{"id":"https://openalex.org/W7223548926","doi":"https://doi.org/10.64898/2026.10.22.760871","title":"RnR-ExM: Robust Non-rigid Registration Challenge for Expansion Microscopy Volumes","display_name":"RnR-ExM: Robust Non-rigid Registration Challenge for Expansion Microscopy Volumes","publication_year":2026,"publication_date":"2026-10-25","ids":{"openalex":"https://openalex.org/W7223548926","doi":"https://doi.org/10.64898/2026.10.22.760871","pmid":"https://pubmed.ncbi.nlm.nih.gov/42996004","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13738736"},"language":"en","primary_location":{"id":"doi:10.64898/2026.10.22.760871","doi":"https://doi.org/10.64898/2026.10.22.760871","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.22.760871","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/25/2026.10.22.760871.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/25/2026.10.22.760871.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5094318646","display_name":"Emma Besier","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Emma Besier","raw_affiliation_strings":["Harvard University, Cambridge, MA 02138, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University, Cambridge, MA 02138, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101615863","display_name":"Ruihan Zhang","orcid":"https://orcid.org/0000-0002-1564-5907","observed_orcids":["https://orcid.org/0000-0002-1564-5907"]},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ruihan Zhang","raw_affiliation_strings":["Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101878895","display_name":"Yosuke Bando","orcid":"https://orcid.org/0000-0002-9150-6503","observed_orcids":["https://orcid.org/0000-0002-9150-6503"]},"institutions":[{"id":"https://openalex.org/I4405260140","display_name":"KIOXIA Corporation (Japan)","ror":"https://ror.org/03ac4tk02","country_code":"JP","type":"company","lineage":["https://openalex.org/I4405260140"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yosuke Bando","raw_affiliation_strings":["Kioxia Corporation, Yokohama, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kioxia Corporation, Yokohama, Japan","institution_ids":["https://openalex.org/I4405260140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104269593","display_name":"Mansour Alawi","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210126820","display_name":"Fixstars Solutions (United States)","ror":"https://ror.org/035myfa14","country_code":"US","type":"company","lineage":["https://openalex.org/I4210126820"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mansour Alawi","raw_affiliation_strings":["Fixstars Solutions, Inc., Irvine, CA 92618, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fixstars Solutions, Inc., Irvine, CA 92618, USA","institution_ids":["https://openalex.org/I4210126820"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025986101","display_name":"Yves Qu\u00e9m\u00e9ner","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210126820","display_name":"Fixstars Solutions (United States)","ror":"https://ror.org/035myfa14","country_code":"US","type":"company","lineage":["https://openalex.org/I4210126820"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yves Qu\u00e9m\u00e9ner","raw_affiliation_strings":["Fixstars Solutions, Inc., Irvine, CA 92618, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fixstars Solutions, Inc., Irvine, CA 92618, USA","institution_ids":["https://openalex.org/I4210126820"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090708517","display_name":"Chaitanya Kapoor","orcid":"https://orcid.org/0000-0001-6975-7819","observed_orcids":["https://orcid.org/0000-0001-6975-7819"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chaitanya Kapoor","raw_affiliation_strings":["University of California, San Diego, San Diego, CA 92093, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, San Diego, San Diego, CA 92093, USA","institution_ids":["https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101559837","display_name":"Malte Hoffmann","orcid":"https://orcid.org/0000-0002-5511-0739","observed_orcids":["https://orcid.org/0000-0002-5511-0739"]},"institutions":[{"id":"https://openalex.org/I4210127055","display_name":"Athinoula A. Martinos Center for Biomedical Imaging","ror":"https://ror.org/032q5ym94","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Malte Hoffmann","raw_affiliation_strings":["Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA 02129, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA 02129, USA","institution_ids":["https://openalex.org/I4210127055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5158698548","display_name":"Adrian Dalca","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210127055","display_name":"Athinoula A. Martinos Center for Biomedical Imaging","ror":"https://ror.org/032q5ym94","country_code":"US","type":"facility","lineage":["https://openalex.org/I136199984","https://openalex.org/I4210087915","https://openalex.org/I4210127055","https://openalex.org/I48633490","https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adrian Dalca","raw_affiliation_strings":["Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA 02129, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Athinoula A. Martinos