{"id":"https://openalex.org/W7220992012","doi":"https://doi.org/10.5281/zenodo.23246460","title":"Zero-shot benchmark code: histopathology foundation models in canine oncology (CONCH, Pathos-Gemma4) - MIDOG++","display_name":"Zero-shot benchmark code: histopathology foundation models in canine oncology (CONCH, Pathos-Gemma4) - MIDOG++","publication_year":2026,"publication_date":"2026-10-08","ids":{"openalex":"https://openalex.org/W7220992012","doi":"https://doi.org/10.5281/zenodo.23246460"},"language":null,"primary_location":{"id":"doi:10.5281/zenodo.23246460","doi":"https://doi.org/10.5281/zenodo.23246460","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23246460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"volume":null,"type":"software","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.23246460","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5018582730","display_name":"Arnulfo Villanueva-Castillo","orcid":"https://orcid.org/0000-0002-9430-1503","observed_orcids":["https://orcid.org/0000-0002-9430-1503"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Villanueva-Castillo, Arnulfo","raw_affiliation_strings":["BUAP"],"raw_orcid":"https://orcid.org/0000-0002-9430-1503","affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041282734","display_name":"Ruby Sandy Moreno-Mej\u00eda","orcid":"https://orcid.org/0009-0004-7888-9839","observed_orcids":["https://orcid.org/0009-0004-7888-9839"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Moreno-Mejia, Ruby Sandy","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5147333770","display_name":"Alexis Cruz-Espinosa","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Cruz-Espinosa, Alexis","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102893892","display_name":"Claudia Mancilla-Simbro","orcid":"https://orcid.org/0000-0003-3976-3550","observed_orcids":["https://orcid.org/0000-0003-3976-3550","https://orcid.org/0000-0003-2613-3453"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Mancilla-Simbro, Claudia","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5147372390","display_name":"Briseida L. Castro-Bautista","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Castro-Bautista, Briseida L.","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152381671","display_name":"Erick C. Fern\u00e1ndez-Meneses","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Fernandez-Meneses, Erick C.","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152351943","display_name":"Miguel \u00c1. Zambrano-Gonz\u00e1lez","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Zambrano-Gonzalez, Miguel A.","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075112012","display_name":"Fabiola Rodr\u00edguez-Andrade","orcid":"https://orcid.org/0009-0007-5567-452X","observed_orcids":["https://orcid.org/0009-0007-5567-452X"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Rodriguez-Andrade, Fabiola","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043518457","display_name":"Juan Ricardo Cruz-Avi\u00f1a","orcid":"https://orcid.org/0000-0002-0905-9370","observed_orcids":["https://orcid.org/0000-0002-0905-9370"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Cruz-Avina, Juan R.","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040873703","display_name":"Jes\u00fas Hinojosa-Moya","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Hinojosa-Moya, J. Jesus","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046466051","display_name":"Hermilo Lucio\u2010Castillo","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I65481309","display_name":"Autonomous University of Tamaulipas","ror":"https://ror.org/04hhneb29","country_code":"MX","type":"education","lineage":["https://openalex.org/I65481309"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Lucio-Castillo, Hermilo","raw_affiliation_strings":["UAT"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"UAT","institution_ids":["https://openalex.org/I65481309"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068496477","display_name":"C.F. Pastel\u00edn","orcid":"https://orcid.org/0000-0002-9501-2017","observed_orcids":["https://orcid.org/0000-0002-9501-2017"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Pastelin-Rojas, Cesar F.","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027480625","display_name":"Alberto Ram\u00edrez-Mata","orcid":"https://orcid.org/0000-0002-2119-2254","observed_orcids":["https://orcid.org/0000-0002-2119-2254"]},"institutions":[{"id":"https://openalex.org/I721619","display_name":"Benem\u00e9rita Universidad Aut\u00f3noma de Puebla","ror":"https://ror.org/03p2z7827","country_code":"MX","type":"education","lineage":["https://openalex.org/I721619"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Ramirez-Mata, Alberto","raw_affiliation_strings":["BUAP"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BUAP","institution_ids":["https://openalex.org/I721619"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10862","display_name":"AI in cancer detection","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11149","display_name":"Veterinary Oncology Research","score":0.007899999618530273,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12422","display_name":"Radiomics and Machine Learning in Medical Imaging","score":0.0003000000142492354,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/canine-oncology","display_name":"canine oncology","score":0.9240000247955322},{"id":"https://openalex.org/keywords/conch","display_name":"conch","score":0.675000011920929},{"id":"https://openalex.org/keywords/patch-embedding","display_name":"patch embedding","score":0.7009999752044678},{"id":"https://openalex.org/keywords/mast-cell-tumor","display_name":"mastocytoma","score":0.9319999814033508},{"id":"https://openalex.org/keywords/canine-lymphoma","display_name":"canine lymphoma","score":0.925000011920929},{"id":"https://openalex.org/keywords/head-to-head-comparison","display_name":"head-to-head comparison","score":0.7139999866485596}],"concepts":[{"id":"https://openalex.org/C544855455","wikidata":"https://www.wikidata.org/wiki/Q1070952","display_name":"Histopathology","level":2,"score":0.6269000172615051},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5992000102996826},{"id":"https://openalex.org/C19527891","wikidata":"https://www.wikidata.org/wiki/Q1120908","display_name":"Medical physics","level":1,"score":0.4973999857902527},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4611000120639801},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.42260000109672546},{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.40459999442100525},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.3402000069618225},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.3262999951839447},{"id":"https://openalex.org/C126838900","wikidata":"https://www.wikidata.org/wiki/Q77604","display_name":"Radiology","level":1,"score":0.32580000162124634},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.310699999332428},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28349998593330383},{"id":"https://openalex.org/C179518139","wikidata":"https://www.wikidata.org/wiki/Q5140297","display_name":"Coding (social sciences)","level":2,"score":0.27639999985694885}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.23246460","doi":"https://doi.org/10.5281/zenodo.23246460","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23246460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"},{"id":"doi:10.5281/zenodo.23246461","doi":"https://doi.org/10.5281/zenodo.23246461","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23246461","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Software"}],"best_oa_location":{"id":"doi:10.5281/zenodo.23246460","doi":"https://doi.org/10.5281/zenodo.23246460","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.23246460","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Software"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":1,"referenced_works":["https://openalex.org/W4385232268"],"related_works":[],"abstract_inverted_index":{"Evaluation":[0],"code":[1],"for":[2],"the":[3,14,42],"zero-shot":[4],"benchmark":[5],"of":[6],"histopathology":[7],"foundation":[8],"models":[9],"(CONCH":[10],"and":[11,34],"Pathos-Gemma4)":[12],"on":[13],"MIDOG++":[15],"canine":[16],"subset":[17],"(148":[18],"slides;":[19],"mast":[20],"cell":[21],"tumour,":[22],"lymphoma,":[23],"pulmonary":[24],"carcinoma).":[25],"Includes":[26],"CONCH":[27],"patch-embedding":[28],"benchmark,":[29],"Pathos-Gemma4":[30],"llama.cpp":[31],"inference":[32],"scripts,":[33],"head-to-head":[35],"comparison":[36],"scripts":[37],"with":[38],"result":[39],"files.":[40],"Accompanies":[41],"manuscript":[43],"submitted":[44],"to":[45],"Medical":[46],"Image":[47],"Analysis.":[48]},"counts_by_year":[],"updated_date":"2026-10-12T09:40:04.860316","created_date":"2026-10-09T00:00:00"}
