{"id":"https://openalex.org/W7224095960","doi":"https://doi.org/10.21315/tlsr2026.37.3.3","title":"Phenotypic Variability of Liberoid Coffee (Coffea liberica and C. dewevrei) Across Sumatera and Javanese Landscapes: Foundational Insights for Coffee-based Agroforestry","display_name":"Phenotypic Variability of Liberoid Coffee (Coffea liberica and C. dewevrei) Across Sumatera and Javanese Landscapes: Foundational Insights for Coffee-based Agroforestry","publication_year":2026,"publication_date":"2026-10-15","ids":{"openalex":"https://openalex.org/W7224095960","doi":"https://doi.org/10.21315/tlsr2026.37.3.3","pmid":"https://pubmed.ncbi.nlm.nih.gov/42997713","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13743191"},"language":"en","primary_location":{"id":"doi:10.21315/tlsr2026.37.3.3","doi":"https://doi.org/10.21315/tlsr2026.37.3.3","is_oa":true,"landing_page_url":"https://doi.org/10.21315/tlsr2026.37.3.3","pdf_url":null,"source":{"id":"https://openalex.org/S2764848098","display_name":"Tropical Life Sciences Research","issn_l":"1985-3718","issn":["1985-3718","2180-4249"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310321392","host_organization_name":"Penerbit Universiti Sains Malaysia","host_organization_lineage":["https://openalex.org/P4310321392"],"host_organization_lineage_names":["Penerbit Universiti Sains Malaysia"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Tropical Life Sciences Research","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.21315/tlsr2026.37.3.3","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014137490","display_name":"Danniary Ismail Faronny","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Danniary Ismail Faronny","raw_affiliation_strings":["Environment Sciences Doctoral Program, Postgraduate School, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145, Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Environment Sciences Doctoral Program, Postgraduate School, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145, Indonesia","institution_ids":["https://openalex.org/I177055848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003719450","display_name":"Melati Julia Rahma","orcid":"https://orcid.org/0000-0002-7832-7893","observed_orcids":["https://orcid.org/0000-0002-7832-7893"]},"institutions":[{"id":"https://openalex.org/I102893293","display_name":"State University of Malang","ror":"https://ror.org/00ypgyy34","country_code":"ID","type":"education","lineage":["https://openalex.org/I102893293"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Melati Julia Rahma","raw_affiliation_strings":["Department of Geography, Faculty of Social Sciences, State University of Malang, Jalan Semarang 5, Malang 65145, East Java, Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geography, Faculty of Social Sciences, State University of Malang, Jalan Semarang 5, Malang 65145, East Java, Indonesia","institution_ids":["https://openalex.org/I102893293"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116532490","display_name":"Ayudha Pradhana","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Ayudha Pradhana","raw_affiliation_strings":["Department of Business Administration, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145, Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Business Administration, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145, Indonesia","institution_ids":["https://openalex.org/I177055848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029095453","display_name":"Agus Nurrofik","orcid":"https://orcid.org/0000-0002-1166-0667","observed_orcids":["https://orcid.org/0000-0002-1166-0667"]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Agus Nurrofik","raw_affiliation_strings":["Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia","institution_ids":["https://openalex.org/I177055848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056414712","display_name":"Wenny Bekti Sunarharum","orcid":"https://orcid.org/0000-0002-0195-3474","observed_orcids":["https://orcid.org/0000-0002-0195-3474"]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Wenny Bekti Sunarharum","raw_affiliation_strings":["Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia","institution_ids":["https://openalex.org/I177055848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090054506","display_name":"Luchman Hakim","orcid":"https://orcid.org/0000-0002-6059-3341","observed_orcids":["https://orcid.org/0000-0002-6059-3341","https://orcid.org/0000-0002-6622-3325"]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Luchman Hakim","raw_affiliation_strings":["Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia","institution_ids":["https://openalex.org/I177055848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5160062434","display_name":"Soemarno","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Soemarno","raw_affiliation_strings":["Department of Soil Sciences, Faculty