{"id":"https://openalex.org/W7224083181","doi":"https://doi.org/10.1128/mra.01033-26","title":"Complete genome sequence of Mycobacterium avium subsp. hominissuis strain Jp1289, isolated from a lymph node of a pig in Germany","display_name":"Complete genome sequence of Mycobacterium avium subsp. hominissuis strain Jp1289, isolated from a lymph node of a pig in Germany","publication_year":2026,"publication_date":"2026-10-28","ids":{"openalex":"https://openalex.org/W7224083181","doi":"https://doi.org/10.1128/mra.01033-26","pmid":"https://pubmed.ncbi.nlm.nih.gov/42949298"},"language":"en","primary_location":{"id":"doi:10.1128/mra.01033-26","doi":"https://doi.org/10.1128/mra.01033-26","is_oa":true,"landing_page_url":"https://doi.org/10.1128/mra.01033-26","pdf_url":null,"source":{"id":"https://openalex.org/S4210232526","display_name":"Microbiology Resource Announcements","issn_l":"2576-098X","issn":["2576-098X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","poland-20","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Resource Announcements","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1128/mra.01033-26","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066035307","display_name":"Petra M\u00f6bius","orcid":"https://orcid.org/0000-0002-5574-2998","observed_orcids":["https://orcid.org/0000-0002-5574-2998"]},"institutions":[{"id":"https://openalex.org/I1310048521","display_name":"Friedrich-Loeffler-Institut","ror":"https://ror.org/025fw7a54","country_code":"DE","type":"government","lineage":["https://openalex.org/I1310048521","https://openalex.org/I2801963157"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Petra M\u00f6bius","raw_affiliation_strings":["Institute of Molecular Pathogenesis, Friedrich-Loeffler-Institut (Federal Research Institute for Animal Health)"],"raw_orcid":"https://orcid.org/0000-0002-5574-2998","affiliations":[{"raw_affiliation_string":"Institute of Molecular Pathogenesis, Friedrich-Loeffler-Institut (Federal Research Institute for Animal Health)","institution_ids":["https://openalex.org/I1310048521"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5003426357","display_name":"Daniel Wibberg","orcid":"https://orcid.org/0000-0002-1331-4311","observed_orcids":["https://orcid.org/0000-0002-1331-4311"]},"institutions":[{"id":"https://openalex.org/I171892758","display_name":"Forschungszentrum J\u00fclich","ror":"https://ror.org/02nv7yv05","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I171892758"]},{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Wibberg","raw_affiliation_strings":["Center for Biotechnology (CeBiTec), Bielefeld University","Institute of Bio- and Geosciences IBG-5 - Computational Metagenomics, Forschungszentrum J\u00fclich GmbH"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Biotechnology (CeBiTec), Bielefeld University","institution_ids":["https://openalex.org/I20121455"]},{"raw_affiliation_string":"Institute of Bio- and Geosciences IBG-5 - Computational Metagenomics, Forschungszentrum J\u00fclich GmbH","institution_ids":["https://openalex.org/I171892758"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.8710487,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":"e0103326","last_page":"e0103326"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11316","display_name":"Mycobacterium research and diagnosis","score":0.9994999766349792,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mycobacterium-avium-subsp-hominissuis","display_name":"Mycobacterium avium subsp. hominissuis","score":0.9940000176429749},{"id":"https://openalex.org/keywords/complete-genome-sequence","display_name":"complete genome sequence","score":0.8759999871253967},{"id":"https://openalex.org/keywords/nontuberculous-mycobacteria","display_name":"nontuberculous mycobacteria","score":0.8930000066757202},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.5320000052452087},{"id":"https://openalex.org/keywords/protein-coding-genes","display_name":"protein-coding genes","score":0.6330000162124634},{"id":"https://openalex.org/keywords/rna-genes","display_name":"RNA genes","score":0.8889999985694885},{"id":"https://openalex.org/keywords/pigs","display_name":"pigs","score":0.36800000071525574}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7670999765396118},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.7226999998092651},{"id":"https://openalex.org/C2778022156","wikidata":"https://www.wikidata.org/wiki/Q576145","display_name":"Strain (injury)","level":2,"score":0.6840999722480774},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6805999875068665},{"id":"https://openalex.org/C2780374374","wikidata":"https://www.wikidata.org/wiki/Q194309","display_name":"Mycobacterium","level":3,"score":0.5253999829292297},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5097000002861023},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.47940000891685486},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4131999909877777},{"id":"https://openalex.org/C2775961462","wikidata":"https://www.wikidata.org/wiki/Q6946984","display_name":"Mycobacterium