{"id":"https://openalex.org/W7225323950","doi":"https://doi.org/10.64898/2026.11.03.764016","title":"Genomic prediction of resistance to Phytophthora megakarya in cacao from a sparse host-pathogen screen","display_name":"Genomic prediction of resistance to Phytophthora megakarya in cacao from a sparse host-pathogen screen","publication_year":2026,"publication_date":"2026-11-05","ids":{"openalex":"https://openalex.org/W7225323950","doi":"https://doi.org/10.64898/2026.11.03.764016"},"language":"en","primary_location":{"id":"doi:10.64898/2026.11.03.764016","doi":"https://doi.org/10.64898/2026.11.03.764016","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.03.764016","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/05/2026.11.03.764016.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/05/2026.11.03.764016.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5056276087","display_name":"Ina Schlath\u00f6lter","orcid":"https://orcid.org/0000-0002-7604-3993","observed_orcids":["https://orcid.org/0000-0002-7604-3993"]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ina Schlathoelter","raw_affiliation_strings":["University of Florida;"],"raw_orcid":"https://orcid.org/0000-0002-7604-3993","affiliations":[{"raw_affiliation_string":"University of Florida;","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047402590","display_name":"Andrew J. Gitto","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andrew J. Gitto","raw_affiliation_strings":["University of Florida;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Florida;","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058257248","display_name":"Adriana Arciniegas-Leal","orcid":"https://orcid.org/0000-0002-1225-5639","observed_orcids":["https://orcid.org/0000-0002-1225-5639"]},"institutions":[{"id":"https://openalex.org/I1282913463","display_name":"Centro Agronomico Tropical de Investigacion y Ensenanza Catie","ror":"https://ror.org/05tkvpg69","country_code":"CR","type":"education","lineage":["https://openalex.org/I1282913463"]},{"id":"https://openalex.org/I4210133545","display_name":"Canadian AIDS Treatment Information Exchange","ror":"https://ror.org/03fwae819","country_code":"CA","type":"nonprofit","lineage":["https://openalex.org/I4210133545"]}],"countries":["CA","CR"],"is_corresponding":false,"raw_author_name":"Adriana L. Arciniegas","raw_affiliation_strings":["CATIE;"],"raw_orcid":"https://orcid.org/0000-0002-1225-5639","affiliations":[{"raw_affiliation_string":"CATIE;","institution_ids":["https://openalex.org/I1282913463","https://openalex.org/I4210133545"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092373372","display_name":"Mariana Herrera-Corzo","orcid":"https://orcid.org/0000-0002-4642-1930","observed_orcids":["https://orcid.org/0000-0002-4642-1930"]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mariana Herrera Corzo","raw_affiliation_strings":["University of Florida;"],"raw_orcid":"https://orcid.org/0000-0002-4642-1930","affiliations":[{"raw_affiliation_string":"University of Florida;","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083976135","display_name":"Oluwaseun Olawale Kolawole","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I2801944787","display_name":"Cocoa Research Institute of Nigeria","ror":"https://ror.org/00xsc8q85","country_code":"NG","type":"facility","lineage":["https://openalex.org/I2801944787"]}],"countries":["NG"],"is_corresponding":false,"raw_author_name":"Oluwaseun Olawale Kolawole","raw_affiliation_strings":["CRIN;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CRIN;","institution_ids":["https://openalex.org/I2801944787"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075362334","display_name":"Erica M. Goss","orcid":"https://orcid.org/0000-0003-3512-2107","observed_orcids":["https://orcid.org/0000-0003-3512-2107"]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Erica M. Goss","raw_affiliation_strings":["University of Florida;"],"raw_orcid":"https://orcid.org/0000-0003-3512-2107","affiliations":[{"raw_affiliation_string":"University of Florida;","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017505734","display_name":"Donald