{"id":"https://openalex.org/W7224849507","doi":"https://doi.org/10.64898/2026.10.29.762866","title":"Mobile genetic elements accompany the emergence of clonal crop lineages from weed-associated populations of Xanthomonas campestris","display_name":"Mobile genetic elements accompany the emergence of clonal crop lineages from weed-associated populations of Xanthomonas campestris","publication_year":2026,"publication_date":"2026-10-30","ids":{"openalex":"https://openalex.org/W7224849507","doi":"https://doi.org/10.64898/2026.10.29.762866"},"language":"en","primary_location":{"id":"doi:10.64898/2026.10.29.762866","doi":"https://doi.org/10.64898/2026.10.29.762866","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.29.762866","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.64898/2026.10.29.762866","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011767275","display_name":"Cole R. Sawyer","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I4389425366","display_name":"Oak Ridge Institute for Science and Education","ror":"https://ror.org/040vxhp34","country_code":"US","type":"education","lineage":["https://openalex.org/I1281378812","https://openalex.org/I1330989302","https://openalex.org/I4389425366"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cole Sawyer","raw_affiliation_strings":["Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA","Oak Ridge Institute for Science and Education, ARS Research Participation Program, Oak Ridge, TN 37831, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"raw_affiliation_string":"Oak Ridge Institute for Science and Education, ARS Research Participation Program, Oak Ridge, TN 37831, USA","institution_ids":["https://openalex.org/I4389425366"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026516817","display_name":"Zo\u00eb E. Dubrow","orcid":"https://orcid.org/0000-0002-2099-3973","observed_orcids":["https://orcid.org/0000-0002-2099-3973"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zo\u00eb E. Dubrow","raw_affiliation_strings":["Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047827971","display_name":"Sara C. D. Carpenter","orcid":"https://orcid.org/0000-0002-3485-4042","observed_orcids":["https://orcid.org/0000-0002-3485-4042"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sara C.D. Carpenter","raw_affiliation_strings":["Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5160211882","display_name":"Miles Buddy","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1313142568","display_name":"Florida Museum of Natural History","ror":"https://ror.org/02pjdv450","country_code":"US","type":"archive","lineage":["https://openalex.org/I1313142568","https://openalex.org/I33213144"]},{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]},{"id":"https://openalex.org/I4405265380","display_name":"Institute of Food and Agricultural Sciences","ror":"https://ror.org/04mm87038","country_code":"US","type":"facility","lineage":["https://openalex.org/I33213144","https://openalex.org/I4405265380"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Miles Buddy","raw_affiliation_strings":["Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA","School of Natural Resources and Environment, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I1313142568","https://openalex.org/I33213144"]},{"raw_affiliation_string":"School of Natural Resources and Environment, Institute of Food and Agricultural Sciences, University of Florida, Gainesville, FL 32611, USA","institution_ids":["https://openalex.org/I33213144","https://openalex.org/I4405265380"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063130989","display_name":"Paul C. Owen-Smith","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paul C. Owen-Smith","raw_affiliation_strings":["Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015882616","display_name":"Adam Joseph Bogdanove","orcid":"https://orcid.org/0000-0003-1683-4117","observed_orcids":["https://orcid.org/0000-0003-1683-4117"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam J. Bogdanove","raw_affiliation_strings":["Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca NY 14853, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell University, Ithaca NY 14853, USA","institution_ids":["https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072188298","display_name":"Christine