{"id":"https://openalex.org/W7220837016","doi":"https://doi.org/10.64898/2026.09.30.755630","title":"Chromosome-scale genome assembly of the North American invasive Asteraceae, Tanacetum vulgare (common tansy)","display_name":"Chromosome-scale genome assembly of the North American invasive Asteraceae, Tanacetum vulgare (common tansy)","publication_year":2026,"publication_date":"2026-10-06","ids":{"openalex":"https://openalex.org/W7220837016","doi":"https://doi.org/10.64898/2026.09.30.755630"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.30.755630","doi":"https://doi.org/10.64898/2026.09.30.755630","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.30.755630","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/06/2026.09.30.755630.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/06/2026.09.30.755630.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5157840860","display_name":"Dimiru Tadesse","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dimiru Tadesse","raw_affiliation_strings":["Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5157832345","display_name":"Adrian Platts","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adrian E. Platts","raw_affiliation_strings":["Department of Horticulture, Michigan State University, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093098872","display_name":"Lori Croghan","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lori Croghan","raw_affiliation_strings":["Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5157832374","display_name":"Alan Smith","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alan G. Smith","raw_affiliation_strings":["Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067774648","display_name":"Neil O. Anderson","orcid":"https://orcid.org/0000-0001-9794-0397","observed_orcids":["https://orcid.org/0000-0001-9794-0397"]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Neil O. Anderson","raw_affiliation_strings":["Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152960552","display_name":"Roger Becker","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I130238516","display_name":"University of Minnesota","ror":"https://ror.org/017zqws13","country_code":"US","type":"education","lineage":["https://openalex.org/I130238516"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Roger L. Becker","raw_affiliation_strings":["Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticultural Science, University of Minnesota, St. Paul, MN, USA","institution_ids":["https://openalex.org/I130238516"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001730410","display_name":"Patrick P. Edger","orcid":"https://orcid.org/0000-0001-6836-3041","observed_orcids":["https://orcid.org/0000-0001-6836-3041"]},"institutions":[{"id":"https://openalex.org/I87216513","display_name":"Michigan State University","ror":"https://ror.org/05hs6h993","country_code":"US","type":"education","lineage":["https://openalex.org/I87216513"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Patrick P. Edger","raw_affiliation_strings":["Department of Horticulture, Michigan State University, East Lansing, MI, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Horticulture, Michigan State University, East Lansing, MI, USA","institution_ids":["https://openalex.org/I87216513"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5152879910","display_name":"Matthew Tancos","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1312222531","display_name":"Agricultural Research Service","ror":"https://ror.org/02d2m2044","country_code":"US","type":"government","lineage":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]},{"id":"https://openalex.org/I1336096307","display_name":"United States Department of Agriculture","ror":"https://ror.org/01na82s61","country_code":"US","type":"government","lineage":["https://openalex.org/I1336096307"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Matthew A. Tancos","raw_affiliation_strings":["Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Foreign Disease-Weed Science Research Unit, United States Department of Agriculture, Agricultural Research Service, Fort Detrick, MD, USA","institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5152879910"],"corresponding_institution_ids":["https://openalex.org/I1312222531","https://openalex.org/I1336096307"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.5746999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.5746999979019165,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.3878999948501587,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tanacetum-vulgare","display_name":"Tanacetum vulgare","score":0.9990000128746033},{"id":"https://openalex.org/keywords/invasive-weeds","display_name":"invasive weeds","score":0.6579999923706055},{"id":"https://openalex.org/keywords/asteraceae","display_name":"Asteraceae","score":0.8119999766349792},{"id":"https://openalex.org/keywords/genome-assembly","display_name":"genome assembly","score":0.7300000190734863},{"id":"https://openalex.org/keywords/chromosome-scale-genome","display_name":"chromosome-scale genome","score":0.5419999957084656},{"id":"https://openalex.org/keywords/pseudomolecules","display_name":"pseudomolecules","score":0.7829999923706055},{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.7440000176429749},{"id":"https://openalex.org/keywords/mitochondrial-genome","display_name":"mitochondrial genome","score":1.0},{"id":"https://openalex.org/keywords/genome-annotation","display_name":"genome annotation","score":0.7459999918937683},{"id":"https://openalex.org/keywords/weed-control","display_name":"weed control","score":0.46799999475479126},{"id":"https://openalex.org/keywords/biological-control","display_name":"biological