{"id":"https://openalex.org/W7225422145","doi":"https://doi.org/10.29261/pakvetj/2026.236","title":"Genetic Diversity, Antimicrobial Resistance, and Pathogenic Potential of Pulmonary Escherichia coli Isolates from Forest Musk Deer with Fatal Hemorrhagic Pneumonia","display_name":"Genetic Diversity, Antimicrobial Resistance, and Pathogenic Potential of Pulmonary Escherichia coli Isolates from Forest Musk Deer with Fatal Hemorrhagic Pneumonia","publication_year":2026,"publication_date":"2026-11-06","ids":{"openalex":"https://openalex.org/W7225422145","doi":"https://doi.org/10.29261/pakvetj/2026.236"},"language":"en","primary_location":{"id":"doi:10.29261/pakvetj/2026.236","doi":"https://doi.org/10.29261/pakvetj/2026.236","is_oa":true,"landing_page_url":"https://doi.org/10.29261/pakvetj/2026.236","pdf_url":"https://doi.org/10.29261/pakvetj/2026.236","source":{"id":"https://openalex.org/S12629481","display_name":"Pakistan Veterinary Journal","issn_l":"0253-8318","issn":["0253-8318","2074-7764"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319262","host_organization_name":"University of Agriculture Faisalabad","host_organization_lineage":["https://openalex.org/P4310319262"],"host_organization_lineage_names":["University of Agriculture Faisalabad"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pakistan Veterinary Journal","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.29261/pakvetj/2026.236","any_repository_has_fulltext":false},"authorships":[],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":15000,"currency":"PKR","value_usd":300},"apc_paid":{"value":15000,"currency":"PKR","value_usd":300},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9179999828338623,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10943","display_name":"Escherichia coli research studies","score":0.9179999828338623,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.057500001043081284,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.019500000402331352,"subfield":{"id":"https://openalex.org/subfields/2726","display_name":"Microbiology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/forest-musk-deer","display_name":"forest musk deer","score":0.9829999804496765},{"id":"https://openalex.org/keywords/moschus-berezovskii","display_name":"Moschus berezovskii","score":0.9990000128746033},{"id":"https://openalex.org/keywords/hemorrhagic-pneumonia","display_name":"hemorrhagic pneumonia","score":0.9779999852180481},{"id":"https://openalex.org/keywords/escherichia-coli","display_name":"Escherichia coli","score":0.9879999756813049},{"id":"https://openalex.org/keywords/antimicrobial-resistance","display_name":"antimicrobial resistance","score":0.9860000014305115},{"id":"https://openalex.org/keywords/multilocus-sequence-typing","display_name":"multilocus sequence typing","score":0.8479999899864197},{"id":"https://openalex.org/keywords/pasteurella-multocida","display_name":"Pasteurella multocida","score":0.8679999709129333},{"id":"https://openalex.org/keywords/acinetobacter-baumannii","display_name":"Acinetobacter baumannii","score":1.0},{"id":"https://openalex.org/keywords/metatranscriptomics","display_name":"metatranscriptomics","score":0.7490000128746033},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"pathogenicity","score":0.4880000054836273},{"id":"https://openalex.org/keywords/captive-deer","display_name":"captive deer","score":0.5070000290870667},{"id":"https://openalex.org/keywords/disease-surveillance","display_name":"disease surveillance","score":0.44600000977516174}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.713100016117096},{"id":"https://openalex.org/C2776796551","wikidata":"https://www.wikidata.org/wiki/Q310656","display_name":"Pasteurella