S. Livingstone","orcid":"https://orcid.org/0009-0006-6617-7644","observed_orcids":["https://orcid.org/0009-0006-6617-7644"]},"institutions":[{"id":"https://openalex.org/I4405263185","display_name":"Mars Wrigley Confectionery","ror":"https://ror.org/03n8r7751","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968","https://openalex.org/I4405263185"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donald Livingstone","raw_affiliation_strings":["Mars Snacking;"],"raw_orcid":"https://orcid.org/0009-0006-6617-7644","affiliations":[{"raw_affiliation_string":"Mars Snacking;","institution_ids":["https://openalex.org/I4405263185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001208552","display_name":"Alana J. Firl","orcid":"https://orcid.org/0009-0008-4807-5948","observed_orcids":["https://orcid.org/0009-0008-4807-5948"]},"institutions":[{"id":"https://openalex.org/I4405263185","display_name":"Mars Wrigley Confectionery","ror":"https://ror.org/03n8r7751","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968","https://openalex.org/I4405263185"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alana Firl","raw_affiliation_strings":["Mars Snacking;"],"raw_orcid":"https://orcid.org/0009-0008-4807-5948","affiliations":[{"raw_affiliation_string":"Mars Snacking;","institution_ids":["https://openalex.org/I4405263185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068537279","display_name":"Donna R. Henderson","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210104270","display_name":"McCormick (United States)","ror":"https://ror.org/01ftbgh03","country_code":"US","type":"company","lineage":["https://openalex.org/I4210104270"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Donna R. Henderson","raw_affiliation_strings":["McCormick & Company"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"McCormick & Company","institution_ids":["https://openalex.org/I4210104270"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018796128","display_name":"Derek R. Drost","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405263185","display_name":"Mars Wrigley Confectionery","ror":"https://ror.org/03n8r7751","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968","https://openalex.org/I4405263185"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Derek R. Drost","raw_affiliation_strings":["Mars Snacking;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mars Snacking;","institution_ids":["https://openalex.org/I4405263185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5160760758","display_name":"Dayana Rodezno","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405263185","display_name":"Mars Wrigley Confectionery","ror":"https://ror.org/03n8r7751","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968","https://openalex.org/I4405263185"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dayana Rodezno","raw_affiliation_strings":["Mars Snacking;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mars Snacking;","institution_ids":["https://openalex.org/I4405263185"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014050233","display_name":"Jean\u2010Philippe Marelli","orcid":"https://orcid.org/0000-0003-2791-7567","observed_orcids":["https://orcid.org/0000-0003-2791-7567"]},"institutions":[{"id":"https://openalex.org/I4405263185","display_name":"Mars Wrigley Confectionery","ror":"https://ror.org/03n8r7751","country_code":"US","type":"company","lineage":["https://openalex.org/I4210113968","https://openalex.org/I4405263185"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Philippe Marelli","raw_affiliation_strings":["Mars Snacking;"],"raw_orcid":"https://orcid.org/0000-0003-2791-7567","affiliations":[{"raw_affiliation_string":"Mars Snacking;","institution_ids":["https://openalex.org/I4405263185"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5058031151","display_name":"Jeremy Todd Brawner","orcid":"https://orcid.org/0000-0003-3877-6253","observed_orcids":["https://orcid.org/0000-0003-3877-6253"]},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jeremy T. Brawner","raw_affiliation_strings":["University of Florida;"],"raw_orcid":"https://orcid.org/0000-0003-3877-6253","affiliations":[{"raw_affiliation_string":"University of