","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055352763","display_name":"Aline da Costa Lima Moraes","orcid":"https://orcid.org/0000-0002-6985-4392","observed_orcids":["https://orcid.org/0000-0002-6985-4392"]},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Aline da Costa Lima Moraes","raw_affiliation_strings":["Universidade Estadual de Campinas (UNICAMP);"],"raw_orcid":"https://orcid.org/0000-0002-6985-4392","affiliations":[{"raw_affiliation_string":"Universidade Estadual de Campinas (UNICAMP);","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088428348","display_name":"Danilo Augusto Sfor\u00e7a","orcid":"https://orcid.org/0000-0003-2304-8712","observed_orcids":["https://orcid.org/0000-0003-2304-8712"]},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Danilo Augusto Sfor\u00e7a","raw_affiliation_strings":["Universidade Estadual de Campinas (UNICAMP);"],"raw_orcid":"https://orcid.org/0000-0003-2304-8712","affiliations":[{"raw_affiliation_string":"Universidade Estadual de Campinas (UNICAMP);","institution_ids":["https://openalex.org/I181391015"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081100521","display_name":"Luciana Oliveira Souza Anjos","orcid":"https://orcid.org/0000-0003-0081-0647","observed_orcids":["https://orcid.org/0000-0003-0081-0647"]},"institutions":[{"id":"https://openalex.org/I4210125957","display_name":"Agronomical Institute of Campinas","ror":"https://ror.org/02ms7ap07","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210096253","https://openalex.org/I4210125957"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luciana Oliveira Souza Anjos","raw_affiliation_strings":["Instituto Agron\u00f4mico Campinas (IAC)"],"raw_orcid":"https://orcid.org/0000-0003-0081-0647","affiliations":[{"raw_affiliation_string":"Instituto Agron\u00f4mico Campinas (IAC)","institution_ids":["https://openalex.org/I4210125957"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5060149263","display_name":"Ivan Ant\u00f4nio dos Anjos","orcid":"https://orcid.org/0000-0002-5967-8735","observed_orcids":["https://orcid.org/0000-0002-5967-8735"]},"institutions":[{"id":"https://openalex.org/I4210125957","display_name":"Agronomical Institute of Campinas","ror":"https://ror.org/02ms7ap07","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210096253","https://openalex.org/I4210125957"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Ivan Ant\u00f4nio dos Anjos","raw_affiliation_strings":["Instituto Agron\u00f4mico Campinas (IAC)"],"raw_orcid":"https://orcid.org/0000-0002-5967-8735","affiliations":[{"raw_affiliation_string":"Instituto Agron\u00f4mico Campinas (IAC)","institution_ids":["https://openalex.org/I4210125957"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052136601","display_name":"Felipe Brussolo da Silva","orcid":"https://orcid.org/0009-0001-0997-9396","observed_orcids":["https://orcid.org/0009-0001-0997-9396"]},"institutions":[{"id":"https://openalex.org/I879563668","display_name":"Universidade Estadual Paulista (Unesp)","ror":"https://ror.org/00987cb86","country_code":"BR","type":"education","lineage":["https://openalex.org/I879563668"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Felipe Brussolo da Silva","raw_affiliation_strings":["Universidade Estadual Paulista J\u00falio de Mesquita Filho;"],"raw_orcid":"https://orcid.org/0009-0001-0997-9396","affiliations":[{"raw_affiliation_string":"Universidade Estadual Paulista J\u00falio de Mesquita Filho;","institution_ids":["https://openalex.org/I879563668"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074431209","display_name":"Luciana Rossini Pinto","orcid":"https://orcid.org/0000-0002-7369-7609","observed_orcids":["https://orcid.org/0000-0002-7369-7609"]},"institutions":[{"id":"https://openalex.org/I4210125957","display_name":"Agronomical Institute of Campinas","ror":"https://ror.org/02ms7ap07","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210096253","https://openalex.org/I4210125957"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Luciana Rossini Pinto","raw_affiliation_strings":["Instituto Agron\u00f4mico Campinas (IAC)"],"raw_orcid":"https://orcid.org/0000-0002-7369-7609","affiliations":[{"raw_affiliation_string":"Instituto Agron\u00f4mico Campinas (IAC)","institution_ids":["https://openalex.org/I4210125957"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077503251","display_name":"Anete Pereira de Souza","orcid":"https://orcid.org/0000-0003-3831-9829","observed_orcids":["https://orcid.org/0000-0003-3831-9829","https://orcid.org/0000-0003-4357-2685"]},"institutions":[{"id":"https://openalex.org/I181391015","display_name":"Universidade