{"id":"https://openalex.org/W7221453097","doi":"https://doi.org/10.64898/2026.10.11.758349","title":"A miniaturized Arabidopsis thaliana - Botrytis cinerea seedling pathosystem and the GreenDayz workflow for longitudinal image-based phenotyping","display_name":"A miniaturized Arabidopsis thaliana - Botrytis cinerea seedling pathosystem and the GreenDayz workflow for longitudinal image-based phenotyping","publication_year":2026,"publication_date":"2026-10-17","ids":{"openalex":"https://openalex.org/W7221453097","doi":"https://doi.org/10.64898/2026.10.11.758349"},"language":"en","primary_location":{"id":"doi:10.64898/2026.10.11.758349","doi":"https://doi.org/10.64898/2026.10.11.758349","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.11.758349","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/17/2026.10.11.758349.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/17/2026.10.11.758349.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5158317345","display_name":"Ines Tguafaiti","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210129159","display_name":"Laboratoire de Microbiologie, Adaptation et Pathog\u00e9nie","ror":"https://ror.org/03p3f6k20","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210096427","https://openalex.org/I4210129159","https://openalex.org/I4210166400","https://openalex.org/I48430043","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Ines Tguafaiti","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152761844","display_name":"Christophe Bruel","orcid":"https://orcid.org/0000-0002-5140-7084","observed_orcids":["https://orcid.org/0000-0002-5140-7084"]},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210129159","display_name":"Laboratoire de Microbiologie, Adaptation et Pathog\u00e9nie","ror":"https://ror.org/03p3f6k20","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210096427","https://openalex.org/I4210129159","https://openalex.org/I4210166400","https://openalex.org/I48430043","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christophe Bruel","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France"],"raw_orcid":"https://orcid.org/0000-0002-5140-7084","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003055756","display_name":"Mathias Choquer","orcid":"https://orcid.org/0000-0002-3768-160X","observed_orcids":["https://orcid.org/0000-0002-3768-160X"]},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210129159","display_name":"Laboratoire de Microbiologie, Adaptation et Pathog\u00e9nie","ror":"https://ror.org/03p3f6k20","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210096427","https://openalex.org/I4210129159","https://openalex.org/I4210166400","https://openalex.org/I48430043","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Mathias Choquer","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France"],"raw_orcid":"https://orcid.org/0000-0002-3768-160X","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022553662","display_name":"Caroline Bournaud","orcid":"https://orcid.org/0000-0002-2980-1691","observed_orcids":["https://orcid.org/0000-0002-2980-1691"]},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210129159","display_name":"Laboratoire de Microbiologie, Adaptation et Pathog\u00e9nie","ror":"https://ror.org/03p3f6k20","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210096427","https://openalex.org/I4210129159","https://openalex.org/I4210166400","https://openalex.org/I48430043","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Caroline Bournaud","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France"],"raw_orcid":"https://orcid.org/0000-0002-2980-1691","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048185021","display_name":"Nathalie Poussereau","orcid":"https://orcid.org/0000-0001-8389-9485","observed_orcids":["https://orcid.org/0000-0001-8389-9485"]},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210129159","display_name":"Laboratoire de Microbiologie, Adaptation et Pathog\u00e9nie","ror":"https://ror.org/03p3f6k20","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210096427","https://openalex.org/I4210129159","https://openalex.org/I4210166400","https://openalex.org/I48430043","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nathalie Poussereau","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France"],"raw_orcid":"https://orcid.org/0000-0001-8389-9485","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084076703","display_name":"Fran\u00e7ois Gillet","orcid":"https://orcid.org/0000-0002-3334-1069","observed_orcids":["https://orcid.org/0000-0002-3334-1069","https://orcid.org/0000-0001-7453-488X"]},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Lyon 1 Universit\u00e9","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210129159","display_name":"Laboratoire de Microbiologie, Adaptation et Pathog\u00e9nie","ror":"https://ror.org/03p3f6k20","country_code":"FR","type":"facility","lineage":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I203339264","https://openalex.org/I4210096427","https://openalex.org/I4210129159","https://openalex.org/I4210166400","https://openalex.org/I48430043","https://openalex.org/I67348948"]},{"id":"https://openalex.org/I48430043","display_name":"Institut National des Sciences Appliqu\u00e9es de Lyon","ror":"https://ror.org/050jn9y42","country_code":"FR","type":"education","lineage":["https://openalex.org/I203339264","https://openalex.org/I48430043"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Fran\u00e7ois-Xavier Gillet","raw_affiliation_strings":["Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France"],"raw_orcid":"https://orcid.org/0000-0001-7453-488X","affiliations":[{"raw_affiliation_string":"Universit\u00e9 Lyon 1, CNRS, INSA, Bayer SAS, MAP, UMR5240, Lyon, France","institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5084076703"],"corresponding_institution_ids":["https://openalex.org/I100532134","https://openalex.org/I1294671590","https://openalex.org/I4210129159","https://openalex.org/I48430043"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.7318999767303467,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.7318999767303467,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.1386999934911728,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11900","display_name":"Fungal