{"id":"https://openalex.org/W7225148123","doi":"https://doi.org/10.3390/sci8110336","title":"Moniliophthora roreri in Cacao: An Evidence-Calibrated Synthesis from Population Biology and Molecular Pathogenicity to Epidemiology and Adaptive Disease Management","display_name":"Moniliophthora roreri in Cacao: An Evidence-Calibrated Synthesis from Population Biology and Molecular Pathogenicity to Epidemiology and Adaptive Disease Management","publication_year":2026,"publication_date":"2026-11-02","ids":{"openalex":"https://openalex.org/W7225148123","doi":"https://doi.org/10.3390/sci8110336"},"language":"en","primary_location":{"id":"doi:10.3390/sci8110336","doi":"https://doi.org/10.3390/sci8110336","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sci8110336","pdf_url":null,"source":{"id":"https://openalex.org/S4210202795","display_name":"Sci","issn_l":"2413-4155","issn":["2413-4155"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.3390/sci8110336","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5061535574","display_name":"Yirlis Yadeth Pineda\u2010Rodr\u00edguez","orcid":"https://orcid.org/0009-0001-6196-1433","observed_orcids":["https://orcid.org/0009-0001-6196-1433"]},"institutions":[{"id":"https://openalex.org/I324290372","display_name":"Universidad de C\u00f3rdoba","ror":"https://ror.org/04nmbd607","country_code":"CO","type":"education","lineage":["https://openalex.org/I324290372"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Yirlis Yadeth Pineda-Rodr\u00edguez","raw_affiliation_strings":["Laboratorio de Biolog\u00eda Molecular Aplicada, Facultad de Ciencias Agr\u00edcolas, Universidad de C\u00f3rdoba, Monter\u00eda 230002, Colombia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Molecular Aplicada, Facultad de Ciencias Agr\u00edcolas, Universidad de C\u00f3rdoba, Monter\u00eda 230002, Colombia","institution_ids":["https://openalex.org/I324290372"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064952137","display_name":"Alfredo Jarma\u2010Orozco","orcid":"https://orcid.org/0000-0002-5821-2183","observed_orcids":["https://orcid.org/0000-0002-5821-2183"]},"institutions":[{"id":"https://openalex.org/I324290372","display_name":"Universidad de C\u00f3rdoba","ror":"https://ror.org/04nmbd607","country_code":"CO","type":"education","lineage":["https://openalex.org/I324290372"]}],"countries":["CO"],"is_corresponding":false,"raw_author_name":"Alfredo Jarma-Orozco","raw_affiliation_strings":["Laboratorio de Biolog\u00eda Molecular Aplicada, Facultad de Ciencias Agr\u00edcolas, Universidad de C\u00f3rdoba, Monter\u00eda 230002, Colombia"],"raw_orcid":"https://orcid.org/0000-0002-5821-2183","affiliations":[{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Molecular Aplicada, Facultad de Ciencias Agr\u00edcolas, Universidad de C\u00f3rdoba, Monter\u00eda 230002, Colombia","institution_ids":["https://openalex.org/I324290372"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025138462","display_name":"Luis Alfonso Rodr\u00edgu\u00e9z-P\u00e1ez","orcid":"https://orcid.org/0000-0002-1760-1852","observed_orcids":["https://orcid.org/0000-0002-1760-1852"]},"institutions":[{"id":"https://openalex.org/I324290372","display_name":"Universidad de C\u00f3rdoba","ror":"https://ror.org/04nmbd607","country_code":"CO","type":"education","lineage":["https://openalex.org/I324290372"]}],"countries":["CO"],"is_corresponding":true,"raw_author_name":"Luis Alfonso Rodr\u00edguez-P\u00e1ez","raw_affiliation_strings":["Laboratorio de Biolog\u00eda Molecular Aplicada, Facultad de Ciencias Agr\u00edcolas, Universidad de C\u00f3rdoba, Monter\u00eda 230002, Colombia"],"raw_orcid":"https://orcid.org/0000-0002-1760-1852","affiliations":[{"raw_affiliation_string":"Laboratorio de Biolog\u00eda Molecular Aplicada, Facultad de Ciencias Agr\u00edcolas, Universidad de C\u00f3rdoba, Monter\u00eda 230002, Colombia","institution_ids":["https://openalex.org/I324290372"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5025138462"],"corresponding_institution_ids":["https://openalex.org/I324290372"],"apc_list":{"value":1200,"currency":"CHF","value_usd":1448},"apc_paid":{"value":1200,"currency":"CHF","value_usd":1448},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.82362166,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"8","issue":"11","first_page":"336","last_page":"336"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.7943999767303467,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.7943999767303467,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.021900000050663948,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11900","display_name":"Fungal Plant Pathogen Control","score":0.012500000186264515,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/moniliophthora-roreri","display_name":"Moniliophthora roreri","score":0.996999979019165},{"id":"https://openalex.org/keywords/frosty-pod-rot","display_name":"frosty pod rot","score":0.996999979019165},{"id":"https://openalex.org/keywords/theobroma-cacao","display_name":"Theobroma