control","score":0.7369999885559082}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8194000124931335},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7768999934196472},{"id":"https://openalex.org/C2775891814","wikidata":"https://www.wikidata.org/wiki/Q101879","display_name":"Weed","level":2,"score":0.4390000104904175},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.42250001430511475},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4189999997615814},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.38830000162124634},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.367900013923645},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.3490999937057495},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.3474000096321106},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.3400000035762787},{"id":"https://openalex.org/C121364248","wikidata":"https://www.wikidata.org/wiki/Q7067310","display_name":"Noxious weed","level":3,"score":0.33869999647140503},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.326200008392334},{"id":"https://openalex.org/C61271108","wikidata":"https://www.wikidata.org/wiki/Q3180866","display_name":"Genome size","level":4,"score":0.32600000500679016},{"id":"https://openalex.org/C2780618852","wikidata":"https://www.wikidata.org/wiki/Q79932","display_name":"Pollen","level":2,"score":0.3160000145435333},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3073999881744385},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.29899999499320984},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.28850001096725464},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.28369998931884766},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.2800000011920929},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2784999907016754},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.27720001339912415},{"id":"https://openalex.org/C44671064","wikidata":"https://www.wikidata.org/wiki/Q189800","display_name":"Gene pool","level":4,"score":0.2694999873638153},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.2655999958515167},{"id":"https://openalex.org/C136020623","wikidata":"https://www.wikidata.org/wiki/Q183368","display_name":"Invasive species","level":2,"score":0.2630999982357025}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.30.755630","doi":"https://doi.org/10.64898/2026.09.30.755630","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.30.755630","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/06/2026.09.30.755630.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.30.755630","doi":"https://doi.org/10.64898/2026.09.30.755630","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.30.755630","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/06/2026.09.30.755630.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"public-domain","license_id":"https://openalex.org/licenses/public-domain","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7220837016.pdf","grobid_xml":"https://content.openalex.org/works/W7220837016.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W1626454729","https://openalex.org/W1696199194","https://openalex.org/W2045204781","https://openalex.org/W2050736435","https://openalex.org/W2101291993","https://openalex.org/W2102128253","https://openalex.org/W2104005232","https://openalex.org/W2105631657","https://openalex.org/W2113267458","https://openalex.org/W2138122982","https://openalex.org/W2148853951","https://openalex.org/W2168292723","https://openalex.org/W3047598142","https://openalex.org/W3085758516","https://openalex.org/W3143063265","https://openalex.org/W3144689495","https://openalex.org/W4311928790","https://openalex.org/W4385881583","https://openalex.org/W4387811127","https://openalex.org/W4391379030","https://openalex.org/W4404328264","https://openalex.org/W4415649299","https://openalex.org/W7205000120"],"related_works":["https://openalex.org/W7205000120","https://openalex.org/W6941152918","https://openalex.org/W2181246684","https://openalex.org/W2083499444","https://openalex.org/W3202002707","https://openalex.org/W4409148583","https://openalex.org/W4401656904","https://openalex.org/W4360997877","https://openalex.org/W4220943982","https://openalex.org/W4404730142"],"abstract_inverted_index":{"Abstract":[0],"Common":[1],"tansy":[2],"(":[3],"Tanacetum":[4],"vulgare":[5,36,84,148],"),":[6],"a":[7,27,102,109,129,151,156],"significant":[8],"agricultural":[9],"invasive":[10,80,145],"species,":[11],"threatens":[12],"forage":[13],"productivity,":[14],"livestock":[15],"carrying":[16],"capacity,":[17],"and":[18,53,67,90,108,120,171],"plant":[19,57,166],"biodiversity":[20],"across":[21],"North":[22,81,143],"American":[23,82,144],"agroecosystems.":[24],"Despite":[25],"being":[26],"close":[28],"relative":[29],"to":[30,45],"the":[31,46,54,65,70,118,163,172],"ornamental":[32],"Asteraceae":[33],"Chrysanthemum,":[34],"T.":[35,83,147],"genomic":[37],"studies":[38],"are":[39],"severely":[40],"lacking,":[41],"but":[42],"remain":[43],"critical":[44,161],"development":[47,174],"of":[48,56,69,78,105,112,165,175],"novel":[49,176],"weed":[50,179],"management":[51,180],"tools":[52],"investigation":[55,164],"invasion":[58,167],"evolution.":[59],"In":[60,115],"this":[61],"study,":[62],"we":[63],"performed":[64],"assembly":[66],"annotation":[68],"diploid":[71],"genome":[72,97,122,132,169],"(2":[73],"n":[74],"=2":[75],"x":[76],"=18)":[77],"an":[79],"genotype":[85],"using":[86],"long-read":[87],"PacBio":[88],"HiFi":[89],"Iso-Seq":[91],"sequencing":[92],"technology.":[93],"The":[94],"assembled":[95,154],"haplotype":[96],"comprised":[98],"9":[99],"pseudomolecules":[100],"with":[101,134],"total":[103],"size":[104],"\u223c4.8":[106],"Gb":[107],"scaffold":[110],"N50":[111],"546":[113],"Mb.":[114],"addition,":[116],"both":[117],"plastid":[119],"mitochondrial":[121],"sequences":[123],"were":[124],"assembled.":[125],"BUSCO":[126],"analysis":[127],"revealed":[128],"high":[130],"overall":[131],"completeness":[133],"69,343":[135],"predicted":[136],"protein-coding":[137],"genes":[138],"(AED<0.6:":[139],"98%).":[140],"A":[141],"high-quality":[142],"reference":[146],"genome,":[149],"complementing":[150],"recent":[152],"one":[153],"for":[155,162],"native":[157],"European":[158],"accession,":[159],"is":[160],"biology,":[168],"evolution,":[170],"future":[173],"genetic":[177],"biocontrol":[178],"technologies.":[181]},"counts_by_year":[],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2026-10-08T00:00:00"}