Center for Biomedical Imaging, Charlestown, MA 02129, USA","institution_ids":["https://openalex.org/I4210127055"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129324057","display_name":"Adri\u00e0 Casamitjana","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I251424209","display_name":"Universitat de Girona","ror":"https://ror.org/01xdxns91","country_code":"ES","type":"education","lineage":["https://openalex.org/I251424209"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Adri\u00e0 Casamitjana","raw_affiliation_strings":["Universitat de Girona, Girona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universitat de Girona, Girona, Spain","institution_ids":["https://openalex.org/I251424209"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021284069","display_name":"Ignacio Arganda\u2010Carreras","orcid":"https://orcid.org/0000-0003-0229-5722","observed_orcids":["https://orcid.org/0000-0003-0229-5722"]},"institutions":[{"id":"https://openalex.org/I110594554","display_name":"Ikerbasque","ror":"https://ror.org/01cc3fy72","country_code":"ES","type":"other","lineage":["https://openalex.org/I110594554"]},{"id":"https://openalex.org/I169108374","display_name":"University of the Basque Country","ror":"https://ror.org/000xsnr85","country_code":"ES","type":"education","lineage":["https://openalex.org/I169108374"]},{"id":"https://openalex.org/I4210118072","display_name":"Instituto Biofisika","ror":"https://ror.org/01pf2cj55","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I169108374","https://openalex.org/I4210118072"]},{"id":"https://openalex.org/I47686490","display_name":"Donostia International Physics Center","ror":"https://ror.org/02e24yw40","country_code":"ES","type":"other","lineage":["https://openalex.org/I47686490"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ignacio Arganda-Carreras","raw_affiliation_strings":["Biofisika Institute, Leioa, 48940, Spain","Donostia International Physics Center (DIPC), San Sebastian, 20018, Spain","Ikerbasque, Basque Foundation for Science, Bilbao, 48009, Spain","University of the Basque Country (UPV/EHU), San Sebastian, 20018, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biofisika Institute, Leioa, 48940, Spain","institution_ids":["https://openalex.org/I4210118072"]},{"raw_affiliation_string":"Donostia International Physics Center (DIPC), San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I47686490"]},{"raw_affiliation_string":"Ikerbasque, Basque Foundation for Science, Bilbao, 48009, Spain","institution_ids":["https://openalex.org/I110594554"]},{"raw_affiliation_string":"University of the Basque Country (UPV/EHU), San Sebastian, 20018, Spain","institution_ids":["https://openalex.org/I169108374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049081004","display_name":"Greg M. Fleishman","orcid":"https://orcid.org/0000-0003-1879-6521","observed_orcids":["https://orcid.org/0000-0003-1879-6521"]},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Greg Fleishman","raw_affiliation_strings":["Janelia Research Campus, Ashburn, VA 20147, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Janelia Research Campus, Ashburn, VA 20147, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159510653","display_name":"Xi Jia","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Xi Jia","raw_affiliation_strings":["University of Birmingham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078754523","display_name":"Jinming Duan","orcid":"https://orcid.org/0000-0002-5108-2128","observed_orcids":["https://orcid.org/0000-0002-5108-2128"]},"institutions":[{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jinming Duan","raw_affiliation_strings":["University of Birmingham, UK","University of Manchester, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Birmingham, UK","institution_ids":["https://openalex.org/I79619799"]},{"raw_affiliation_string":"University of Manchester, UK","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159476303","display_name":"Tony C W Mok","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405281272","display_name":"Alibaba DAMO Academy (China)","ror":"https://ror.org/0448px924","country_code":"CN","type":"company","lineage":["https://openalex.org/I4405281272","https://openalex.org/I45928872"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tony C. W. Mok","raw_affiliation_strings":["Alibaba DAMO Academy, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Alibaba DAMO Academy, Hangzhou, China","institution_ids":["https://openalex.org/I4405281272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5159544707","display_name":"Zi Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405281272","display_name":"Alibaba DAMO Academy (China)","ror":"https://ror.org/0448px924","country_code":"CN","type":"company","lineage":["https://openalex.org/I4405281272","https://openalex.org/I45928872"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zi Li","raw_affiliation_strings":["Alibaba DAMO Academy, Hangzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Alibaba DAMO Academy, Hangzhou, China","institution_ids":["https://openalex.org/I4405281272"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009567403","display_name":"Margaret