Florida;","institution_ids":["https://openalex.org/I33213144"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5056276087"],"corresponding_institution_ids":["https://openalex.org/I33213144"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11771","display_name":"Plant Pathogens and Resistance","score":0.9185000061988831,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11771","display_name":"Plant Pathogens and Resistance","score":0.9185000061988831,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13069","display_name":"Cocoa and Sweet Potato Agronomy","score":0.03020000085234642,"subfield":{"id":"https://openalex.org/subfields/1108","display_name":"Horticulture"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.014999999664723873,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phytophthora-megakarya","display_name":"Phytophthora megakarya","score":0.9760000109672546},{"id":"https://openalex.org/keywords/black-pod-rot","display_name":"black pod rot","score":0.9200000166893005},{"id":"https://openalex.org/keywords/theobroma-cacao","display_name":"Theobroma cacao","score":0.9990000128746033},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.9160000085830688},{"id":"https://openalex.org/keywords/genomic-prediction","display_name":"genomic prediction","score":0.9539999961853027},{"id":"https://openalex.org/keywords/host-pathogen-interaction","display_name":"host-pathogen interaction","score":0.7749999761581421},{"id":"https://openalex.org/keywords/virulence-genes","display_name":"virulence genes","score":0.7689999938011169},{"id":"https://openalex.org/keywords/snp-genotyping","display_name":"SNP genotyping","score":0.7409999966621399},{"id":"https://openalex.org/keywords/linear-mixed-models","display_name":"linear mixed models","score":0.7950000166893005},{"id":"https://openalex.org/keywords/genomic-relationships","display_name":"genomic relationships","score":0.5360000133514404},{"id":"https://openalex.org/keywords/ancestry-analysis","display_name":"ancestry analysis","score":0.5080000162124634},{"id":"https://openalex.org/keywords/disease-screening","display_name":"disease screening","score":0.39500001072883606}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.883400022983551},{"id":"https://openalex.org/C2780816236","wikidata":"https://www.wikidata.org/wiki/Q162078","display_name":"Theobroma","level":2,"score":0.7024000287055969},{"id":"https://openalex.org/C2780100698","wikidata":"https://www.wikidata.org/wiki/Q311294","display_name":"Phytophthora","level":2,"score":0.5515000224113464},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5486999750137329},{"id":"https://openalex.org/C81089528","wikidata":"https://www.wikidata.org/wiki/Q5134986","display_name":"clone (Java method)","level":3,"score":0.4968999922275543},{"id":"https://openalex.org/C2777451446","wikidata":"https://www.wikidata.org/wiki/Q3492461","display_name":"Phytophthora palmivora","level":3,"score":0.4697999954223633},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.45969998836517334},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.45579999685287476},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.42320001125335693},{"id":"https://openalex.org/C93678976","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant disease resistance","level":3,"score":0.4219000041484833},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4106000065803528},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3504999876022339},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.34540000557899475},{"id":"https://openalex.org/C2777968112","wikidata":"https://www.wikidata.org/wiki/Q3382075","display_name":"Phytophthora ramorum","level":3,"score":0.32109999656677246},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.3012000024318695},{"id":"https://openalex.org/C119054055","wikidata":"https://www.wikidata.org/wiki/Q1576681","display_name":"Indel","level":5,"score":0.29760000109672546},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.29490000009536743},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.29179999232292175},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.2903999984264374},{"id":"https://openalex.org/C130073038","wikidata":"https://www.wikidata.org/wiki/Q1211967","display_name":"Phenotypic