D. Smart","orcid":"https://orcid.org/0000-0003-4162-9502","observed_orcids":["https://orcid.org/0000-0003-4162-9502"]},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4392738320","display_name":"Cornell University Agricultural Experiment Station","ror":"https://ror.org/012qsrr25","country_code":"US","type":"facility","lineage":["https://openalex.org/I205783295","https://openalex.org/I4392738320"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christine D. Smart","raw_affiliation_strings":["Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell AgriTech, Cornell University, Geneva, NY 14456, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Plant Pathology & Plant-Microbe Biology Section, School of Integrative Plant Science, Cornell AgriTech, Cornell University, Geneva, NY 14456, USA","institution_ids":["https://openalex.org/I205783295","https://openalex.org/I4392738320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037998018","display_name":"Michael R. Fulcher","orcid":"https://orcid.org/0000-0001-8870-2901","observed_orcids":["https://orcid.org/0000-0001-8870-2901"]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael R. Fulcher","raw_affiliation_strings":["Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5159162661","display_name":"Matthew Tancos","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matthew A. Tancos","raw_affiliation_strings":["Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD 21702, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5159162661"],"corresponding_institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/xanthomonas-campestris","display_name":"Xanthomonas campestris","score":1.0},{"id":"https://openalex.org/keywords/black-rot","display_name":"black rot","score":0.8629999756813049},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"mobile genetic elements","score":0.7120000123977661},{"id":"https://openalex.org/keywords/integrative-and-conjugative-elements","display_name":"integrative and conjugative elements","score":0.8240000009536743},{"id":"https://openalex.org/keywords/plasmids","display_name":"plasmids","score":0.9290000200271606},{"id":"https://openalex.org/keywords/clonal-lineages","display_name":"clonal lineages","score":0.6399999856948853},{"id":"https://openalex.org/keywords/alliaria-petiolata","display_name":"Alliaria petiolata","score":0.921999990940094},{"id":"https://openalex.org/keywords/host-range-evolution","display_name":"host range evolution","score":0.5849999785423279},{"id":"https://openalex.org/keywords/pathogen-evolution","display_name":"pathogen evolution","score":0.5080000162124634},{"id":"https://openalex.org/keywords/pan-genome","display_name":"pan-genome","score":0.718999981880188},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"phylogenomics","score":0.9369999766349792},{"id":"https://openalex.org/keywords/cruciferous-vegetables","display_name":"cruciferous vegetables","score":0.5989999771118164},{"id":"https://openalex.org/keywords/invasive-weeds","display_name":"invasive weeds","score":0.5569999814033508},{"id":"https://openalex.org/keywords/biosecurity","display_name":"biosecurity","score":0.6439999938011169}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9387999773025513},{"id":"https://openalex.org/C132533263","wikidata":"https://www.wikidata.org/wiki/Q2347362","display_name":"Mobile genetic elements","level":4,"score":0.6312999725341797},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6258000135421753},{"id":"https://openalex.org/C2781368420","wikidata":"https://www.wikidata.org/wiki/Q803874","display_name":"Biosecurity","level":2,"score":0.5073999762535095},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.4986000061035156},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4871000051498413},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.48190000653266907},{"id":"https://openalex.org/C137580998","wikidata":"https://www.wikidata.org/wiki/Q235352","display_name":"Crop","level":2,"score":0.41940000653266907},{"id":"https://openalex.org/C2781247595","wikidata":"https://www.wikidata.org/wiki/Q8043055","display_name":"Xanthomonas campestris pv. campestris","level":4,"score":0.41920000314712524},{"id":"https://openalex.org/C92938381","wikidata":"https://www.wikidata.org/wiki/Q83185","display_name":"Horizontal