Plant Pathogen Control","score":0.034299999475479126,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.9760000109672546},{"id":"https://openalex.org/keywords/botrytis-cinerea","display_name":"Botrytis cinerea","score":1.0},{"id":"https://openalex.org/keywords/plant-pathogen-interaction","display_name":"plant-pathogen interaction","score":0.7850000262260437},{"id":"https://openalex.org/keywords/rgb-imaging","display_name":"RGB imaging","score":0.8569999933242798},{"id":"https://openalex.org/keywords/image-analysis-software","display_name":"image analysis software","score":0.7850000262260437},{"id":"https://openalex.org/keywords/non-destructive-phenotyping","display_name":"non-destructive phenotyping","score":0.6980000138282776},{"id":"https://openalex.org/keywords/host-developmental-stage","display_name":"host developmental stage","score":0.5529999732971191}],"concepts":[{"id":"https://openalex.org/C23209589","wikidata":"https://www.wikidata.org/wiki/Q3368724","display_name":"Pathosystem","level":3,"score":0.9355999827384949},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7311000227928162},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.6363000273704529},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5601000189781189},{"id":"https://openalex.org/C2775867217","wikidata":"https://www.wikidata.org/wiki/Q1135851","display_name":"Botrytis cinerea","level":2,"score":0.5175999999046326},{"id":"https://openalex.org/C2776096895","wikidata":"https://www.wikidata.org/wiki/Q1385709","display_name":"Seedling","level":2,"score":0.4560000002384186},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.42179998755455017},{"id":"https://openalex.org/C144027150","wikidata":"https://www.wikidata.org/wiki/Q48803","display_name":"Horticulture","level":1,"score":0.32089999318122864},{"id":"https://openalex.org/C2779491563","wikidata":"https://www.wikidata.org/wiki/Q157892","display_name":"Arabidopsis","level":4,"score":0.31139999628067017},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.29010000824928284},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.27300000190734863},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.26600000262260437}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.64898/2026.10.11.758349","doi":"https://doi.org/10.64898/2026.10.11.758349","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.11.758349","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/17/2026.10.11.758349.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"doi:10.5281/zenodo.23304500","doi":"https://doi.org/10.5281/zenodo.23304500","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23304500","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.5281/zenodo.23304501","doi":"https://doi.org/10.5281/zenodo.23304501","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23304501","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.64898/2026.10.11.758349","doi":"https://doi.org/10.64898/2026.10.11.758349","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.10.11.758349","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/17/2026.10.11.758349.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger","score":0.958299994468689}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7221453097.pdf","grobid_xml":"https://content.openalex.org/works/W7221453097.grobid-xml"},"referenced_works_count":9,"referenced_works":["https://openalex.org/W1930097109","https://openalex.org/W2116069931","https://openalex.org/W2171451182","https://openalex.org/W2425678763","https://openalex.org/W3120271720","https://openalex.org/W4224221864","https://openalex.org/W4284989772","https://openalex.org/W4392880053","https://openalex.org/W4412949582"],"related_works":["https://openalex.org/W4386036093","https://openalex.org/W3120271720","https://openalex.org/W7206866706","https://openalex.org/W4300534771","https://openalex.org/W4392880053","https://openalex.org/W4407099293","https://openalex.org/W3035800124","https://openalex.org/W4309919933","https://openalex.org/W2337351770","https://openalex.org/W4402922752"],"abstract_inverted_index":{"Abstract":[0],"Plant-pathogen":[1],"interactions":[2],"are":[3],"strongly":[4],"influenced":[5],"by":[6],"host":[7],"developmental":[8],"stage,":[9],"yet":[10],"many":[11],"Arabidopsis":[12],"thaliana-Botrytis":[13],"cinerea":[14,44],"assays":[15],"remain":[16],"centred":[17],"on":[18,24],"mature":[19],"rosette":[20],"leaves":[21],"and":[22,65,80,99,107,113],"rely":[23],"inoculum":[25],"loads":[26],"that":[27,93],"may":[28],"exceed":[29],"those":[30],"involved":[31],"in":[32,40,123],"a":[33,38,49,75,84],"primary":[34],"infection.":[35],"We":[36],"established":[37],"miniaturized":[39],"vitro":[41],"A.":[42],"thaliana-B.":[43],"seedling":[45,121],"pathosystem":[46,71,106],"initiated":[47],"with":[48,60,88,130],"very":[50],"low":[51],"conidial":[52],"dose":[53],"(nominally":[54],"\u223c25":[55],"conidia":[56],"per":[57],"plate)":[58],"compatible":[59],"both":[61],"destructive":[62],"molecular":[63,132],"sampling":[64],"repeated,":[66],"non-destructive":[67],"RGB":[68,96],"imaging.":[69],"The":[70],"was":[72],"coupled":[73],"to":[74,81],"low-cost":[76],"smartphone":[77],"photo":[78],"station":[79],"GreenDayZ":[82,108],"Phenotyping,":[83],"guided":[85],"image-analysis":[86],"application":[87],"an":[89,111],"intuitive":[90],"graphical":[91],"interface":[92],"standardizes":[94],"longitudinal":[95,117],"image":[97],"processing":[98],"extracts":[100],"quantitative":[101],"colour-based":[102],"phenotypes.":[103],"Together,":[104],"the":[105],"Phenotyping":[109],"provide":[110],"accessible":[112],"reproducible":[114],"framework":[115],"for":[116],"phenotyping":[118],"of":[119],"low-inoculum":[120],"infections,":[122],"which":[124],"image-derived":[125],"trajectories":[126],"can":[127],"be":[128],"aligned":[129],"independent":[131],"readouts.":[133]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2026-10-12T00:00:00"}