{"id":"https://openalex.org/W7221513439","doi":"https://doi.org/10.64898/2026.10.09.757983","title":"Metabolic reorganization shapes the dynamics of a water kefir microbial community","display_name":"Metabolic reorganization shapes the dynamics of a water kefir microbial community","publication_year":2026,"publication_date":"2026-10-12","ids":{"openalex":"https://openalex.org/W7221513439","doi":"https://doi.org/10.64898/2026.10.09.757983"},"language":"en","primary_location":{"id":"doi:10.64898/2026.10.09.757983","doi":"https://doi.org/10.64898/2026.10.09.757983","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.09.757983","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/12/2026.10.09.757983.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/12/2026.10.09.757983.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5120740960","display_name":"Marine Chambeaudie","orcid":"https://orcid.org/0009-0001-9178-0879","observed_orcids":["https://orcid.org/0009-0001-9178-0879"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marine Chambeaudie","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0009-0001-9178-0879","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021860314","display_name":"Delphine Maze","orcid":"https://orcid.org/0009-0003-0046-4294","observed_orcids":["https://orcid.org/0009-0003-0046-4294"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Delphine Maz\u00e9","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0009-0003-0046-4294","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003323482","display_name":"Marie Louise Cariou","orcid":"https://orcid.org/0000-0002-2544-579X","observed_orcids":["https://orcid.org/0000-0002-2544-579X"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4405276867","display_name":"Donn\u00e9es de recherche pour l'Histoire Naturelle, l'Ecologie et l'Environnement","ror":"https://ror.org/00k1kr151","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I4210123595","https://openalex.org/I4405276867"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie Cariou","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UAR 2047, DOHNEE, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-2544-579X","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UAR 2047, DOHNEE, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210123595","https://openalex.org/I4405276867"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020146660","display_name":"Evelyne Duvernois\u2010Berthet","orcid":"https://orcid.org/0000-0003-1442-6603","observed_orcids":["https://orcid.org/0000-0003-1442-6603"]},"institutions":[{"id":"https://openalex.org/I113428412","display_name":"\u00c9cole Normale Sup\u00e9rieure de Lyon","ror":"https://ror.org/04zmssz18","country_code":"FR","type":"education","lineage":["https://openalex.org/I113428412","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210143888","display_name":"Laboratoire Reproduction et D\u00e9veloppement des Plantes","ror":"https://ror.org/04w61vh47","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I203339264","https://openalex.org/I4210088668","https://openalex.org/I4210096427","https://openalex.org/I4210143888"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Evelyne Duvernois-Berthet","raw_affiliation_strings":["Laboratoire Reproduction et D\u00e9veloppement des Plantes, CNRS UMR 5667, \u00c9cole Normale Sup\u00e9rieure de Lyon, INRAE, Universit\u00e9 Claude Bernard, Lyon, France","Museum National d\u2019Histoire Naturelle, CNRS UMR7221, PHYMA, Paris, France"],"raw_orcid":"https://orcid.org/0000-0003-1442-6603","affiliations":[{"raw_affiliation_string":"Laboratoire Reproduction et D\u00e9veloppement des Plantes, CNRS UMR 5667, \u00c9cole Normale Sup\u00e9rieure de Lyon, INRAE, Universit\u00e9 Claude Bernard, Lyon, France","institution_ids":["https://openalex.org/I113428412","https://openalex.org/I1294671590","https://openalex.org/I4210088668","https://openalex.org/I4210143888"]},{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR7221, PHYMA, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210123595"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011027517","display_name":"Julien Mozziconacci","orcid":"https://orcid.org/0000-0001-5652-0302","observed_orcids":["https://orcid.org/0000-0001-5652-0302"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julien Mozziconacci","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-5652-0302","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5158431681","display_name":"Ekaterina Tulaeva","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ekaterina Tulaeva","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015468829","display_name":"Mathilde Courel","orcid":"https://orcid.org/0000-0003-1793-1963","observed_orcids":["https://orcid.org/0000-0003-1793-1963"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathilde Courel","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0003-1793-1963","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062753170","display_name":"Emmanuelle