{"id":"https://openalex.org/W7225107635","doi":"https://doi.org/10.5281/zenodo.23880243","title":"Hidden in plain site: Most metagenomic vanT calls are not vancomycin resistance genes","display_name":"Hidden in plain site: Most metagenomic vanT calls are not vancomycin resistance genes","publication_year":2026,"publication_date":"2026-11-02","ids":{"openalex":"https://openalex.org/W7225107635","doi":"https://doi.org/10.5281/zenodo.23880243"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.23880243","doi":"https://doi.org/10.5281/zenodo.23880243","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23880243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"volume":null,"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.23880243","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058940068","display_name":"Roland Wirth","orcid":"https://orcid.org/0000-0002-2383-2323","observed_orcids":["https://orcid.org/0000-0002-2383-2323"]},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Wirth, Roland","raw_affiliation_strings":["HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont"],"raw_orcid":"https://orcid.org/0000-0002-2383-2323","affiliations":[{"raw_affiliation_string":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","institution_ids":["https://openalex.org/I2800351701"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5069724554","display_name":"Prateek Shetty","orcid":"https://orcid.org/0000-0002-8520-690X","observed_orcids":["https://orcid.org/0000-0002-8520-690X"]},"institutions":[{"id":"https://openalex.org/I2800351701","display_name":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","ror":"https://ror.org/016gb1631","country_code":"HU","type":"facility","lineage":["https://openalex.org/I2800351701","https://openalex.org/I7597260"]}],"countries":["HU"],"is_corresponding":false,"raw_author_name":"Shetty, Prateek","raw_affiliation_strings":["HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont"],"raw_orcid":"https://orcid.org/0000-0002-8520-690X","affiliations":[{"raw_affiliation_string":"HUN-REN Szegedi Biol\u00f3giai Kutat\u00f3k\u00f6zpont","institution_ids":["https://openalex.org/I2800351701"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I2800351701"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.75694855,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.40549999475479126,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10147","display_name":"Antibiotic Resistance in Bacteria","score":0.40549999475479126,"subfield":{"id":"https://openalex.org/subfields/1313","display_name":"Molecular Medicine"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10195","display_name":"Antimicrobial Resistance in Staphylococcus","score":0.2563000023365021,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.1388999968767166,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vancomycin-resistance-genes","display_name":"vancomycin resistance genes","score":0.9179999828338623},{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.7200000286102295},{"id":"https://openalex.org/keywords/antibiotic-resistance-genes","display_name":"antibiotic resistance genes","score":0.6269999742507935},{"id":"https://openalex.org/keywords/false-positive-results","display_name":"false positives","score":0.42100000381469727},{"id":"https://openalex.org/keywords/metagenome-assembled-genomes","display_name":"metagenome-assembled genomes","score":0.6650000214576721}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8155999779701233},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6085000038146973},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.552299976348877},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5067999958992004},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.48840001225471497},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.3424000144004822},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31529998779296875},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.2770000100135803},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.273499995470047},{"id":"https://openalex.org/C105565629","wikidata":"https://www.wikidata.org/wiki/Q1248292","display_name":"Gene prediction","level":4,"score":0.27160000801086426},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.26260000467300415}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.23880243","doi":"https://doi.org/10.5281/zenodo.23880243","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23880243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.5281/zenodo.23880244","doi":"https://doi.org/10.5281/zenodo.23880244","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23880244","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.5281/zenodo.23880243","doi":"https://doi.org/10.5281/zenodo.23880243","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23880243","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7223306863","https://openalex.org/W2569016307","https://openalex.org/W7131932561","https://openalex.org/W4404579374","https://openalex.org/W4389031744","https://openalex.org/W6930347310","https://openalex.org/W2940024180","https://openalex.org/W6893123064","https://openalex.org/W3214863941","https://openalex.org/W7058703893"],"abstract_inverted_index":{"Here":[0],"are":[1],"the":[2,8],"larger":[3],"input":[4],"files":[5],"required":[6],"for":[7],"analysis.":[9]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2026-11-03T00:00:00"}