gene transfer","level":4,"score":0.37779998779296875},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.3538999855518341},{"id":"https://openalex.org/C24527192","wikidata":"https://www.wikidata.org/wiki/Q17149729","display_name":"Human pathogen","level":3,"score":0.3301999866962433},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.32030001282691956},{"id":"https://openalex.org/C2775891814","wikidata":"https://www.wikidata.org/wiki/Q101879","display_name":"Weed","level":2,"score":0.3190999925136566},{"id":"https://openalex.org/C2776914050","wikidata":"https://www.wikidata.org/wiki/Q19597524","display_name":"Host adaptation","level":4,"score":0.2992999851703644},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.29750001430511475},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2782999873161316},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.27639999985694885},{"id":"https://openalex.org/C2780679087","wikidata":"https://www.wikidata.org/wiki/Q3753551","display_name":"Xanthomonas campestris","level":3,"score":0.2750000059604645},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.26409998536109924},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.2533999979496002}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.10.29.762866","doi":"https://doi.org/10.64898/2026.10.29.762866","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.29.762866","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.10.29.762866","doi":"https://doi.org/10.64898/2026.10.29.762866","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.29.762866","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.875,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":70,"referenced_works":["https://openalex.org/W1730105450","https://openalex.org/W1988807068","https://openalex.org/W1994449684","https://openalex.org/W1994812157","https://openalex.org/W2003948830","https://openalex.org/W2014538668","https://openalex.org/W2020325200","https://openalex.org/W2034767233","https://openalex.org/W2041282815","https://openalex.org/W2059416035","https://openalex.org/W2063691150","https://openalex.org/W2067464792","https://openalex.org/W2083246302","https://openalex.org/W2102066302","https://openalex.org/W2107772251","https://openalex.org/W2114498474","https://openalex.org/W2115888213","https://openalex.org/W2120441014","https://openalex.org/W2123571266","https://openalex.org/W2125022933","https://openalex.org/W2131705791","https://openalex.org/W2136534457","https://openalex.org/W2153947402","https://openalex.org/W2160378127","https://openalex.org/W2168745915","https://openalex.org/W2189113033","https://openalex.org/W2282413424","https://openalex.org/W2324880212","https://openalex.org/W2381809271","https://openalex.org/W2511550143","https://openalex.org/W2762507330","https://openalex.org/W2789843538","https://openalex.org/W2792580475","https://openalex.org/W2950753995","https://openalex.org/W2951525638","https://openalex.org/W2997597259","https://openalex.org/W3005235420","https://openalex.org/W3012393121","https://openalex.org/W3023722810","https://openalex.org/W3033530531","https://openalex.org/W3119267289","https://openalex.org/W3148713816","https://openalex.org/W3176415342","https://openalex.org/W3191888303","https://openalex.org/W3209528471","https://openalex.org/W4200164102","https://openalex.org/W4200564640","https://openalex.org/W4206618511","https://openalex.org/W4212846311","https://openalex.org/W4213130506","https://openalex.org/W4221049496","https://openalex.org/W4229458686","https://openalex.org/W4282922867","https://openalex.org/W4360860759","https://openalex.org/W4386923826","https://openalex.org/W4387866057","https://openalex.org/W4388140405","https://openalex.org/W4388412041","https://openalex.org/W4390718191","https://openalex.org/W4391807437","https://openalex.org/W4393995158","https://openalex.org/W4400132918","https://openalex.org/W4404649747","https://openalex.org/W4407320176","https://openalex.org/W4407891450","https://openalex.org/W4412888263","https://openalex.org/W4413038869","https://openalex.org/W7127940870","https://openalex.org/W7162679912","https://openalex.org/W7172325903"],"related_works":["https://openalex.org/W2125022