E. Schroeder","orcid":"https://orcid.org/0000-0002-2228-7482","observed_orcids":["https://orcid.org/0000-0002-2228-7482"]},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Margaret E. Schroeder","raw_affiliation_strings":["Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138451160","display_name":"Ed Boyden","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Edward S. Boyden","raw_affiliation_strings":["Massachusetts Institute of Technology, Cambridge, MA 02139, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Massachusetts Institute of Technology, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043151044","display_name":"Hanspeter Pfister","orcid":"https://orcid.org/0000-0002-3620-2582","observed_orcids":["https://orcid.org/0000-0002-3620-2582"]},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hanspeter Pfister","raw_affiliation_strings":["Harvard University, Cambridge, MA 02138, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Harvard University, Cambridge, MA 02138, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5085365474","display_name":"Donglai Wei","orcid":"https://orcid.org/0000-0002-2329-5484","observed_orcids":["https://orcid.org/0000-0002-2329-5484","https://orcid.org/0000-0002-5614-1633"]},"institutions":[{"id":"https://openalex.org/I103531236","display_name":"Boston College","ror":"https://ror.org/02n2fzt79","country_code":"US","type":"education","lineage":["https://openalex.org/I103531236"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Donglai Wei","raw_affiliation_strings":["Computer Science Department, Boston College, Chestnut Hill, MA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, Boston College, Chestnut Hill, MA, USA","institution_ids":["https://openalex.org/I103531236"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":17,"corresponding_author_ids":["https://openalex.org/A5085365474"],"corresponding_institution_ids":["https://openalex.org/I103531236"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.5654000043869019,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.5654000043869019,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.31029999256134033,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.029100000858306885,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/expansion-microscopy","display_name":"expansion microscopy","score":0.9890000224113464},{"id":"https://openalex.org/keywords/benchmark-challenge","display_name":"benchmark challenge","score":0.6629999876022339},{"id":"https://openalex.org/keywords/synthetic-training-data","display_name":"synthetic training data","score":0.6970000267028809},{"id":"https://openalex.org/keywords/nuclei-segmentation","display_name":"nuclei segmentation","score":0.6439999938011169},{"id":"https://openalex.org/keywords/blood-vessel-segmentation","display_name":"blood vessel segmentation","score":0.9570000171661377},{"id":"https://openalex.org/keywords/zebrafish","display_name":"zebrafish","score":0.796999990940094},{"id":"https://openalex.org/keywords/mice","display_name":"mice","score":0.9869999885559082},{"id":"https://openalex.org/keywords/caenorhabditis-elegans","display_name":"Caenorhabditis elegans","score":0.9869999885559082},{"id":"https://openalex.org/keywords/learning-based-registration","display_name":"learning-based registration","score":0.5809999704360962}],"concepts":[{"id":"https://openalex.org/C166704113","wikidata":"https://www.wikidata.org/wiki/Q861092","display_name":"Image registration","level":3,"score":0.6890000104904175},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6171000003814697},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.616100013256073},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6025999784469604},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5824000239372253},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5626999735832214},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.44920000433921814},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.3662000000476837},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.3465000092983246},{"id":"https://openalex.org/C16345878","wikidata":"https://www.wikidata.org/wiki/Q107472979","display_name":"Orientation (vector space)","level":2,"score":0.3422999978065491},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.33250001072883606},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.33169999718666077},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.3158999979496002},{"id":"https://openalex.org/C67226441","wikidata":"https://www.wikidata.org/wiki/Q1665389","display_name":"Robust statistics","level":3,"score":0.30869999527931213},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.3000999987125397},{"id":"https://openalex.org/C19275194","wikidata":"https://www.wikidata.org/wiki/Q222903","display_name":"Multiplexing","level":2,"score":0.28189998865127563},{"id":"https://openalex.org/C92757383","wikidata":"https://www.wikidata.org/wiki/Q382497","display_name":"Affine transformation","level":2,"score":0.2793999910354614},{"id":"https://openalex.org/C204366326","wikidata":"https://www.wikidata.org/wiki/Q3027650","display_name":"Deformation (meteorology)","level":2,"score":0.2761000096797943},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.2599000036716461},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25040000677108765}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.64898/2026.10.22.760871","doi":"https://doi.org/10.64898/2026.10.22.760871","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.22.760871","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/25/2026.10.22.760871.