multocida","level":3,"score":0.67330002784729},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6723999977111816},{"id":"https://openalex.org/C547475151","wikidata":"https://www.wikidata.org/wiki/Q25419","display_name":"Escherichia coli","level":3,"score":0.6226000189781189},{"id":"https://openalex.org/C2777914695","wikidata":"https://www.wikidata.org/wiki/Q12192","display_name":"Pneumonia","level":2,"score":0.5555999875068665},{"id":"https://openalex.org/C2776021129","wikidata":"https://www.wikidata.org/wiki/Q244150","display_name":"Ampicillin","level":3,"score":0.5324000120162964},{"id":"https://openalex.org/C2776315533","wikidata":"https://www.wikidata.org/wiki/Q3241189","display_name":"Acinetobacter baumannii","level":4,"score":0.5267000198364258},{"id":"https://openalex.org/C94665300","wikidata":"https://www.wikidata.org/wiki/Q63391344","display_name":"Antibiotic resistance","level":3,"score":0.5163999795913696},{"id":"https://openalex.org/C4937899","wikidata":"https://www.wikidata.org/wiki/Q68541106","display_name":"Antimicrobial","level":2,"score":0.47350001335144043},{"id":"https://openalex.org/C2778716008","wikidata":"https://www.wikidata.org/wiki/Q2589418","display_name":"Pasteurellosis","level":4,"score":0.45980000495910645},{"id":"https://openalex.org/C2779923002","wikidata":"https://www.wikidata.org/wiki/Q2477372","display_name":"Pasteurella","level":3,"score":0.41850000619888306},{"id":"https://openalex.org/C2778523567","wikidata":"https://www.wikidata.org/wiki/Q310457","display_name":"Acinetobacter","level":3,"score":0.39800000190734863},{"id":"https://openalex.org/C2776178081","wikidata":"https://www.wikidata.org/wiki/Q3286546","display_name":"Respiratory disease","level":3,"score":0.3443000018596649},{"id":"https://openalex.org/C2777714996","wikidata":"https://www.wikidata.org/wiki/Q7886","display_name":"Lung","level":2,"score":0.3328999876976013},{"id":"https://openalex.org/C2780942790","wikidata":"https://www.wikidata.org/wiki/Q372016","display_name":"Pathogenesis","level":2,"score":0.3327000141143799},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.3156999945640564},{"id":"https://openalex.org/C137627325","wikidata":"https://www.wikidata.org/wiki/Q156318","display_name":"Etiology","level":2,"score":0.31290000677108765},{"id":"https://openalex.org/C2778883795","wikidata":"https://www.wikidata.org/wiki/Q804517","display_name":"Pathogenic bacteria","level":3,"score":0.3068999946117401},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.3034000098705292},{"id":"https://openalex.org/C2776985332","wikidata":"https://www.wikidata.org/wiki/Q311055","display_name":"Escherichia","level":4,"score":0.29420000314712524},{"id":"https://openalex.org/C2776345407","wikidata":"https://www.wikidata.org/wiki/Q3776920","display_name":"Bacterial pneumonia","level":3,"score":0.2700999975204468},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.26660001277923584},{"id":"https://openalex.org/C2781209916","wikidata":"https://www.wikidata.org/wiki/Q3215756","display_name":"Typing","level":2,"score":0.26269999146461487},{"id":"https://openalex.org/C501593827","wikidata":"https://www.wikidata.org/wiki/Q12187","display_name":"Antibiotics","level":2,"score":0.26010000705718994}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.29261/pakvetj/2026.236","doi":"https://doi.org/10.29261/pakvetj/2026.236","is_oa":true,"landing_page_url":"https://doi.org/10.29261/pakvetj/2026.236","pdf_url":"https://doi.org/10.29261/pakvetj/2026.236","source":{"id":"https://openalex.org/S12629481","display_name":"Pakistan Veterinary Journal","issn_l":"0253-8318","issn":["0253-8318","2074-7764"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319262","host_organization_name":"University of Agriculture Faisalabad","host_organization_lineage":["https://openalex.org/P4310319262"],"host_organization_lineage_names":["University of