{"id":"https://openalex.org/W7225374751","doi":"https://doi.org/10.17863/cam.135940","title":"The ancient evolution of human pathogens","display_name":"The ancient evolution of human pathogens","publication_year":2026,"publication_date":"2026-11-06","ids":{"openalex":"https://openalex.org/W7225374751","doi":"https://doi.org/10.17863/cam.135940"},"language":"en","primary_location":{"id":"pmh:oai:www.repository.cam.ac.uk:1810/409789","doi":null,"is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/409789","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.repository.cam.ac.uk/handle/1810/409789","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077987295","display_name":"Simon Underdown","orcid":"https://orcid.org/0000-0001-6056-2353","observed_orcids":["https://orcid.org/0000-0001-6056-2353"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Houldcroft, Charlotte","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-6056-2353","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5138779010","display_name":"Christina Warinner","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Warinner, Christina","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13409","display_name":"Paleopathology and ancient diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1204","display_name":"Archeology (arts and humanities)"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T13409","display_name":"Paleopathology and ancient diseases","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1204","display_name":"Archeology (arts and humanities)"},"field":{"id":"https://openalex.org/fields/12","display_name":"Arts and Humanities"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10087","display_name":"Archaeology and ancient environmental studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/3302","display_name":"Archeology"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/paleogenomics","display_name":"paleogenomics","score":0.921999990940094},{"id":"https://openalex.org/keywords/ancient-dna","display_name":"ancient DNA","score":0.7599999904632568},{"id":"https://openalex.org/keywords/human-infectious-diseases","display_name":"human infectious diseases","score":0.8619999885559082},{"id":"https://openalex.org/keywords/coinfection","display_name":"co-infection","score":0.7820000052452087},{"id":"https://openalex.org/keywords/palaeoproteomics","display_name":"palaeoproteomics","score":0.8420000076293945},{"id":"https://openalex.org/keywords/pandemic","display_name":"pandemic","score":0.6069999933242798},{"id":"https://openalex.org/keywords/history-of-infectious-disease","display_name":"infectious disease history","score":0.6589999794960022}],"concepts":[{"id":"https://openalex.org/C189338579","wikidata":"https://www.wikidata.org/wiki/Q290447","display_name":"Ancient DNA","level":3,"score":0.6664999723434448},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.6193000078201294},{"id":"https://openalex.org/C89623803","wikidata":"https://www.wikidata.org/wiki/Q12184","display_name":"Pandemic","level":5,"score":0.576200008392334},{"id":"https://openalex.org/C24527192","wikidata":"https://www.wikidata.org/wiki/Q17149729","display_name":"Human pathogen","level":3,"score":0.5407999753952026},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4684999883174896},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4546999931335449},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.44609999656677246},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.36800000071525574},{"id":"https://openalex.org/C2988867146","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Human disease","level":3,"score":0.3614000082015991},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.3361999988555908},{"id":"https://openalex.org/C95124753","wikidata":"https://www.wikidata.org/wiki/Q875686","display_name":"Environmental ethics","level":1,"score":0.3228999972343445},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32109999656677246},{"id":"https://openalex.org/C2779987252","wikidata":"https://www.wikidata.org/wiki/Q635162","display_name":"Hominidae","level":3,"score":0.3174000084400177},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.31220000982284546},{"id":"https://openalex.org/C95457728","wikidata":"https://www.wikidata.org/wiki/Q309","display_name":"History","level":0,"score":0.3066999912261963},{"id":"https://openalex.org/C84084929","wikidata":"https://www.wikidata.org/wiki/Q339557","display_name":"Human