cacao","score":0.953000009059906},{"id":"https://openalex.org/keywords/population-genomics","display_name":"population genomics","score":0.6399999856948853},{"id":"https://openalex.org/keywords/clonal-reproduction","display_name":"clonal reproduction","score":0.9129999876022339},{"id":"https://openalex.org/keywords/secreted-proteins","display_name":"secreted proteins","score":0.6690000295639038},{"id":"https://openalex.org/keywords/carbohydrate-active-enzymes","display_name":"carbohydrate-active enzymes","score":0.9800000190734863},{"id":"https://openalex.org/keywords/pathogen-epidemiology","display_name":"pathogen epidemiology","score":0.6880000233650208},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.7739999890327454},{"id":"https://openalex.org/keywords/pathogen-origin","display_name":"pathogen origin","score":0.4339999854564667},{"id":"https://openalex.org/keywords/dna-testing","display_name":"DNA testing","score":0.4300000071525574}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8371000289916992},{"id":"https://openalex.org/C2781368420","wikidata":"https://www.wikidata.org/wiki/Q803874","display_name":"Biosecurity","level":2,"score":0.7768999934196472},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5878000259399414},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5608999729156494},{"id":"https://openalex.org/C97669555","wikidata":"https://www.wikidata.org/wiki/Q4118435","display_name":"Molecular epidemiology","level":4,"score":0.49399998784065247},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.48910000920295715},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4375},{"id":"https://openalex.org/C180704567","wikidata":"https://www.wikidata.org/wiki/Q1098652","display_name":"Population biology","level":3,"score":0.43160000443458557},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4307999908924103},{"id":"https://openalex.org/C2992278830","wikidata":"https://www.wikidata.org/wiki/Q483921","display_name":"Adaptive evolution","level":3,"score":0.4293999969959259},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.40389999747276306},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.39739999175071716},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.38040000200271606},{"id":"https://openalex.org/C2779040068","wikidata":"https://www.wikidata.org/wiki/Q7229807","display_name":"Population genomics","level":5,"score":0.3573000133037567},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.35370001196861267},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.3528999984264374},{"id":"https://openalex.org/C107130276","wikidata":"https://www.wikidata.org/wiki/Q133805","display_name":"Epidemiology","level":2,"score":0.3416999876499176},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.3312000036239624},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.31470000743865967},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.30219998955726624},{"id":"https://openalex.org/C2982889124","wikidata":"https://www.wikidata.org/wiki/Q107439039","display_name":"Disease management","level":4,"score":0.3019999861717224},{"id":"https://openalex.org/C24527192","wikidata":"https://www.wikidata.org/wiki/Q17149729","display_name":"Human pathogen","level":3,"score":0.28110000491142273},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.2786000072956085},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.2768999934196472},{"id":"https://openalex.org/C93678976","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant disease resistance","level":3,"score":0.27000001072883606},{"id":"https://openalex.org/C64502627","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogenicity","level":2,"score":0.2621999979019165},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.2563999891281128},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.25540000200271606},{"id":"https://openalex.org/C172777353","wikidata":"https://www.wikidata.org/wiki/Q1374271","display_name":"Genetic variability","level":4,"score":0.25369998812675476}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.3390/sci8110336","doi":"https://doi.org/10.3390/sci8110336","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sci8110336","pdf_url":null,"source":{"id":"https://openalex.org/S4210202795","display_name":"Sci","issn_l":"2413-4155","issn":["2413-4155"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.3390/sci8110336","doi":"https://doi.org/10.3390/sci8110336","is_oa":true,"landing_page_url":"https://doi.org/10.3390/sci8110336","pdf_url":null,"source":{"id":"https://openalex.org/S4210202795","display_name":"Sci","issn_l":"2413-4155","issn":["2413-4155"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj"],"host_organization":"https://openalex.org/P4310310987","host_organization_name":"Multidisciplinary Digital Publishing