trait","level":4,"score":0.2759000062942505},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2741999924182892},{"id":"https://openalex.org/C180032290","wikidata":"https://www.wikidata.org/wiki/Q1664296","display_name":"Inoculation","level":2,"score":0.2696000039577484},{"id":"https://openalex.org/C2778120384","wikidata":"https://www.wikidata.org/wiki/Q1502125","display_name":"Genetic relationship","level":4,"score":0.26460000872612},{"id":"https://openalex.org/C134387633","wikidata":"https://www.wikidata.org/wiki/Q11395","display_name":"Domestication","level":2,"score":0.2621999979019165},{"id":"https://openalex.org/C139275648","wikidata":"https://www.wikidata.org/wiki/Q17134011","display_name":"SNP","level":5,"score":0.26159998774528503},{"id":"https://openalex.org/C172777353","wikidata":"https://www.wikidata.org/wiki/Q1374271","display_name":"Genetic variability","level":4,"score":0.2533000111579895},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.25049999356269836}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.11.03.764016","doi":"https://doi.org/10.64898/2026.11.03.764016","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.03.764016","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/05/2026.11.03.764016.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.11.03.764016","doi":"https://doi.org/10.64898/2026.11.03.764016","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.11.03.764016","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/11/05/2026.11.03.764016.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.991100013256073,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309633","display_name":"Mars","ror":"https://ror.org/028vrr082"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7225323950.pdf","grobid_xml":"https://content.openalex.org/works/W7225323950.grobid-xml"},"referenced_works_count":76,"referenced_works":["https://openalex.org/W1596062789","https://openalex.org/W1747553234","https://openalex.org/W1765857283","https://openalex.org/W1768489597","https://openalex.org/W1986241855","https://openalex.org/W2005781291","https://openalex.org/W2013325146","https://openalex.org/W2015060741","https://openalex.org/W2030126026","https://openalex.org/W2032440961","https://openalex.org/W2046076301","https://openalex.org/W2047236290","https://openalex.org/W2061414704","https://openalex.org/W2067715889","https://openalex.org/W2079413751","https://openalex.org/W2084060145","https://openalex.org/W2093577806","https://openalex.org/W2095354893","https://openalex.org/W2096832965","https://openalex.org/W2104407474","https://openalex.org/W2113626726","https://openalex.org/W2116321537","https://openalex.org/W2124894254","https://openalex.org/W2143662857","https://openalex.org/W2149836365","https://openalex.org/W2157327488","https://openalex.org/W2157545049","https://openalex.org/W2189510244","https://openalex.org/W2192335871","https://openalex.org/W2211963229","https://openalex.org/W2241764905","https://openalex.org/W2277315452","https://openalex.org/W2473818600","https://openalex.org/W2481855343","https://openalex.org/W2516785141","https://openalex.org/W2582743722","https://openalex.org/W2585025165","https://openalex.org/W2585905183","https://openalex.org/W2618381986","https://openalex.org/W2765099526","https://openalex.org/W2771976834","https://openalex.org/W2793100849","https://openalex.org/W2804025781","https://openalex.org/W2898128793","https://openalex.org/W2902980522","https://openalex.org/W2912446324","https://openalex.org/W2945182784","https://openalex.org/W2952481700","https://openalex.org/W2994055439","https://openalex.org/W3011535982","https://openalex.org/W3023699121","https://openalex.org/W3087195299","https://openalex.org/W3094605278","https://openalex.org/W3131055609","https://openalex.org/W3190920298","https://openalex.org/W4220699115","https://openalex.org/W4231500399","https://openalex.org/W4254687493","https://openalex.org/W4291746384","https://openalex.org/W4302761459","https://openalex.org/W4390732562","https://openalex.org/W4394666350","https://openalex.org/W4399568951","https://openalex.org/W4399584857","https://openalex.org/W4399585236","https://openalex.org/W4399640133","https://openalex.org/W4399651086