933","https://openalex.org/W4229458686","https://openalex.org/W4390718191","https://openalex.org/W2034767233","https://openalex.org/W2758823468","https://openalex.org/W7132995286","https://openalex.org/W7100208111","https://openalex.org/W7132636249","https://openalex.org/W4212846311","https://openalex.org/W3159081516"],"abstract_inverted_index":{"ABSTRACT":[0],"Xanthomonas":[1,251],"campestris":[2,48,252],"is":[3,13,154],"a":[4,217],"destructive":[5],"pathogen":[6,177,195,206,240,310,333],"of":[7,33,46,100,109,188,250,284,317,342],"cruciferous":[8],"vegetables":[9],"and":[10,12,30,43,69,116,119,127,159,163,179,197,208,277,294,312,338],"ornamentals":[11],"frequently":[14],"isolated":[15,55],"from":[16,56,67,258],"related":[17],"weed":[18],"species":[19],"growing":[20],"near":[21],"agricultural":[22,191,233,329],"land.":[23],"However,":[24],"the":[25,186,340],"evolutionary":[26],"relationships,":[27],"genomic":[28],"features,":[29],"biosecurity":[31,336],"significance":[32],"weed-associated":[34,144],"strains":[35,54,66,76,91,257,263,273],"remain":[36],"poorly":[37],"understood.":[38],"Here,":[39],"we":[40],"integrate":[41],"phylogenomic":[42],"pangenomic":[44,201],"analyses":[45],"X.":[47],",":[49,253],"including":[50,113,254],"nine":[51,255],"newly":[52],"sequenced":[53,256],"invasive":[57,169,259],"garlic":[58,260],"mustard":[59],"(":[60],"Alliaria":[61],"petiolata":[62],"),":[63],"to":[64,193,243,266,320],"compare":[65],"cultivated":[68],"non-cultivated":[70],"hosts":[71,173],"across":[72],"multiple":[73,106],"pathovars.":[74],"Weed-isolated":[75,262],"predominantly":[77,264],"clustered":[78],"within":[79],"basal,":[80],"genetically":[81,267],"diverse":[82,143,302],"lineages":[83,103,158,280],"associated":[84,124,150,291],"with":[85,105,125,151,292,335],"broad":[86],"host":[87,128,210,295],"ranges,":[88],"whereas":[89,271],"crop-isolated":[90,272],"were":[92,133,274],"concentrated":[93],"in":[94,135,142,161,232,301],"host-associated":[95],"clonal":[96,136],"lineages.":[97],"The":[98],"emergence":[99],"specialized":[101,276],"crop-associated":[102,137,205],"coincided":[104],"inferred":[107],"acquisitions":[108],"large":[110,285],"mobile":[111,286],"elements,":[112],"integrative":[114],"conjugative":[115],"mobilizable":[117],"elements":[118,132,288,298],"plasmids":[120],"carrying":[121,289],"genes":[122,290],"previously":[123],"pathogenicity":[126,293],"range.":[129,296],"Although":[130],"these":[131],"enriched":[134],"lineages,":[138,270],"they":[139,237],"also":[140,203,299],"occurred":[141,300],"strains,":[145,304],"indicating":[146],"that":[147,174,306,326],"genetic":[148,183,287],"material":[149],"crop":[152,244,321],"infection":[153],"distributed":[155],"among":[156],"divergent":[157],"persists":[160],"wild":[162],"weedy":[164],"systems.":[165],"These":[166,297],"findings":[167,324],"identify":[168],"weeds":[170,307],"as":[171],"ancillary":[172],"may":[175,308],"harbor":[176,239,309],"diversity":[178,241,311],"provide":[180,313],"opportunities":[181,314],"for":[182,213,219,315],"exchange,":[184],"underscoring":[185],"importance":[187],"surveillance":[189,327],"beyond":[190,328],"fields":[192,330],"monitor":[194],"diversification":[196,334],"emerging":[198],"threats.":[199],"Our":[200,323],"analysis":[202],"identified":[204],"factors":[207],"putative":[209],"resistance":[211],"targets":[212],"future":[214],"investigation,":[215],"providing":[216],"foundation":[218],"developing":[220],"critically":[221],"needed":[222],"black":[223],"rot-resistant":[224],"cultivars.":[225],"SIGNIFICANCE":[226],"Weedy":[227],"plants":[228],"are":[229],"often":[230,275],"overlooked":[231],"disease":[234],"surveillance,":[235],"yet":[236],"can":[238,331],"relevant":[242,319],"health.":[245],"We":[246],"analyzed":[247],"576":[248],"genomes":[249],"mustard.":[261],"belonged":[265],"diverse,":[268],"broad-host-range":[269],"clonal.":[278],"Crop-associated":[279],"showed":[281],"repeated":[282],"acquisition":[283],"weed-isolated":[303],"suggesting":[305],"exchange":[316],"traits":[318],"infection.":[322],"indicate":[325],"reveal":[332],"implications":[337],"inform":[339],"development":[341],"disease-resistant":[343],"crops.":[344]},"counts_by_year":[],"updated_date":"2026-11-05T12:25:35.769452","created_date":"2026-10-31T00:00:00"}