{"id":"https://openalex.org/W7220862261","doi":"https://doi.org/10.3389/fbinf.2026.1910035","title":"OBLX: building standardized reference resources for reproducible bioinformatics data analysis","display_name":"OBLX: building standardized reference resources for reproducible bioinformatics data analysis","publication_year":2026,"publication_date":"2026-10-07","ids":{"openalex":"https://openalex.org/W7220862261","doi":"https://doi.org/10.3389/fbinf.2026.1910035","pmid":"https://pubmed.ncbi.nlm.nih.gov/42909077","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13683796"},"language":"en","primary_location":{"id":"doi:10.3389/fbinf.2026.1910035","doi":"https://doi.org/10.3389/fbinf.2026.1910035","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1910035","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1910035/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1910035/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133315832","display_name":"Luis Kress","orcid":"https://orcid.org/0009-0000-6440-3114","observed_orcids":["https://orcid.org/0009-0000-6440-3114"]},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luis Kress","raw_affiliation_strings":["Faculty of Biology, Johannes Gutenberg University Mainz","TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I197323543"]},{"raw_affiliation_string":"TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076607948","display_name":"Johannes Hausmann","orcid":"https://orcid.org/0000-0002-5217-2301","observed_orcids":["https://orcid.org/0000-0002-5217-2301","https://orcid.org/0009-0004-5021-555X"]},"institutions":[{"id":"https://openalex.org/I197323543","display_name":"Johannes Gutenberg University Mainz","ror":"https://ror.org/023b0x485","country_code":"DE","type":"education","lineage":["https://openalex.org/I197323543"]},{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johannes Hausmann","raw_affiliation_strings":["Faculty of Biology, Johannes Gutenberg University Mainz","TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Biology, Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I197323543"]},{"raw_affiliation_string":"TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074190665","display_name":"Jonas Freimuth","orcid":"https://orcid.org/0000-0002-9259-3696","observed_orcids":["https://orcid.org/0000-0002-9259-3696"]},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Freimuth","raw_affiliation_strings":["TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016293754","display_name":"Barbara Schr\u00f6rs","orcid":"https://orcid.org/0000-0001-9758-250X","observed_orcids":["https://orcid.org/0000-0001-9758-250X"]},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Barbara Schr\u00f6rs","raw_affiliation_strings":["TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029343804","display_name":"Franziska Lang","orcid":"https://orcid.org/0000-0002-0794-7446","observed_orcids":["https://orcid.org/0000-0002-0794-7446"]},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Franziska Lang","raw_affiliation_strings":["TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066553079","display_name":"Jonas Ibn-Salem","orcid":"https://orcid.org/0000-0001-9886-113X","observed_orcids":["https://orcid.org/0000-0001-9886-113X"]},"institutions":[{"id":"https://openalex.org/I4210094062","display_name":"University Medical Center of the Johannes Gutenberg University Mainz","ror":"https://ror.org/00q1fsf04","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210094062"]},{"id":"https://openalex.org/I4210149035","display_name":"Translationale Onkologie an der Universit\u00e4tsmedizin der Johannes Gutenberg-Universit\u00e4t Mainz","ror":"https://ror.org/04sz26p89","country_code":"DE","type":"nonprofit","lineage":["https://openalex.org/I4210149035"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Ibn-Salem","raw_affiliation_strings":["TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"TRON Translational Oncology at the University Medical Center of the Johannes Gutenberg University Mainz","institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5029343804"],"corresponding_institution_ids":["https://openalex.org/I4210094062","https://openalex.org/I4210149035"],"apc_list":{"value":2550,"currency":"CHF","value_usd":3077},"apc_paid":{"value":2550,"currency":"CHF","value_usd":3077},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.62684383,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"6","issue":null,"first_page":"1910035","last_page":"1910035"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8291000127792358,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.8291000127792358,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.13539999723434448,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T13937","display_name":"Genetics, Bioinformatics, and Biomedical Research","score":0.019600000232458115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/reference-genome","display_name":"reference genome","score":0.5090000033378601},{"id":"https://openalex.org/keywords/next-generation-sequencing","display_name":"next-generation sequencing","score":0.7020000219345093},{"id":"https://openalex.org/keywords/reproducible-bioinformatics-pipeline","display_name":"reproducible bioinformatics pipeline","score":0.7099999785423279},{"id":"https://openalex.org/keywords/cancer-genomics","display_name":"cancer genomics","score":0.9449999928474426},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.7110000252723694},{"id":"https://openalex.org/keywords/transcriptome","display_name":"transcriptome","score":0.4790000021457672},{"id":"https://openalex.org/keywords/interoperability","display_name":"interoperability","score":0.7379999756813049}],"concepts":[{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6775000095367432},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6650000214576721},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.5690000057220459},{"id":"https://openalex.org/C197947376","wikidata":"https://www.wikidata.org/wiki/Q5155608","display_name":"Comparability","level":2,"score":0.5516999959945679},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5288000106811523},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4740999937057495},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.44769999384880066},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4156999886035919},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.40959998965263367},{"id":"https://openalex.org/C55282118","wikidata":"https://www.wikidata.org/wiki/Q252683","display_name":"Snapshot (computer