Institute","host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Sci","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5365999937057495,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"},{"score":0.4043000042438507,"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":61,"referenced_works":["https://openalex.org/W1481832954","https://openalex.org/W1530997283","https://openalex.org/W1796517865","https://openalex.org/W1965334546","https://openalex.org/W1982110215","https://openalex.org/W1982599688","https://openalex.org/W1991402582","https://openalex.org/W1994382803","https://openalex.org/W1998019829","https://openalex.org/W2005781291","https://openalex.org/W2020297499","https://openalex.org/W2032844984","https://openalex.org/W2071395072","https://openalex.org/W2089258685","https://openalex.org/W2098045066","https://openalex.org/W2138285303","https://openalex.org/W2144986789","https://openalex.org/W2157667924","https://openalex.org/W2262805025","https://openalex.org/W2288750088","https://openalex.org/W2292518487","https://openalex.org/W2336425587","https://openalex.org/W2510032720","https://openalex.org/W2584878447","https://openalex.org/W2772125925","https://openalex.org/W2793100849","https://openalex.org/W2811178520","https://openalex.org/W2920361403","https://openalex.org/W2936635740","https://openalex.org/W2998355329","https://openalex.org/W3010908628","https://openalex.org/W3080715268","https://openalex.org/W3086675612","https://openalex.org/W3209918725","https://openalex.org/W3214320731","https://openalex.org/W4206736393","https://openalex.org/W4230188650","https://openalex.org/W4283025566","https://openalex.org/W4302742848","https://openalex.org/W4312226811","https://openalex.org/W4322736482","https://openalex.org/W4380681834","https://openalex.org/W4380989800","https://openalex.org/W4381309172","https://openalex.org/W4385069204","https://openalex.org/W4393071253","https://openalex.org/W4403943676","https://openalex.org/W4405804117","https://openalex.org/W4405990118","https://openalex.org/W4409277514","https://openalex.org/W4412424606","https://openalex.org/W4413043730","https://openalex.org/W4414480932","https://openalex.org/W4415786365","https://openalex.org/W7128509130","https://openalex.org/W7128685201","https://openalex.org/W7133133108","https://openalex.org/W7133320952","https://openalex.org/W7140128942","https://openalex.org/W7161271359","https://openalex.org/W7168178196"],"related_works":["https://openalex.org/W7222943188","https://openalex.org/W4283025566","https://openalex.org/W2887823877","https://openalex.org/W3204974335","https://openalex.org/W2582861159","https://openalex.org/W1445911703","https://openalex.org/W2558139966","https://openalex.org/W7120387779","https://openalex.org/W2568940804","https://openalex.org/W2053607622"],"abstract_inverted_index":{"Frosty":[0],"pod":[1],"rot":[2],"(FPR),":[3],"caused":[4],"by":[5],"the":[6,18,25,54,95],"basidiomycete":[7],"Moniliophthora":[8],"roreri,":[9],"remains":[10],"a":[11,21,81,86],"major":[12],"constraint":[13],"to":[14],"cacao":[15],"production":[16],"in":[17],"Neotropics":[19],"and":[20,48,56,73,91,104,108,133,138,141,145,154],"biosecurity":[22],"concern":[23],"where":[24],"pathogen":[26,101,128],"is":[27],"absent.":[28],"This":[29],"critical":[30],"narrative":[31],"review":[32],"appraises":[33],"69":[34],"sources":[35],"spanning":[36],"reproductive":[37],"biology,":[38],"infection-stage":[39],"transitions,":[40],"population":[41],"genomics,":[42],"molecular":[43,130],"pathogenicity,":[44],"diagnostics,":[45],"epidemiology,":[46],"resistance":[47,144],"management,":[49],"calibrating":[50],"recurrent":[51],"claims":[52],"against":[53],"directness":[55],"reproducibility":[57],"of":[58,97],"their":[59],"evidence.":[60],"The":[61],"evidence":[62],"supports":[63],"predominantly":[64],"clonal":[65],"reproduction,":[66],"marked":[67],"geographical":[68,84],"structure,":[69],"continued":[70],"genome":[71],"evolution":[72],"prolonged":[74],"hidden":[75],"colonisation.":[76],"It":[77],"does":[78],"not":[79],"support":[80],"uniquely":[82],"resolved":[83],"origin,":[85],"correspondence":[87],"between":[88],"genetic":[89],"structure":[90],"pathogenic":[92],"phenotype,":[93],"or":[94],"inference":[96],"epidemic":[98,136],"risk":[99],"from":[100],"DNA":[102],"alone,":[103],"extensive":[105],"candidate":[106],"secreted-protein":[107],"carbohydrate-active":[109],"enzyme":[110],"(CAZyme)":[111],"repertoires":[112],"remain":[113],"largely":[114],"without":[115],"causal":[116,125],"validation.":[117],"We":[118],"integrate":[119],"these":[120],"domains":[121],"into":[122],"an":[123],"evidence-calibrated":[124],"framework":[126],"linking":[127],"diversity,":[129],"processes,":[131],"infection":[132],"transmission":[134],"traits,":[135],"behaviour":[137],"adaptive":[139],"management":[140],"identify":[142],"epidemiological":[143],"dynamic":[146],"sentinel-isolate":[147],"panels":[148],"as":[149],"priorities":[150],"for":[151],"advancing":[152],"predictive":[153],"durable":[155],"FPR":[156],"management.":[157]},"counts_by_year":[],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2026-11-04T00:00:00"}