biology","level":2,"score":0.3021000027656555},{"id":"https://openalex.org/C2988562018","wikidata":"https://www.wikidata.org/wiki/Q1063","display_name":"Biological evolution","level":2,"score":0.2957000136375427},{"id":"https://openalex.org/C185554395","wikidata":"https://www.wikidata.org/wiki/Q83944","display_name":"Human evolution","level":2,"score":0.2897000014781952},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.2793000042438507},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.2786000072956085},{"id":"https://openalex.org/C3006700255","wikidata":"https://www.wikidata.org/wiki/Q81068910","display_name":"2019-20 coronavirus outbreak","level":3,"score":0.275299996137619},{"id":"https://openalex.org/C199033989","wikidata":"https://www.wikidata.org/wiki/Q1318295","display_name":"Narrative","level":2,"score":0.27410000562667847},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.2736000120639801},{"id":"https://openalex.org/C2987857752","wikidata":"https://www.wikidata.org/wiki/Q12147","display_name":"Human health","level":2,"score":0.2612999975681305}],"mesh":[],"locations_count":2,"locations":[{"id":"pmh:oai:www.repository.cam.ac.uk:1810/409789","doi":null,"is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/409789","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"doi:10.17863/cam.135940","doi":"https://doi.org/10.17863/cam.135940","is_oa":true,"landing_page_url":"https://doi.org/10.17863/cam.135940","pdf_url":null,"source":{"id":"https://openalex.org/S7407050737","display_name":"Apollo","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"pmh:oai:www.repository.cam.ac.uk:1810/409789","doi":null,"is_oa":true,"landing_page_url":"https://www.repository.cam.ac.uk/handle/1810/409789","pdf_url":null,"source":{"id":"https://openalex.org/S4306401777","display_name":"Apollo (University of Cambridge)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I241749","host_organization_name":"University of Cambridge","host_organization_lineage":["https://openalex.org/I241749"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.8048999905586243}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4416298518","https://openalex.org/W2900099073","https://openalex.org/W2552954662","https://openalex.org/W2034633030","https://openalex.org/W4416942085","https://openalex.org/W2912935905","https://openalex.org/W2930841567","https://openalex.org/W4244223405","https://openalex.org/W4317037783","https://openalex.org/W4394741759"],"abstract_inverted_index":{"Infectious":[0],"diseases":[1],"have":[2],"profoundly":[3],"shaped":[4],"human":[5,54],"culture,":[6],"behaviour":[7],"and":[8,25,31,70,86,101],"ecology.":[9],"Advances":[10],"in":[11],"ancient":[12,87],"pathogen":[13,33],"genomics":[14],"are":[15],"now":[16],"revealing":[17,98],"not":[18],"just":[19],"the":[20,53,62,84,99],"presence":[21],"of":[22,65,83,104],"past":[23],"pathogens":[24],"disease":[26,56,106],"outbreaks,":[27],"but":[28],"also":[29],"co-infections":[30],"diverse":[32],"lineages\u2013some":[34],"extinct\u2013with":[35],"different":[36],"geographical":[37],"distributions":[38],"than":[39],"their":[40],"modern":[41],"relatives.":[42],"Here":[43],"we":[44,80,108],"review":[45],"recent":[46],"contributions":[47],"archaeogenomics":[48],"has":[49],"made":[50],"to":[51,74,92],"understanding":[52],"infectious":[55,68,105],"landscape.":[57],"Ancient":[58],"DNA":[59],"is":[60,90],"unearthing":[61],"hidden":[63],"narratives":[64],"culturally":[66],"consequential":[67],"agents,":[69],"future":[71,111],"research":[72],"promises":[73],"provide":[75],"even":[76],"greater":[77],"insights,":[78],"as":[79,107],"take":[81],"advantage":[82],"palaeoproteome":[85],"RNA.":[88],"Archaeoscience":[89],"proving":[91],"be":[93],"a":[94],"powerful":[95],"tool":[96],"for":[97,110],"biological":[100],"social":[102],"dimensions":[103],"prepare":[109],"pandemic":[112],"threats.":[113]},"counts_by_year":[],"updated_date":"2026-11-10T11:39:43.021295","created_date":"2026-11-07T00:00:00"}