Estadual de Campinas (UNICAMP)","ror":"https://ror.org/04wffgt70","country_code":"BR","type":"education","lineage":["https://openalex.org/I181391015"]}],"countries":["BR"],"is_corresponding":true,"raw_author_name":"Anete Pereira de Souza","raw_affiliation_strings":["Universidade Estadual de Campinas (UNICAMP);"],"raw_orcid":"https://orcid.org/0000-0003-3831-9829","affiliations":[{"raw_affiliation_string":"Universidade Estadual de Campinas (UNICAMP);","institution_ids":["https://openalex.org/I181391015"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077503251"],"corresponding_institution_ids":["https://openalex.org/I181391015"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12431","display_name":"Sugarcane Cultivation and Processing","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12431","display_name":"Sugarcane Cultivation and Processing","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/sugarcane-smut","display_name":"sugarcane smut","score":0.9990000128746033},{"id":"https://openalex.org/keywords/sporisorium-scitamineum","display_name":"Sporisorium scitamineum","score":0.9990000128746033},{"id":"https://openalex.org/keywords/sugarcane","display_name":"sugarcane","score":0.7450000047683716},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.9900000095367432},{"id":"https://openalex.org/keywords/candidate-genes","display_name":"candidate genes","score":0.9599999785423279},{"id":"https://openalex.org/keywords/multi-omics-integration","display_name":"multi-omics integration","score":0.8429999947547913},{"id":"https://openalex.org/keywords/genome-wide-association-study","display_name":"genome-wide association study","score":0.9010000228881836},{"id":"https://openalex.org/keywords/transcriptomics","display_name":"transcriptomics","score":0.9110000133514404},{"id":"https://openalex.org/keywords/snp-markers","display_name":"SNP markers","score":0.7730000019073486},{"id":"https://openalex.org/keywords/marker-trait-association","display_name":"marker-trait association","score":0.7609999775886536},{"id":"https://openalex.org/keywords/immune-signaling","display_name":"immune signaling","score":0.8619999885559082},{"id":"https://openalex.org/keywords/redox-homeostasis","display_name":"redox homeostasis","score":0.9980000257492065},{"id":"https://openalex.org/keywords/genome-maintenance","display_name":"genome maintenance","score":0.8479999899864197},{"id":"https://openalex.org/keywords/structural-strengthening","display_name":"structural strengthening","score":0.6620000004768372},{"id":"https://openalex.org/keywords/plant-pathogen-interaction","display_name":"plant-pathogen interaction","score":0.609000027179718},{"id":"https://openalex.org/keywords/sugarcane-breeding","display_name":"sugarcane breeding","score":0.6620000004768372}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8615000247955322},{"id":"https://openalex.org/C2778443809","wikidata":"https://www.wikidata.org/wiki/Q3297002","display_name":"Smut","level":2,"score":0.8087000250816345},{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.6654000282287598},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.534600019454956},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5246999859809875},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.5080999732017517},{"id":"https://openalex.org/C93678976","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant disease resistance","level":3,"score":0.4909000098705292},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.4652000069618225},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4593999981880188},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.43470001220703125},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.40450000762939453},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.3921000063419342},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.3889000117778778},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37950000166893005},{"id":"https://openalex.org/C2777160741","wikidata":"https://www.wikidata.org/wiki/Q2311855","display_name":"Molecular marker","level":3,"score":0.3596999943256378},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.3560999929904938},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.35249999165534973},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.3513999879360199},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.34689998626708984},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.34220001101493835},{"id":"https://openalex.org/C190789776","wikidata":"https://www.wikidata.org/wiki/Q767511","display_name":"Genetic