{"id":"https://openalex.org/W7224328701","doi":"https://doi.org/10.18805/ijar.b-5955","title":"Whole-genome Characterization of Genetic Diversity, Linkage Disequilibrium and Effective Population Size in Four Indian Goat Breeds from Diverse Agroecological Landscapes","display_name":"Whole-genome Characterization of Genetic Diversity, Linkage Disequilibrium and Effective Population Size in Four Indian Goat Breeds from Diverse Agroecological Landscapes","publication_year":2026,"publication_date":"2026-10-29","ids":{"openalex":"https://openalex.org/W7224328701","doi":"https://doi.org/10.18805/ijar.b-5955"},"language":"en","primary_location":{"id":"doi:10.18805/ijar.b-5955","doi":"https://doi.org/10.18805/ijar.b-5955","is_oa":true,"landing_page_url":"https://doi.org/10.18805/ijar.b-5955","pdf_url":null,"source":{"id":"https://openalex.org/S86329351","display_name":"Indian Journal of Animal Research","issn_l":"0367-6722","issn":["0367-6722","0976-0555"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4323835540","host_organization_name":"Agricultural Research Communication Centre","host_organization_lineage":["https://openalex.org/P4323835540"],"host_organization_lineage_names":["Agricultural Research Communication Centre"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Indian Journal of Animal Research","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.18805/ijar.b-5955","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5157455758","display_name":"Mukund Ramesh Kachave","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mukund Ramesh Kachave","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000838206","display_name":"Reena Arora","orcid":"https://orcid.org/0000-0001-8740-7150","observed_orcids":["https://orcid.org/0000-0001-8740-7150"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Reena Arora","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5147560688","display_name":"Asad Khan","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Asad Khan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5160079798","display_name":"Pravin Babubhai Purohit","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pravin Babubhai Purohit","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003674763","display_name":"Rajesh Kumar Bochlya","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rajesh Kumar Bochlya","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009910395","display_name":"Sonika Ahlawat","orcid":"https://orcid.org/0000-0002-4302-2969","observed_orcids":["https://orcid.org/0000-0002-4302-2969"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sonika Ahlawat","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5160098259","display_name":"Raja K.N.","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Raja K.N.","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.84890057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":"Of","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.00019999999494757503,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.9559999704360962},{"id":"https://openalex.org/keywords/linkage-disequilibrium","display_name":"linkage disequilibrium","score":0.9959999918937683},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"effective population size","score":0.9929999709129333},{"id":"https://openalex.org/keywords/inbreeding","display_name":"inbreeding","score":0.6779999732971191},{"id":"https://openalex.org/keywords/demographic-history","display_name":"demographic history","score":0.6610000133514404},{"id":"https://openalex.org/keywords/agroecological-adaptation","display_name":"agroecological adaptation","score":0.6610000133514404},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.5509999990463257}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7095999717712402},{"id":"https://openalex.org/C35605836","wikidata":"https://www.wikidata.org/wiki/Q2064311","display_name":"Linkage disequilibrium","level":5,"score":0.7069000005722046},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.6177999973297119},{"id":"https://openalex.org/C2777782036","wikidata":"https://www.wikidata.org/wiki/Q38978","display_name":"Inbreeding","level":3,"score":0.6079999804496765},{"id":"https://openalex.org/C3641667","wikidata":"https://www.wikidata.org/wiki/Q1295959","display_name":"Effective population size","level":4,"score":0.5953999757766724},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.4616999924182892},{"id":"https://openalex.org/C517289559","wikidata":"https://www.wikidata.org/wiki/Q10297573","display_name":"Demographic history","level":4,"score":0.43720000982284546},{"id":"https://openalex.org/C169733012","wikidata":"https://www.wikidata.org/wiki/Q1613416","display_name":"Population size","level":3,"score":0.4357999861240387},{"id":"https://openalex.org/C105076106","wikidata":"https://www.wikidata.org/wiki/Q815715","display_name":"Population bottleneck","level":5,"score":0.4327000081539154},{"id":"https://openalex.org/C156663261","wikidata":"https://www.wikidata.org/wiki/Q396338","display_name":"Agroecology","level":3,"score":0.35530000925064087},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3458000123500824},{"id":"https://openalex.org/C55958113","wikidata":"https://www.wikidata.org/wiki/Q169480","display_name":"Indigenous","level":2,"score":0.3440999984741211},{"id":"https://openalex.org/C143589142","wikidata":"https://www.wikidata.org/wiki/Q2617554","display_name":"Loss of