storage)","level":2,"score":0.40630000829696655},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4000000059604645},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.39800000190734863},{"id":"https://openalex.org/C188087704","wikidata":"https://www.wikidata.org/wiki/Q369577","display_name":"Standardization","level":2,"score":0.374099999666214},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34869998693466187},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.33059999346733093},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3156000077724457},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29490000009536743},{"id":"https://openalex.org/C138958017","wikidata":"https://www.wikidata.org/wiki/Q190087","display_name":"Data type","level":2,"score":0.28859999775886536},{"id":"https://openalex.org/C60478076","wikidata":"https://www.wikidata.org/wiki/Q3036835","display_name":"Reference data","level":2,"score":0.2863999903202057},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.27950000762939453},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2793000042438507},{"id":"https://openalex.org/C175309249","wikidata":"https://www.wikidata.org/wiki/Q725864","display_name":"Pipeline transport","level":2,"score":0.2628999948501587},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.26249998807907104}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fbinf.2026.1910035","doi":"https://doi.org/10.3389/fbinf.2026.1910035","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1910035","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1910035/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13683796","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13683796/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13683796/pdf/fbinf-06-1910035.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Front Bioinform","raw_type":"Text"},{"id":"pmid:42909077","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42909077","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:07af1989eba4440fa1487f60e89df2c7","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/07af1989eba4440fa1487f60e89df2c7","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Bioinformatics, Vol 6 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fbinf.2026.1910035","doi":"https://doi.org/10.3389/fbinf.2026.1910035","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fbinf.2026.1910035","pdf_url":"https://www.frontiersin.org/journals/bioinformatics/articles/10.3389/fbinf.2026.1910035/pdf","source":{"id":"https://openalex.org/S4210219554","display_name":"Frontiers in Bioinformatics","issn_l":"2673-7647","issn":["2673-7647"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1","ki-jl-1","norway-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7220862261.pdf","grobid_xml":"https://content.openalex.org/works/W7220862261.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1585895556","https://openalex.org/W2005501593","https://openalex.org/W2102619694","https://openalex.org/W2103441770","https://openalex.org/W2106578986","https://openalex.org/W2129785061","https://openalex.org/W2131478115","https://openalex.org/W2158485828","https://openalex.org/W2169456326","https://openalex.org/W2170551349","https://openalex.org/W2323326409","https://openalex.org/W2521492299","https://openalex.org/W2592811885","https://openalex.org/W2605897695","https://openalex.org/W2613409207","https://openalex.org/W2765745983","https://openalex.org/W2953622121","https://openalex.org/W2964849163","https://openalex.org/W2980759299","https://openalex.org/W3004050413","https://openalex.org/W3006500278","https://openalex.org/W3006653136","https://openalex.org/W3022572641","https://openalex.org/W3029661147","https://openalex.org/W3122109253","https://openalex.org/W4389367121","https://openalex.org/W4395468216","https://openalex.org/W4399117959","https://openalex.org/W4403288742","https://openalex.org/W4404225840","https://openalex.org/W4404282917","https://openalex.org/W4404458588","https://openalex.org/W4404535307","https://openalex.org/W4405231264","https://openalex.org/W4416308731"],"related_works":["https://openalex.org/W2748728020","https://openalex.org/W2919294421","https://openalex.org/W2415325177","https://openalex.org/W6958752236","https://openalex.org/W7167279885","https://openalex.org/W6893812173","https://openalex.org/W2124796057","https://openalex.org/W4392653632","https://openalex.org/W7123374230","https://openalex.org/W4389297973"],"abstract_inverted_index":{"Reproducible":[0],"next-generation":[1],"sequencing":[2],"(NGS)":[3],"analyses":[4],"in":[5],"cancer":[6,67],"research":[7],"require":[8],"standardized":[9,96],"reference":[10,98,107],"genome":[11,104],"resources,":[12,155],"yet":[13],"these":[14,52,122],"resources":[15,53,115,123],"are":[16,54],"often":[17],"assembled":[18],"inconsistently,":[19],"limiting":[20],"the":[21,43,76,101],"comparability":[22],"of":[23,35,42,51],"results":[24],"across":[25],"pipelines":[26],"and":[27,46,65,83,91,105,112,150,157,164],"studies.":[28],"While":[29],"existing":[30],"solutions":[31],"support":[32],"a":[33,87],"range":[34],"workflows,":[36],"they":[37],"provide":[38],"only":[39],"limited":[40],"documentation":[41],"included":[44],"data":[45,168],"processing":[47],"steps.":[48],"Furthermore,":[49],"some":[50],"not":[55],"version-matched":[56],"or":[57],"outdated,":[58],"making":[59],"them":[60],"less":[61],"suitable":[62],"for":[63,79,94,166],"integrated":[64],"reproducible":[66,92],"genomics":[68],"analyses.":[69,169],"To":[70],"address":[71],"this":[72],"gap,":[73],"we":[74],"developed":[75],"Omics":[77],"builder":[78],"Bioinformatics":[80],"resource":[81],"Libraries":[82],"indeXes":[84],"(OBLX,":[85],"https://github.com/TRON-Bioinformatics/oblx/),":[86],"fully":[88],"documented,":[89],"configurable":[90],"pipeline":[93,102],"building":[95,134],"NGS":[97,130,167],"libraries.":[99],"First,":[100],"retrieves":[103],"transcriptome":[106],"sequences,":[108],"their":[109],"corresponding":[110],"annotations,":[111],"population":[113],"variant":[114],"from":[116],"public":[117],"sources.":[118],"Subsequently,":[119],"OBLX":[120,140,160],"processes":[121],"to":[124],"ensure":[125],"compatibility":[126],"with":[127],"commonly":[128],"used":[129,146],"tools,":[131],"which":[132],"includes":[133],"several":[135],"bioinformatic":[136],"indices.":[137],"The":[138],"resulting":[139],"library":[141],"may":[142],"then":[143],"be":[144],"directly":[145],"by":[147],"downstream":[148],"tools":[149],"pipelines.":[151],"By":[152],"documenting":[153],"all":[154],"operations,":[156],"intended":[158],"use-cases,":[159],"improves":[161],"transparency,":[162],"reproducibility,":[163],"interoperability":[165]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2026-10-08T00:00:00"}