marker","level":3,"score":0.32919999957084656},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.3237000107765198},{"id":"https://openalex.org/C169282265","wikidata":"https://www.wikidata.org/wiki/Q17145598","display_name":"Molecular breeding","level":3,"score":0.3215000033378601},{"id":"https://openalex.org/C2779227213","wikidata":"https://www.wikidata.org/wiki/Q3954823","display_name":"Marker-assisted selection","level":4,"score":0.30970001220703125},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.30559998750686646},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.30250000953674316},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.29580000042915344},{"id":"https://openalex.org/C2778191974","wikidata":"https://www.wikidata.org/wiki/Q17136949","display_name":"Saccharum","level":2,"score":0.2935999929904938},{"id":"https://openalex.org/C134443026","wikidata":"https://www.wikidata.org/wiki/Q4809584","display_name":"Association mapping","level":5,"score":0.29100000858306885},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.2883000075817108},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.2784000039100647},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.27639999985694885},{"id":"https://openalex.org/C172777353","wikidata":"https://www.wikidata.org/wiki/Q1374271","display_name":"Genetic variability","level":4,"score":0.26809999346733093},{"id":"https://openalex.org/C2779678110","wikidata":"https://www.wikidata.org/wiki/Q764","display_name":"Fungus","level":2,"score":0.26570001244544983}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.11.05.764367","doi":"https://doi.org/10.64898/2026.11.05.764367","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.05.764367","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/06/2026.11.05.764367.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.11.05.764367","doi":"https://doi.org/10.64898/2026.11.05.764367","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.05.764367","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/06/2026.11.05.764367.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.9208999872207642,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G3606220625","display_name":"Engineering Research Center - Plant Health in Sugarcane","funder_award_id":"17/25258-1","funder_id":"https://openalex.org/F4320320997","funder_display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo"}],"funders":[{"id":"https://openalex.org/F4320320997","display_name":"Funda\u00e7\u00e3o de Amparo \u00e0 Pesquisa do Estado de S\u00e3o Paulo","ror":"https://ror.org/02ddkpn78"},{"id":"https://openalex.org/F4320321091","display_name":"Coordena\u00e7\u00e3o de Aperfei\u00e7oamento de Pessoal de N\u00edvel Superior","ror":"https://ror.org/00x0ma614"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225425012.pdf","grobid_xml":"https://content.openalex.org/works/W7225425012.grobid-xml"},"referenced_works_count":99,"referenced_works":["https://openalex.org/W1527878202","https://openalex.org/W1963709443","https://openalex.org/W1966327575","https://openalex.org/W1969353942","https://openalex.org/W1978532912","https://openalex.org/W1980859358","https://openalex.org/W1982252718","https://openalex.org/W2031602607","https://openalex.org/W2041660879","https://openalex.org/W2042221984","https://openalex.org/W2049033930","https://openalex.org/W2055043387","https://openalex.org/W2061034641","https://openalex.org/W2067715889","https://openalex.org/W2089609186","https://openalex.org/W2092135605","https://openalex.org/W2101754950","https://openalex.org/W2107547630","https://openalex.org/W2110035718","https://openalex.org/W2111589087","https://openalex.org/W2114104545","https://openalex.org/W2131112579","https://openalex.org/W2131271579","https://openalex.org/W2138365755","https://openalex.org/W2146290595","https://openalex.org/W2149992227","https://openalex.org/W2164417427","https://openalex.org/W2169861297","https://openalex.org/W2170551349","https://openalex.org/W2179438025","https://openalex.org/W2197124664","https://openalex.org/W2412574955","https://openalex.org/W2431385470","https://openalex.org/W2432815617","https://openalex.org/W2508732111","https://openalex.org/W2510528205","https://openalex.org/W2513914622","https://openalex.org/W2560988223","https://openalex.org/W2577612342","https://openalex.org/W2587182138","https://openalex.org/W2592811885","https://openalex.org/W2594291723","https://openalex.org/W2793698471","https://openalex.org/W2794229103","https://openalex.org/W2800