Delagoutte","orcid":"https://orcid.org/0000-0001-7185-524X","observed_orcids":["https://orcid.org/0000-0001-7185-524X"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Emmanuelle Delagoutte","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0001-7185-524X","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112354149","display_name":"Fernando Lopes","orcid":"https://orcid.org/0000-0002-9299-4983","observed_orcids":["https://orcid.org/0000-0002-9299-4983"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fernando Lopes","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-9299-4983","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067936176","display_name":"Christophe Lavelle","orcid":"https://orcid.org/0000-0002-7527-4589","observed_orcids":["https://orcid.org/0000-0002-7527-4589"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Lavelle","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-7527-4589","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025770177","display_name":"Jean-Baptiste Boul\u00e9","orcid":"https://orcid.org/0000-0002-0994-5831","observed_orcids":["https://orcid.org/0000-0002-0994-5831"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jean-Baptiste Boul\u00e9","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-0994-5831","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026043661","display_name":"Alexandra Joubert","orcid":"https://orcid.org/0000-0002-1072-0787","observed_orcids":["https://orcid.org/0000-0002-1072-0787"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I39804081","display_name":"Sorbonne Universit\u00e9","ror":"https://ror.org/02en5vm52","country_code":"FR","type":"education","lineage":["https://openalex.org/I39804081"]},{"id":"https://openalex.org/I4210123595","display_name":"Mus\u00e9um national d'Histoire naturelle","ror":"https://ror.org/03wkt5x30","country_code":"FR","type":"archive","lineage":["https://openalex.org/I4210123595"]},{"id":"https://openalex.org/I4210166728","display_name":"Structure et Instabilit\u00e9 des G\u00e9nomes","ror":"https://ror.org/05pchb838","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210128300","https://openalex.org/I4210166728"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Alexandra Joubert","raw_affiliation_strings":["Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France"],"raw_orcid":"https://orcid.org/0000-0002-1072-0787","affiliations":[{"raw_affiliation_string":"Museum National d\u2019Histoire Naturelle, CNRS UMR 7196, STRING, INSERM U1154, Sorbonne Universit\u00e9, Paris, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5026043661"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I39804081","https://openalex.org/I4210123595","https://openalex.org/I4210166728"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.5996000170707703,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10141","display_name":"Probiotics and Fermented Foods","score":0.5996000170707703,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10750","display_name":"Fermentation and Sensory Analysis","score":0.2468000054359436,"subfield":{"id":"https://openalex.org/subfields/1106","display_name":"Food Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.06560000032186508,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/water-kefir","display_name":"water kefir","score":0.9779999852180481},{"id":"https://openalex.org/keywords/microbial-community-dynamics","display_name":"microbial community dynamics","score":0.6909999847412109},{"id":"https://openalex.org/keywords/interspecies-interactions","display_name":"interspecies interactions","score":0.7789999842643738},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.9309999942779541},{"id":"https://openalex.org/keywords/lactic-acid-production","display_name":"lactic acid production","score":0.7490000128746033},{"id":"https://openalex.org/keywords/sugar-intake","display_name":"sugar consumption","score":0.8209999799728394},{"id":"https://openalex.org/keywords/ethanol-accumulation","display_name":"ethanol accumulation","score":0.8029999732971191},{"id":"https://openalex.org/keywords/co-culture-assay","display_name":"co-culture assay","score":0.6510000228881836},{"id":"https://openalex.org/keywords/microbial-succession","display_name":"microbial succession","score":0.30399999022483826}],"concepts":[{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.6689000129699707},{"id":"https://openalex.org/C2778072784","wikidata":"https://www.wikidata.org/wiki/Q185749","display_name":"Kefir","level":4,"score":0.6480000019073486},{"id":"https://openalex.org/C100544194","wikidata":"https://www.wikidata.org/wiki/Q41760","display_name":"Fermentation","level":2,"score":0.6442000269889832},{"id":"https://openalex.org/C101014631","wikidata":"https://www.wikidata.org/wiki/Q4889568","display_name":"Microbial metabolism","level":3,"score":0.5205000042915344},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.45969998836517334},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4555000066757202},{"id":"https://openalex.org/C2777108408","wikidata":"https://www.wikidata.org/wiki/Q11002","display_name":"Sugar","level":2,"score":0.4083000123500824},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.39399999380111694},{"id":"https://openalex.org/C2993927895","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolic activity","level":2,"score":0.3806999921798706},{"id":"https://openalex.org/C2777477808","wikidata":"https://www.wikidata.org/wiki/Q407595","display_name":"Metabolite","level":2,"score":0.3619000017642975},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3580000102519989},{"id":"https://openalex.org/C62231903","wikidata":"https://www.wikidata.org/wiki/Q1057","display_name":"Metabolism","level":2,"score":0.35350000858306885},{"id":"https://openalex.org/C150117547","wikidata":"https://www.wikidata.org/wiki/Q188230","display_name":"Ecological succession","level":2,"score":0.3440999984741211},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.328000009059906},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.3278999924659729},{"id":"https://openalex.org/C31903555","wikidata":"https://www.wikidata.org/wiki/Q1637030","display_name":"Food science","level":1,"score":0.32179999351501465},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.3086000084877014},{"id":"https://openalex.org/C183696295","wikidata":"https://www.wikidata.org/wiki/Q2487696","display_name":"Biochemical engineering","level":1,"score":0.2858999967575073},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.26989999413490295},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.2662000060081482}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.10.09.757983","doi":"https://doi.org/10.64898/2026.10.09.757983","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.09.757983","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/12/2026.10.09.757983.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.10.09.757983","doi":"https://doi.org/10.64898/2026.10.09.757983","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.09.757983","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/12/2026.10.09.757983.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320330232","display_name":"Sorbonne Universit\u00e9","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7221513439.pdf","grobid_xml":"https://content.openalex.org/works/W7221513439.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W3120785972","https://openalex.org/W4417159521","https://openalex.org/W2067742417","https://openalex.org/W4387305068","https://openalex.org/W2911806450","https://openalex.org/W7130525209","https://openalex.org/W2750184388","https://openalex.org/W4286250602","https://openalex.org/W7134885617","https://openalex.org/W4417192483"],"abstract_inverted_index":{"Abstract":[0],"Microbial":[1],"fermentations":[2],"emerge":[3],"from":[4,109,180],"the":[5,56,89,115,151,161,181],"collective":[6,97],"activity":[7],"of":[8,58,83,95,102,117,153,170],"interacting":[9],"species":[10],"whose":[11],"relative":[12],"abundances,":[13],"metabolic":[14,36,158,177],"functions,":[15],"and":[16,50,120,131,188],"environmental":[17,189],"constraints":[18],"continuously":[19],"change":[20],"over":[21],"time.":[22],"Water":[23],"kefir":[24,61,73,172],"provides":[25],"a":[26,59,80,92,107,123],"tractable":[27],"model":[28],"to":[29,54,122,156],"investigate":[30],"how":[31],"multispecies":[32],"communities":[33],"coordinate":[34],"their":[35],"activities":[37],"during":[38],"fermentation.":[39,103],"Here,":[40],"we":[41],"combined":[42],"time-resolved":[43],"community":[44,90],"profiling,":[45],"physicochemical":[46],"measurements,":[47],"metabolite":[48],"quantification,":[49],"controlled":[51],"co-culture":[52],"assays":[53,136],"characterize":[55],"dynamics":[57],"water":[60,72,171],"consortium":[62],"comprising":[63],"19":[64],"detected":[65],"microbial":[66,86,184],"species.":[67],"Our":[68],"results":[69,165],"reveal":[70],"that":[71,139],"fermentation":[74,173],"is":[75],"not":[76],"adequately":[77],"described":[78],"as":[79],"simple":[81],"succession":[82],"independently":[84],"acting":[85],"groups.":[87],"Instead,":[88],"undergoes":[91],"reproducible":[93],"reorganization":[94,178],"its":[96],"metabolism":[98],"around":[99],"20":[100],"h":[101],"This":[104],"transition":[105],"marks":[106],"shift":[108],"an":[110,167],"early":[111],"regime":[112,125],"characterized":[113],"by":[114,127],"accumulation":[116],"soluble":[118],"sugars":[119],"ethanol":[121],"later":[124],"dominated":[126],"enhanced":[128],"sugar":[129],"consumption":[130],"lactate":[132],"production.":[133],"Controlled":[134],"interaction":[135],"further":[137],"showed":[138],"bacterial":[140],"partners":[141],"can":[142],"alter":[143],"carbon-use":[144],"behaviour":[145],"in":[146,174],"Saccharomyces":[147],"cerevisiae":[148],",":[149],"highlighting":[150],"capacity":[152],"interspecies":[154],"interactions":[155],"reshape":[157],"phenotypes":[159],"within":[160],"consortium.":[162],"Together,":[163],"these":[164],"support":[166],"ecological":[168],"view":[169],"which":[175],"community-wide":[176],"emerges":[179],"interplay":[182],"between":[183],"interactions,":[185],"resource":[186],"availability,":[187],"change.":[190]},"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2026-10-13T00:00:00"}