avium-intracellulare infection","level":4,"score":0.36899998784065247},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.32899999618530273},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.3253999948501587},{"id":"https://openalex.org/C157887575","wikidata":"https://www.wikidata.org/wiki/Q417216","display_name":"Insertion sequence","level":5,"score":0.3228999972343445},{"id":"https://openalex.org/C2780849966","wikidata":"https://www.wikidata.org/wiki/Q170758","display_name":"Lymph node","level":2,"score":0.31529998779296875},{"id":"https://openalex.org/C91779695","wikidata":"https://www.wikidata.org/wiki/Q3780824","display_name":"Coding region","level":3,"score":0.3151000142097473},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3057999908924103},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.28139999508857727},{"id":"https://openalex.org/C2778497218","wikidata":"https://www.wikidata.org/wiki/Q133447","display_name":"Mycobacterium bovis","level":4,"score":0.2728999853134155},{"id":"https://openalex.org/C84148353","wikidata":"https://www.wikidata.org/wiki/Q863908","display_name":"Nucleic acid sequence","level":3,"score":0.2606000006198883}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1128/mra.01033-26","doi":"https://doi.org/10.1128/mra.01033-26","is_oa":true,"landing_page_url":"https://doi.org/10.1128/mra.01033-26","pdf_url":null,"source":{"id":"https://openalex.org/S4210232526","display_name":"Microbiology Resource Announcements","issn_l":"2576-098X","issn":["2576-098X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","poland-20","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Resource Announcements","raw_type":"journal-article"},{"id":"pmid:42949298","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42949298","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology resource announcements","raw_type":"Journal Article"},{"id":"pmh:oai:www.openagrar.de:openagrar_mods_00118406","doi":null,"is_oa":true,"landing_page_url":"https://www.openagrar.de/receive/openagrar_mods_00118406","pdf_url":null,"source":{"id":"https://openalex.org/S7407055137","display_name":"OpenAgrar","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1128/mra.01033-26","doi":"https://doi.org/10.1128/mra.01033-26","is_oa":true,"landing_page_url":"https://doi.org/10.1128/mra.01033-26","pdf_url":null,"source":{"id":"https://openalex.org/S4210232526","display_name":"Microbiology Resource Announcements","issn_l":"2576-098X","issn":["2576-098X"],"is_oa":true,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","poland-20","russia-white-list-3","vabb-shw"],"host_organization":"https://openalex.org/P4310320263","host_organization_name":"American Society for Microbiology","host_organization_lineage":["https://openalex.org/P4310320263"],"host_organization_lineage_names":["American Society for Microbiology"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Microbiology Resource Announcements","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4000000059604645,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W1837184534","https://openalex.org/W1996551279","https://openalex.org/W2033517132","https://openalex.org/W2098741870","https://openalex.org/W2138442694","https://openalex.org/W2470052926","https://openalex.org/W2505278498","https://openalex.org/W2950354111","https://openalex.org/W4226132719","https://openalex.org/W4285799046","https://openalex.org/W4409057998","https://openalex.org/W4410896594","https://openalex.org/W4415881079"],"related_works":["https://openalex.org/W2991405331","https://openalex.org/W2422439606","https://openalex.org/W4243580140","https://openalex.org/W7133912386","https://openalex.org/W4205418745","https://openalex.org/W4206124710","https://openalex.org/W3165996526","https://openalex.org/W2607050135","https://openalex.org/W3152596345","https://openalex.org/W2903168953"],"abstract_inverted_index":{"ABSTRACT":[0],"Here,":[1],"we":[2],"provide":[3],"the":[4,9],"complete":[5],"genome":[6],"sequence":[7],"of":[8,22],"Mycobacterium":[10],"avium":[11],"subsp.":[12],"hominissuis":[13],"strain":[14,30],"Jp1289":[15],"isolated":[16],"from":[17],"an":[18],"enlarged":[19],"lymph":[20],"node":[21],"a":[23,32],"slaughtered":[24],"pig":[25],"in":[26],"southern":[27],"Germany.":[28],"The":[29],"has":[31],"5,061,038":[33],"bp":[34],"circular":[35],"chromosome.":[36],"Genome":[37],"annotation":[38],"predicted":[39],"4,081":[40],"coding":[41],"genes":[42],"and":[43],"59":[44],"RNA":[45],"genes.":[46]},"counts_by_year":[],"updated_date":"2026-10-31T12:09:11.096373","created_date":"2026-10-29T00:00:00"}