500866","https://openalex.org/W2803616836","https://openalex.org/W2890314848","https://openalex.org/W2895074862","https://openalex.org/W2897966195","https://openalex.org/W2898881560","https://openalex.org/W2901145527","https://openalex.org/W2950801401","https://openalex.org/W2966597746","https://openalex.org/W3038779164","https://openalex.org/W3100907210","https://openalex.org/W3111635578","https://openalex.org/W3131344351","https://openalex.org/W3156738502","https://openalex.org/W3180019916","https://openalex.org/W3188495345","https://openalex.org/W3198684761","https://openalex.org/W3203152051","https://openalex.org/W4200116368","https://openalex.org/W4282827380","https://openalex.org/W4292265446","https://openalex.org/W4294225674","https://openalex.org/W4296049799","https://openalex.org/W4296193480","https://openalex.org/W4306152068","https://openalex.org/W4306391128","https://openalex.org/W4310709907","https://openalex.org/W4312211603","https://openalex.org/W4316673067","https://openalex.org/W4318053837","https://openalex.org/W4320493804","https://openalex.org/W4323315915","https://openalex.org/W4365145945","https://openalex.org/W4366821773","https://openalex.org/W4377104730","https://openalex.org/W4382932404","https://openalex.org/W4384921681","https://openalex.org/W4392662252","https://openalex.org/W4393219011","https://openalex.org/W4394565612","https://openalex.org/W4400099012","https://openalex.org/W4401695848","https://openalex.org/W4401730479","https://openalex.org/W4403638877","https://openalex.org/W4405040927","https://openalex.org/W4406676711","https://openalex.org/W4407389146","https://openalex.org/W4408931017","https://openalex.org/W4411222921","https://openalex.org/W4413426242","https://openalex.org/W4413930071","https://openalex.org/W4416121494","https://openalex.org/W4416720250","https://openalex.org/W4417498501","https://openalex.org/W7124732083"],"related_works":["https://openalex.org/W4413930071","https://openalex.org/W4304890776","https://openalex.org/W4389855346","https://openalex.org/W4411487923","https://openalex.org/W4408919617","https://openalex.org/W2380954816","https://openalex.org/W4384921681","https://openalex.org/W7130587389","https://openalex.org/W4379115029","https://openalex.org/W3180019916"],"abstract_inverted_index":{"Sugarcane":[0],"smut,":[1],"caused":[2],"by":[3],"the":[4,12,29,37,53,72,138],"fungus":[5],"Sporisorium":[6],"scitamineum":[7,95],"(Syd.),":[8],"is":[9,18],"one":[10],"of":[11,20,31,40,56,74,82,133,140],"main":[13],"diseases":[14],"affecting":[15],"sugarcane":[16,41,67,127,171],"and":[17,44,78,91,153,165],"capable":[19],"causing":[21],"severe":[22],"yield":[23],"losses":[24],"in":[25,144],"susceptible":[26],"varieties.":[27],"Given":[28],"limitations":[30],"classical":[32],"breeding,":[33],"mainly":[34],"due":[35],"to":[36,69,109,129],"genetic":[38,54],"complexity":[39],"cultivars,":[42],"molecular":[43,160],"omics":[45],"approaches":[46],"have":[47],"gained":[48],"increasing":[49],"prominence":[50],"for":[51,162],"studying":[52],"basis":[55],"traits":[57],"such":[58],"as":[59],"disease":[60],"resistance.":[61,176],"In":[62,113],"this":[63],"context,":[64],"we":[65],"investigated":[66],"resistance":[68],"smut":[70,175],"through":[71,105],"integration":[73,132],"association":[75,107],"mapping":[76],"methods":[77],"transcriptomics.":[79],"A":[80],"panel":[81],"155":[83],"genotypes":[84],"was":[85],"genotyped":[86],"with":[87,93,173],"33,335":[88],"SNP":[89],"markers":[90],"inoculated":[92],"S.":[94],"generating":[96],"three":[97],"phenotypic":[98],"variables.":[99],"These":[100,156],"data":[101,136],"were":[102,117],"jointly":[103],"analyzed":[104],"genome-wide":[106],"analyses":[108,116],"identify":[110],"marker-trait":[111],"associations.":[112],"addition,":[114],"transcriptomic":[115],"performed":[118],"using":[119],"publicly":[120],"available":[121],"datasets":[122],"from":[123],"four":[124],"studies":[125],"evaluating":[126],"responses":[128],"smut.":[130],"The":[131],"these":[134],"multi-omics":[135],"enabled":[137],"identification":[139],"candidate":[141],"genes":[142],"involved":[143],"structural":[145],"reinforcement,":[146],"immune":[147],"signaling,":[148],"redox":[149],"homeostasis,":[150],"genome":[151],"maintenance,":[152],"cellular":[154],"adaptation.":[155],"findings":[157],"provide":[158],"valuable":[159],"resources":[161],"functional":[163],"validation":[164],"breeding":[166],"strategies":[167],"aimed":[168],"at":[169],"developing":[170],"cultivars":[172],"enhanced":[174]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-11-07T00:00:00"}