{"id":"https://openalex.org/W7223649779","doi":"https://doi.org/10.6084/m9.figshare.34410789","title":"Diverse phages found from food metagenomes reveal hidden diversity and potential associations with the human microbiome","display_name":"Diverse phages found from food metagenomes reveal hidden diversity and potential associations with the human microbiome","publication_year":2026,"publication_date":"2026-10-26","ids":{"openalex":"https://openalex.org/W7223649779","doi":"https://doi.org/10.6084/m9.figshare.34410789"},"language":"en","primary_location":{"id":"doi:10.6084/m9.figshare.34410789","doi":"https://doi.org/10.6084/m9.figshare.34410789","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.34410789","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"volume":null,"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.6084/m9.figshare.34410789","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5159591356","display_name":"Jingkai Ji","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jingkai Ji","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159724101","display_name":"Xinyan Chen","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xinyan Chen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159644893","display_name":"Xinran Zhang","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Xinran Zhang","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159667547","display_name":"Jiawen Zhou","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jiawen Zhou","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059613162","display_name":"Zhong Jinxia","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Jinxia Zhong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159580348","display_name":"Nianying Chen","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nianying Chen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159684258","display_name":"Juan Li","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Juan Li","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5139316190","display_name":"Weifeng Shi","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Weifeng Shi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.81923157,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":1.0,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.0,"subfield":{"id":"https://openalex.org/subfields/1310","display_name":"Endocrinology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phage-diversity","display_name":"phage diversity","score":0.6330000162124634},{"id":"https://openalex.org/keywords/caudoviricetes","display_name":"Caudoviricetes","score":0.9020000100135803},{"id":"https://openalex.org/keywords/novel-viral-lineages","display_name":"novel viral lineages","score":0.9039999842643738},{"id":"https://openalex.org/keywords/metagenome-assembled-genomes","display_name":"metagenome-assembled genomes","score":0.8830000162124634},{"id":"https://openalex.org/keywords/gut-microbiota","display_name":"gut microbiota","score":0.7549999952316284},{"id":"https://openalex.org/keywords/oral-microbiota","display_name":"oral microbiota","score":0.9959999918937683},{"id":"https://openalex.org/keywords/viral-operational-taxonomic-units","display_name":"viral operational taxonomic units","score":0.8050000071525574}],"concepts":[{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.8226000070571899},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.809499979019165},{"id":"https://openalex.org/C91066513","wikidata":"https://www.wikidata.org/wiki/Q38348","display_name":"Phylum","level":3,"score":0.6790000200271606},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.5703999996185303},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5375999808311462},{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.5246999859809875},{"id":"https://openalex.org/C3019978661","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut microbiome","level":3,"score":0.48590001463890076},{"id":"https://openalex.org/C2776441376","wikidata":"https://www.wikidata.org/wiki/Q165028","display_name":"Bacteriophage","level":4,"score":0.46209999918937683},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3917999863624573},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.3723999857902527},{"id":"https://openalex.org/C2779825944","wikidata":"https://www.wikidata.org/wiki/Q7097792","display_name":"Operational taxonomic unit","level":4,"score":0.35760000348091125},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.353300005197525},{"id":"https://openalex.org/C190944805","wikidata":"https://www.wikidata.org/wiki/Q3922751","display_name":"Human Microbiome Project","level":4,"score":0.33869999647140503},{"id":"https://openalex.org/C91478284","wikidata":"https://www.wikidata.org/wiki/Q6623796","display_name":"Human microbiome","level":3,"score":0.3366999924182892},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3319999873638153},{"id":"https://openalex.org/C539455810","wikidata":"https://www.wikidata.org/wiki/Q739734","display_name":"Gut