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:13738736","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13738736/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13738736/pdf/nihpp-2026.10.22.760871v1.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bioRxiv","raw_type":"Text"},{"id":"pmid:42996004","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42996004","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bioRxiv : the preprint server for biology","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.64898/2026.10.22.760871","doi":"https://doi.org/10.64898/2026.10.22.760871","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.22.760871","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/25/2026.10.22.760871.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1295478886","display_name":"CAREER: Scaling up Brain Circuit Reconstruction with Human-centric Machine Learning","funder_award_id":"2239688","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G2941220700","display_name":null,"funder_award_id":"IT2001\u201026","funder_id":"https://openalex.org/F4320321705","funder_display_name":"Eusko Jaurlaritza"},{"id":"https://openalex.org/G3042507351","display_name":null,"funder_award_id":"1R01EB024261","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6804949641","display_name":"Graduate Research Fellowship Program (GRFP)","funder_award_id":"1745302","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8193572665","display_name":"NCS-FO: Empowering Data-Driven Hypothesis Generation for Scalable Connectomics Analysis","funder_award_id":"2124179","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G9000073667","display_name":null,"funder_award_id":"1R01EB024261","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4026159580","display_name":"Schmidt Futures","ror":null},{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321705","display_name":"Eusko Jaurlaritza","ror":"https://ror.org/00pz2fp31"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":"https://ror.org/003x0zc53"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7223548926.pdf","grobid_xml":"https://content.openalex.org/works/W7223548926.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W2964121744","https://openalex.org/W4200630926"],"related_works":["https://openalex.org/W7128672561","https://openalex.org/W1599605005","https://openalex.org/W2294139648","https://openalex.org/W3015450039","https://openalex.org/W147400155","https://openalex.org/W4403496721","https://openalex.org/W16327819","https://openalex.org/W4220925647","https://openalex.org/W4403496115","https://openalex.org/W1590838653"],"abstract_inverted_index":{"Abstract":[0],"Expansion":[1],"Microscopy":[2],"(ExM)":[3],"enables":[4],"nanoscale":[5],"imaging":[6],"of":[7,40,68,77,97,126,153],"biological":[8,133],"samples":[9],"while":[10],"preserving":[11],"structural":[12,142],"and":[13,47,70,95,140,151,160,170],"molecular":[14,138],"details.":[15],"The":[16,35],"Robust":[17],"Non-rigid":[18],"Registration":[19],"Challenge":[20],"for":[21,53,75,87,131,163],"ExM":[22,33,127],"(RnR-ExM)":[23],"was":[24],"launched":[25],"to":[26,119],"benchmark":[27],"3D":[28,42,164],"registration":[29,125,165],"algorithms":[30],"on":[31],"real-world":[32],"datasets.":[34],"challenge":[36],"released":[37,85],"24":[38],"pairs":[39],"high-resolution":[41],"volumes":[43,128],"from":[44],"zebrafish,":[45],"mouse,":[46],"C.":[48],"elegans":[49],",":[50],"deliberately":[51],"selected":[52],"their":[54],"difficulty":[55],"with":[56,106],"standard":[57],"alignment":[58],"methods.":[59],"To":[60,80],"evaluate":[61],"performance,":[62],"we":[63,84,147],"provided":[64],"curated":[65],"segmentation":[66],"masks":[67],"nuclei":[69],"blood":[71],"vessels":[72],"as":[73,136],"landmarks":[74],"half":[76],"the":[78,93,98,112,114,149],"dataset.":[79],"encourage":[81],"learning-based":[82],"approaches,":[83],"code":[86,171],"generating":[88],"synthetic":[89],"training":[90],"data":[91],"reflecting":[92],"deformation":[94],"appearance":[96],"unlabeled":[99],"pairs.":[100],"By":[101],"submission,":[102],"168":[103],"participants":[104],"registered,":[105],"six":[107],"teams":[108],"submitting":[109],"results":[110,152],"by":[111],"deadline;":[113],"top":[115,155],"three":[116],"were":[117],"invited":[118],"present":[120],"at":[121,174],"ISBI":[122],"2023.":[123],"Accurate":[124],"is":[129],"essential":[130],"downstream":[132],"analyses":[134],"such":[135],"multiplexed":[137],"mapping":[139],"cell-type-specific":[141],"profiling.":[143],"In":[144],"this":[145],"paper,":[146],"detail":[148],"methods":[150],"these":[154],"teams,":[156],"highlighting":[157],"current":[158],"capabilities":[159],"future":[161],"directions":[162],"in":[166],"ExM.":[167],"All":[168],"datasets":[169],"are":[172],"available":[173],"https://rnr-exm.grand-challenge.org/":[175]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-10-26T00:00:00"}