","https://openalex.org/W4400056196","https://openalex.org/W4401374682","https://openalex.org/W4407945406","https://openalex.org/W4413055523","https://openalex.org/W4414934974","https://openalex.org/W4416248974","https://openalex.org/W7164842586","https://openalex.org/W7213534558","https://openalex.org/W7221477443"],"related_works":["https://openalex.org/W4416758125","https://openalex.org/W7033503068","https://openalex.org/W7221477443","https://openalex.org/W7213534558","https://openalex.org/W2041033056","https://openalex.org/W2902779160","https://openalex.org/W2232587503","https://openalex.org/W2192335871","https://openalex.org/W2600238195","https://openalex.org/W627106606"],"abstract_inverted_index":{"Black":[0],"pod":[1],"rot":[2],"caused":[3],"by":[4,24,87],"Phytophthora":[5],"megakarya":[6,85,253],"is":[7,22],"a":[8,78,140,194,281],"major":[9],"disease":[10,61],"impacting":[11],"cacao":[12,15,181],"(":[13],"Theobroma":[14],"L.)":[16],"production":[17],"in":[18,27,41,59,127,225,254],"West":[19],"Africa.":[20],"Resistance":[21],"influenced":[23],"genetic":[25],"variation":[26,145,218],"both":[28],"host":[29,48],"and":[30,81,92,151,186,219,277,287],"pathogen":[31,56,161,204,274],"populations.":[32],"While":[33],"genomic":[34,49,57,166,178,247,262],"prediction":[35,62,188],"approaches":[36],"have":[37],"been":[38],"widely":[39],"applied":[40],"plant":[42],"breeding,":[43],"most":[44,267],"studies":[45],"incorporate":[46],"only":[47],"information.":[50],"The":[51],"value":[52],"of":[53,119,132,143,153,189,197,249,268],"explicitly":[54],"modeling":[55],"relatedness":[58,167],"quantitative":[60],"remains":[63],"largely":[64],"unknown.":[65],"We":[66],"genotyped":[67,121],"947":[68],"clones":[69,97,122,149,182,192],"from":[70],"the":[71,226,245,269,278],"International":[72],"Cacao":[73,96],"Collection":[74],"at":[75],"CATIE":[76],"using":[77],"10K-SNP":[79],"panel":[80],"characterized":[82],"67":[83],"P.":[84,252],"isolates":[86,102,126,138,169],"sequencing":[88],"3,505":[89],"virulence-associated":[90],"genes":[91],"2,774":[93],"SNP":[94],"loci.":[95],"were":[98,111,201,220],"extensively":[99],"admixed,":[100],"while":[101],"formed":[103],"three":[104],"geographically":[105],"structured":[106,259],"subpopulations.":[107],"Mixed":[108],"linear":[109],"models":[110],"fitted":[112],"to":[113,251],"lesion":[114],"diameters":[115],"on":[116],"detached":[117],"pods":[118],"350":[120],"inoculated":[123],"with":[124,193,223,239],"58":[125],"30":[128],"bioassays,":[129],"covering":[130],"5%":[131],"possible":[133],"clone-by-isolate":[134,212],"combinations.":[135],"Differences":[136],"among":[137,148,168,180,264],"explained":[139],"larger":[141],"share":[142],"lesion-size":[144],"than":[146],"differences":[147],"(0.34":[150],"0.27":[152],"phenotypic":[154,217],"variance,":[155],"respectively).":[156],"After":[157],"accounting":[158],"for":[159,215,284],"broad":[160,273],"subpopulation":[162,275],"structure,":[163],"incorporating":[164,177],"within-subpopulation":[165],"improved":[170,183],"neither":[171],"model":[172,184],"fit":[173,185],"nor":[174],"prediction,":[175],"whereas":[176,211],"relationships":[179,263],"enabled":[187],"phenotypically":[190],"untested":[191],"predictive":[195],"ability":[196],"0.41.":[198],"Clone":[199],"rankings":[200],"stable":[202],"across":[203],"subpopulations":[205],"(genomic":[206],"correlation":[207],"0.86":[208],"\u00b1":[209],"0.06),":[210],"interactions":[213],"accounted":[214],"little":[216],"not":[221],"resolved":[222],"confidence":[224],"sparse":[227],"design.":[228],"An":[229],"exploratory":[230],"ancestry":[231,237],"analysis":[232],"associated":[233],"several":[234],"Upper":[235],"Amazon":[236],"components":[238],"smaller":[240],"predicted":[241],"lesions.":[242],"These":[243],"are":[244],"first":[246],"predictions":[248,279],"resistance":[250],"cacao.":[255],"In":[256],"this":[257],"strongly":[258],"host-pathogen":[260],"system,":[261],"hosts":[265],"carried":[266],"predictable":[270],"signal":[271],"beyond":[272],"effects,":[276],"provide":[280],"starting":[282],"point":[283],"prioritizing":[285],"screening":[286],"selection":[288],"efforts.":[289]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-11-06T00:00:00"}