flora","level":2,"score":0.3260999917984009},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.3208000063896179},{"id":"https://openalex.org/C2987857752","wikidata":"https://www.wikidata.org/wiki/Q12147","display_name":"Human health","level":2,"score":0.3206000030040741},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3174999952316284},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.31459999084472656},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.3100999891757965},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2924000024795532},{"id":"https://openalex.org/C58684123","wikidata":"https://www.wikidata.org/wiki/Q1810993","display_name":"Food microbiology","level":3,"score":0.27390000224113464},{"id":"https://openalex.org/C37193104","wikidata":"https://www.wikidata.org/wiki/Q191934","display_name":"Commensalism","level":3,"score":0.2696000039577484},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.2696000039577484},{"id":"https://openalex.org/C2781316041","wikidata":"https://www.wikidata.org/wiki/Q1230584","display_name":"Diversity (politics)","level":2,"score":0.2513999938964844},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.25130000710487366}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.6084/m9.figshare.34410789","doi":"https://doi.org/10.6084/m9.figshare.34410789","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.34410789","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.6084/m9.figshare.34410789.v1","doi":"https://doi.org/10.6084/m9.figshare.34410789.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.34410789.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.6084/m9.figshare.34410789","doi":"https://doi.org/10.6084/m9.figshare.34410789","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.34410789","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6000000238418579},{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.4359000027179718}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7141378263","https://openalex.org/W7134993199","https://openalex.org/W2080651354","https://openalex.org/W7213564252","https://openalex.org/W7129600366","https://openalex.org/W3162018406","https://openalex.org/W4412659895","https://openalex.org/W7125859886","https://openalex.org/W3038753357","https://openalex.org/W2006995996"],"abstract_inverted_index":{"Foods":[0],"harbor":[1],"a":[2,36,159],"rich":[3],"diversity":[4,170],"of":[5,26,39,58,77,162,205],"viruses":[6],"alongside":[7],"bacteria":[8],"and":[9,55,92,103,130,139,148,171,188,196],"fungi.":[10],"By":[11],"analyzing":[12],"3,013":[13],"food":[14,157],"metagenomic":[15],"data":[16],"sets":[17],"from,":[18],"we":[19,71],"identified":[20],"2,325":[21],"high-quality":[22],"viral":[23,43,113,163],"sequences,":[24,164],"93.7%":[25],"which":[27,167],"were":[28,134],"bacteriophages":[29],"belonging":[30],"to":[31,51,75,136,192,208],"the":[32,52,78,83,95,190,202],"class":[33],"Caudoviricetes.":[34],"Notably,":[35],"substantial":[37],"proportion":[38],"these":[40],"represent":[41],"novel":[42],"lineages.":[44],"Only":[45],"~50%":[46],"could":[47],"be":[48],"taxonomically":[49],"resolved":[50],"genus":[53],"level,":[54],"only":[56,122],"36.3%":[57],"predicted":[59,135],"genes":[60],"had":[61],"known":[62],"functions.":[63],"Using":[64],"10,112":[65],"food-derived":[66],"prokaryotic":[67],"metagenome-assembled":[68],"genomes":[69],"(MAGs),":[70],"assigned":[72],"putative":[73],"hosts":[74],"62.4%":[76],"foodborne":[79,110,132,206],"phages.":[80,127],"Bacillota":[81],"was":[82],"predominant":[84],"phylum":[85],"(>50%),":[86],"followed":[87],"by":[88],"Pseudomonadota,":[89],"with":[90,118,125,181,185],"Lactobacillales":[91],"Enterobacterales":[93],"as":[94],"dominant":[96],"orders.":[97],"Comparative":[98],"analysis":[99],"against":[100],"4,709":[101],"oral":[102,126,138,147,186,195],"58,661":[104],"gut":[105,119,140,150,182,197],"phages":[106,111,133,176,183,207],"revealed":[107],"that":[108,156],"335":[109],"shared":[112],"operational":[114],"taxonomic":[115],"unit":[116],"(vOTUs)":[117],"phages,":[120,187],"whereas":[121],"2":[123],"overlapped":[124],"Furthermore,":[128],"566":[129],"656":[131],"target":[137,193],"microbial":[141],"communities,":[142],"respectively,":[143],"based":[144],"on":[145],"3,426":[146],"4,744":[149],"MAGs.":[151],"Collectively,":[152],"our":[153],"findings":[154,200],"demonstrate":[155],"contains":[158],"vast":[160],"repertoire":[161],"predominantly":[165],"bacteriophages,":[166],"exhibit":[168],"remarkable":[169],"are":[172],"largely":[173],"unclassified.":[174],"Foodborne":[175],"show":[177],"greater":[178],"genomic":[179],"overlap":[180],"than":[184],"possess":[189],"capacity":[191],"both":[194],"microbiota.":[198],"These":[199],"highlight":[201],"significant":[203],"potential":[204],"influence":[209],"human":[210],"commensal":[211],"microorganisms.":[212]},"counts_by_year":[],"updated_date":"2026-10-29T09:56:32.521200","created_date":"2026-10-27T00:00:00"}