heterozygosity","level":4,"score":0.3345000147819519},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.3246999979019165},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.3165999948978424},{"id":"https://openalex.org/C2776116246","wikidata":"https://www.wikidata.org/wiki/Q21067469","display_name":"Runs of Homozygosity","level":5,"score":0.2994999885559082},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2971000075340271},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.29330000281333923},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.2842000126838684},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.2750000059604645},{"id":"https://openalex.org/C195054827","wikidata":"https://www.wikidata.org/wiki/Q504568","display_name":"Founder effect","level":5,"score":0.27480000257492065},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.2615000009536743},{"id":"https://openalex.org/C2778146401","wikidata":"https://www.wikidata.org/wiki/Q10916362","display_name":"Disequilibrium","level":2,"score":0.260699987411499},{"id":"https://openalex.org/C61320498","wikidata":"https://www.wikidata.org/wiki/Q265193","display_name":"Microsatellite","level":4,"score":0.2596000134944916},{"id":"https://openalex.org/C2991667299","wikidata":"https://www.wikidata.org/wiki/Q2934","display_name":"Capra hircus","level":2,"score":0.2526000142097473}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.18805/ijar.b-5955","doi":"https://doi.org/10.18805/ijar.b-5955","is_oa":true,"landing_page_url":"https://doi.org/10.18805/ijar.b-5955","pdf_url":null,"source":{"id":"https://openalex.org/S86329351","display_name":"Indian Journal of Animal Research","issn_l":"0367-6722","issn":["0367-6722","0976-0555"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4323835540","host_organization_name":"Agricultural Research Communication Centre","host_organization_lineage":["https://openalex.org/P4323835540"],"host_organization_lineage_names":["Agricultural Research Communication Centre"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Indian Journal of Animal Research","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.18805/ijar.b-5955","doi":"https://doi.org/10.18805/ijar.b-5955","is_oa":true,"landing_page_url":"https://doi.org/10.18805/ijar.b-5955","pdf_url":null,"source":{"id":"https://openalex.org/S86329351","display_name":"Indian Journal of Animal Research","issn_l":"0367-6722","issn":["0367-6722","0976-0555"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","jufo-1","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4323835540","host_organization_name":"Agricultural Research Communication Centre","host_organization_lineage":["https://openalex.org/P4323835540"],"host_organization_lineage_names":["Agricultural Research Communication Centre"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Indian Journal of Animal Research","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.875}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7117100420","https://openalex.org/W4383617401","https://openalex.org/W7163898784","https://openalex.org/W4391824691","https://openalex.org/W3123488177","https://openalex.org/W3036010266","https://openalex.org/W3124886791","https://openalex.org/W4316035234","https://openalex.org/W3046503529","https://openalex.org/W7220409554"],"abstract_inverted_index":{"Background:":[0],"Indian":[1,164],"goats":[2],"represent":[3],"valuable":[4,153],"genetic":[5,27,160],"resources":[6],"adapted":[7],"to":[8,66,136],"diverse":[9],"agro-climatic":[10],"conditions,":[11],"yet":[12],"their":[13],"genome-wide":[14],"diversity":[15,148],"and":[16,32,43,77,94,100,149,158],"demographic":[17,150],"history":[18],"remain":[19],"inadequately":[20],"characterized.":[21],"This":[22],"study":[23],"assessed":[24],"genomic":[25,147],"variation,":[26],"diversity,":[28],"linkage":[29],"disequilibrium":[30],"(LD)":[31],"historical":[33,135],"effective":[34],"population":[35],"size":[36],"(Ne)":[37],"in":[38],"Assam":[39],"Hill,":[40],"Bhakarwali,":[41],"Nandidurga":[42],"Kutchi":[44,121],"goats.":[45,165],"Methods:":[46],"Whole-genome":[47],"sequencing":[48],"of":[49,61,162],"40":[50],"unrelated":[51],"animals":[52],"(10":[53],"from":[54,98,107,134],"each":[55],"breed)":[56],"generated":[57],"an":[58],"average":[59],"coverage":[60],"9.14X.":[62],"Reads":[63],"were":[64,90],"aligned":[65],"the":[67,143],"Capra":[68],"hircus":[69],"ARS1.2":[70],"reference":[71],"genome,":[72],"followed":[73],"by":[74],"variant":[75],"calling":[76],"quality":[78],"filtering,":[79],"yielding":[80],"22.22-28.20":[81],"million":[82],"processed":[83],"variants":[84],"across":[85,139],"breeds.":[86,141],"Result:":[87],"Ts/Tv":[88],"ratios":[89],"consistent":[91],"(2.3141-2.3175).":[92],"Observed":[93],"expected":[95],"heterozygosity":[96],"ranged":[97,106],"0.2534-0.2746":[99],"0.2581-0.2763,":[101],"respectively,":[102],"while":[103],"mean":[104],"MAF":[105],"0.1758-0.1948.":[108],"Genomic":[109],"inbreeding":[110],"was":[111],"low":[112],"(-0.0159-0.0323).":[113],"LD":[114,125],"declined":[115],"progressively":[116],"with":[117,120],"physical":[118],"distance,":[119],"showing":[122],"relatively":[123],"greater":[124],"persistence.":[126],"LD-based":[127],"Ne":[128],"estimates":[129],"revealed":[130],"a":[131],"substantial":[132],"decline":[133],"recent":[137],"generations":[138],"all":[140],"Overall,":[142],"breeds":[144],"exhibited":[145],"distinct":[146],"patterns,":[151],"providing":[152],"insights":[154],"for":[155],"breed-specific":[156],"conservation":[157],"sustainable":[159],"utilization":[161],"indigenous":[163]},"counts_by_year":[],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2026-10-30T00:00:00"}