of Agriculture, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Soil Sciences, Faculty of Agriculture, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia","institution_ids":["https://openalex.org/I177055848"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021430616","display_name":"Elexson Nillian","orcid":"https://orcid.org/0000-0002-5460-2395","observed_orcids":["https://orcid.org/0000-0002-5460-2395","https://orcid.org/0009-0009-5704-9423"]},"institutions":[{"id":"https://openalex.org/I41461413","display_name":"Universiti Malaysia Sarawak","ror":"https://ror.org/05b307002","country_code":"MY","type":"education","lineage":["https://openalex.org/I41461413"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Elexson Nillian","raw_affiliation_strings":["Faculty of Resource Science and Technology, University Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Resource Science and Technology, University Malaysia Sarawak, 94300 Kota Samarahan, Sarawak, Malaysia","institution_ids":["https://openalex.org/I41461413"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064109499","display_name":"Tunjung Mahatmanto","orcid":"https://orcid.org/0000-0002-3708-045X","observed_orcids":["https://orcid.org/0000-0002-3708-045X"]},"institutions":[{"id":"https://openalex.org/I177055848","display_name":"University of Brawijaya","ror":"https://ror.org/01wk3d929","country_code":"ID","type":"education","lineage":["https://openalex.org/I177055848"]}],"countries":["ID"],"is_corresponding":false,"raw_author_name":"Tunjung Mahatmanto","raw_affiliation_strings":["Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Food Science and Biotechnology, Faculty of Agricultural Technology, Universitas Brawijaya, Jl. MT Haryono 169, Malang 65145 Indonesia","institution_ids":["https://openalex.org/I177055848"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5021430616"],"corresponding_institution_ids":["https://openalex.org/I41461413"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.79247279,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"37","issue":"3","first_page":"37","last_page":"62"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.5429999828338623,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11229","display_name":"Genetics and Plant Breeding","score":0.5429999828338623,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11264","display_name":"Coffee research and impacts","score":0.39480000734329224,"subfield":{"id":"https://openalex.org/subfields/2736","display_name":"Pharmacology (medical)"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12630","display_name":"African Botany and Ecology Studies","score":0.014399999752640724,"subfield":{"id":"https://openalex.org/subfields/1107","display_name":"Forestry"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/coffea-liberica","display_name":"Coffea liberica","score":0.9890000224113464},{"id":"https://openalex.org/keywords/phenotypic-variation","display_name":"phenotypic variability","score":0.968999981880188},{"id":"https://openalex.org/keywords/coffee-agroforestry","display_name":"coffee agroforestry","score":0.7350000143051147},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.6079999804496765},{"id":"https://openalex.org/keywords/vegetative-growth","display_name":"vegetative growth","score":0.6850000023841858},{"id":"https://openalex.org/keywords/peat-soils","display_name":"peat soils","score":0.656000018119812},{"id":"https://openalex.org/keywords/soil-acidity","display_name":"soil acidity","score":0.7160000205039978},{"id":"https://openalex.org/keywords/sumatra","display_name":"Sumatra","score":0.7559999823570251},{"id":"https://openalex.org/keywords/java","display_name":"Java","score":0.9879999756813049},{"id":"https://openalex.org/keywords/local-genetic-resources","display_name":"local genetic resources","score":0.6480000019073486}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6182000041007996},{"id":"https://openalex.org/C54286561","wikidata":"https://www.wikidata.org/wiki/Q397350","display_name":"Agroforestry","level":1,"score":0.5329999923706055},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.42969998717308044},{"id":"https://openalex.org/C156663261","wikidata":"https://www.wikidata.org/wiki/Q396338","display_name":"Agroecology","level":3,"score":0.41760000586509705},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.37139999866485596},{"id":"https://openalex.org/C194187813","wikidata":"https://www.wikidata.org/wiki/Q3073371","display_name":"Genetic erosion","level":4,"score":0.3431999981403351},{"id":"https://openalex.org/C106934330","wikidata":"https://www.wikidata.org/wiki/Q1971873","display_name":"Trait","level":2,"score":0.3230000138282776},{"id":"https://openalex.org/C548217200","wikidata":"https://www.wikidata.org/wiki/Q251","display_name":"Java","level":2,"score":0.3174000084400177},{"id":"https://openalex.org/C2994352824","wikidata":"https://www.wikidata.org/wiki/Q51969195","display_name":"Genetic