Agriculture Faisalabad"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pakistan Veterinary Journal","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.29261/pakvetj/2026.236","doi":"https://doi.org/10.29261/pakvetj/2026.236","is_oa":true,"landing_page_url":"https://doi.org/10.29261/pakvetj/2026.236","pdf_url":"https://doi.org/10.29261/pakvetj/2026.236","source":{"id":"https://openalex.org/S12629481","display_name":"Pakistan Veterinary Journal","issn_l":"0253-8318","issn":["0253-8318","2074-7764"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","poland-70","russia-white-list-2"],"host_organization":"https://openalex.org/P4310319262","host_organization_name":"University of Agriculture Faisalabad","host_organization_lineage":["https://openalex.org/P4310319262"],"host_organization_lineage_names":["University of Agriculture Faisalabad"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pakistan Veterinary Journal","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.9476000070571899}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225422145.pdf","grobid_xml":"https://content.openalex.org/works/W7225422145.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2348846675","https://openalex.org/W7166528786","https://openalex.org/W2497503496","https://openalex.org/W2371592863","https://openalex.org/W4389043112","https://openalex.org/W4409291462","https://openalex.org/W4403684077","https://openalex.org/W3210178994","https://openalex.org/W2604852734","https://openalex.org/W4412785168"],"abstract_inverted_index":{"Forest":[0],"musk":[1,26,49,158],"deer":[2,50],"(Moschus":[3],"berezovskii)":[4],"is":[5],"an":[6,148],"endangered":[7],"species":[8,96],"with":[9,69],"high":[10,19,86],"medicinal":[11],"value.Hemorrhagic":[12],"pneumonia,":[13],"characterized":[14],"by":[15],"acute":[16],"onset":[17],"and":[18,35,58,80,127,153,166],"mortality,":[20],"frequently":[21],"occurs":[22],"in":[23,112,144,156],"captive":[24,30],"forest":[25,48,157],"deer,":[27,159],"seriously":[28],"restricting":[29],"breeding.However,":[31],"its":[32],"etiological":[33],"agents":[34],"pathogenesis":[36],"remain":[37],"unclear.In":[38],"this":[39],"study,":[40],"43":[41],"lung":[42,142],"tissue":[43],"samples":[44,65],"were":[45],"collected":[46],"from":[47],"that":[51],"died":[52],"of":[53,62],"hemorrhagic":[54,141,154],"pneumonia":[55,155],"between":[56,150],"2023":[57],"2025.Exploratory":[59],"metatranscriptomic":[60],"analysis":[61],"3":[63],"selected":[64],"indicated":[66],"bacterial":[67],"predominance,":[68],"several":[70],"opportunistic":[71],"pathogens,":[72],"including":[73,124],"Escherichia":[74],"coli":[75,91,152],"(E.coli),":[76],"Pasteurella":[77],"multocida":[78],"(P.multocida),":[79],"Acinetobacter":[81],"baumannii":[82],"(A.baumannii),":[83],"showing":[84],"relatively":[85],"abundance.Bacterial":[87],"isolation":[88],"identified":[89,118],"E.":[90,151],"as":[92,129,131],"the":[93,136],"most":[94],"frequent":[95],"(39/89;":[97],"43.82%).The":[98],"isolates":[99,139],"exhibited":[100],"resistance":[101,109],"to":[102],"multiple":[103],"commonly":[104],"used":[105],"antimicrobials;":[106],"ampicillin":[107],"(AMP)":[108],"exceeded":[110],"50%":[111],"each":[113],"year.Multilocus":[114],"sequence":[115,121],"typing":[116],"(MLST)":[117],"16":[119],"assigned":[120],"types":[122],"(STs),":[123],"ST357,":[125],"ST224,":[126],"ST95,":[128],"well":[130],"4":[132],"unassigned":[133],"profiles":[134],"among":[135],"39":[137],"isolates.Representative":[138],"induced":[140],"lesions":[143],"mice.These":[145],"findings":[146],"indicate":[147],"association":[149],"providing":[160],"a":[161],"basis":[162],"for":[163],"disease":[164],"surveillance":[165],"control.":[167]},"counts_by_year":[],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2026-11-07T00:00:00"}