resources","level":2,"score":0.2994999885559082},{"id":"https://openalex.org/C27438332","wikidata":"https://www.wikidata.org/wiki/Q2873","display_name":"Principal component analysis","level":2,"score":0.296099990606308},{"id":"https://openalex.org/C103017160","wikidata":"https://www.wikidata.org/wiki/Q1360410","display_name":"Coppicing","level":3,"score":0.29330000281333923},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.2865000069141388},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.2651999890804291}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.21315/tlsr2026.37.3.3","doi":"https://doi.org/10.21315/tlsr2026.37.3.3","is_oa":true,"landing_page_url":"https://doi.org/10.21315/tlsr2026.37.3.3","pdf_url":null,"source":{"id":"https://openalex.org/S2764848098","display_name":"Tropical Life Sciences Research","issn_l":"1985-3718","issn":["1985-3718","2180-4249"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310321392","host_organization_name":"Penerbit Universiti Sains Malaysia","host_organization_lineage":["https://openalex.org/P4310321392"],"host_organization_lineage_names":["Penerbit Universiti Sains Malaysia"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Tropical Life Sciences Research","raw_type":"journal-article"},{"id":"pmid:42997713","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42997713","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Tropical life sciences research","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.21315/tlsr2026.37.3.3","doi":"https://doi.org/10.21315/tlsr2026.37.3.3","is_oa":true,"landing_page_url":"https://doi.org/10.21315/tlsr2026.37.3.3","pdf_url":null,"source":{"id":"https://openalex.org/S2764848098","display_name":"Tropical Life Sciences Research","issn_l":"1985-3718","issn":["1985-3718","2180-4249"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-b","poland-40","russia-white-list-2"],"host_organization":"https://openalex.org/P4310321392","host_organization_name":"Penerbit Universiti Sains Malaysia","host_organization_lineage":["https://openalex.org/P4310321392"],"host_organization_lineage_names":["Penerbit Universiti Sains Malaysia"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Tropical Life Sciences Research","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.9208999872207642,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"},{"score":0.4390000104904175,"display_name":"Life on land","id":"https://metadata.un.org/sdg/15"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7204792338","https://openalex.org/W7152375506","https://openalex.org/W4381890717","https://openalex.org/W7167928818","https://openalex.org/W7160330741","https://openalex.org/W4386750011","https://openalex.org/W4393373248","https://openalex.org/W3167183914","https://openalex.org/W4410513628","https://openalex.org/W3140413293"],"abstract_inverted_index":{"This":[0],"study":[1],"reveals":[2],"the":[3,50,53,77,92,104,115,122,139,151,164],"phenotype":[4],"diversity":[5],"of":[6,52,67,71,91,103,141,153,166],"Liberoid":[7,110],"coffee":[8,111,144],"in":[9,28,36,107,124,150],"three":[10,83],"agroforestry":[11,171],"landscapes":[12],"on":[13,170],"two":[14],"islands":[15],"(Sumatra":[16],"and":[17,23,30,33,55,59],"Java)":[18],"with":[19,86],"contrasting":[20],"soil":[21,106,123],"conditions":[22,102],"microclimates,":[24],"namely":[25],"Betara":[26],"(Jambi)":[27],"peatlands,":[29],"Wonosalam":[31],"(Jombang)":[32],"Silo":[34],"(Jember)":[35],"mineral":[37],"soils.":[38],"Principal":[39],"Component":[40],"Analysis":[41],"(PCA)":[42],"shows":[43],"that":[44,76],"primary":[45],"variation":[46],"is":[47,80],"determined":[48],"by":[49],"character":[51],"fruit":[54],"seeds,":[56],"while":[57,89,121],"size":[58],"vegetative":[60,132],"structure":[61],"contribute":[62],"as":[63,157,159],"an":[64],"additional":[65],"source":[66],"diversity.":[68],"The":[69,100],"results":[70,137],"hierarchical":[72],"clustering":[73],"(AHC)":[74],"show":[75],"Jambi":[78,108],"population":[79],"divided":[81],"into":[82],"small":[84,116],"groups":[85],"high":[87],"heterogeneity,":[88],"most":[90],"Javanese":[93],"genotypes":[94],"tend":[95],"to":[96,112,114,128],"be":[97,129],"more":[98,134],"homogeneous.":[99],"acidic":[101],"peat":[105],"encourage":[109],"adapt":[113],"but":[117],"thick":[118],"pulp":[119],"fruit,":[120],"Java":[125],"(pH":[126],"tends":[127],"neutral)":[130],"stimulates":[131],"growth":[133],"rapidly.":[135],"These":[136],"confirm":[138],"urgency":[140],"preserving":[142],"local":[143],"genetic":[145],"resources":[146],"for":[147,163],"plant":[148],"resilience":[149],"face":[152],"various":[154],"agroecological":[155],"pressures,":[156],"well":[158],"being":[160],"a":[161],"foothold":[162],"breeding":[165],"adaptive":[167],"varieties":[168],"based":[169],"landscapes.":[172]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-10-29T00:00:00"}
