{"id":"https://openalex.org/W7220370703","doi":"https://doi.org/10.3389/fpls.2026.1967948","title":"Comparative mitogenomics of Roscoea alpina and R. purpurea from contrasting elevations reveals mitochondrial genomic differentiation","display_name":"Comparative mitogenomics of Roscoea alpina and R. purpurea from contrasting elevations reveals mitochondrial genomic differentiation","publication_year":2026,"publication_date":"2026-10-05","ids":{"openalex":"https://openalex.org/W7220370703","doi":"https://doi.org/10.3389/fpls.2026.1967948","pmid":"https://pubmed.ncbi.nlm.nih.gov/42898477","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13677838"},"language":"en","primary_location":{"id":"doi:10.3389/fpls.2026.1967948","doi":"https://doi.org/10.3389/fpls.2026.1967948","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fpls.2026.1967948","pdf_url":"https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2026.1967948/pdf","source":{"id":"https://openalex.org/S2493613807","display_name":"Frontiers in Plant Science","issn_l":"1664-462X","issn":["1664-462X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Plant Science","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2026.1967948/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5157435526","display_name":"Ya-Li Wang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ya-Li Wang","raw_affiliation_strings":["Institute of International Rivers and Eco-Security, Yunnan University","State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Yunnan Key Laboratory of Biological Adaptation, Conservation and Utilization, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of International Rivers and Eco-Security, Yunnan University","institution_ids":["https://openalex.org/I189210763"]},{"raw_affiliation_string":"State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Yunnan Key Laboratory of Biological Adaptation, Conservation and Utilization, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University","institution_ids":["https://openalex.org/I189210763"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5040117665","display_name":"Zhao Jian-li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I189210763","display_name":"Yunnan University","ror":"https://ror.org/0040axw97","country_code":"CN","type":"education","lineage":["https://openalex.org/I189210763"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Jian-Li Zhao","raw_affiliation_strings":["State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Yunnan Key Laboratory of Biological Adaptation, Conservation and Utilization, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory of Vegetation Structure, Function and Construction (VegLab), Yunnan Key Laboratory of Biological Adaptation, Conservation and Utilization, and Institute of Biodiversity, School of Ecology and Environmental Science, Yunnan University","institution_ids":["https://openalex.org/I189210763"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5040117665"],"corresponding_institution_ids":["https://openalex.org/I189210763"],"apc_list":{"value":3150,"currency":"CHF","value_usd":3801},"apc_paid":{"value":3150,"currency":"CHF","value_usd":3801},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.61787428,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"17","issue":null,"first_page":"1967948","last_page":"1967948"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6923999786376953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6923999786376953,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.2533999979496002,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10301","display_name":"Mitochondrial Function and Pathology","score":0.01510000042617321,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/roscoea-purpurea","display_name":"Roscoea purpurea","score":1.0},{"id":"https://openalex.org/keywords/plant-mitochondrial-genome","display_name":"plant mitochondrial genome","score":0.8169999718666077},{"id":"https://openalex.org/keywords/comparative-mitogenomics","display_name":"comparative mitogenomics","score":0.8479999899864197},{"id":"https://openalex.org/keywords/high-altitude-adaptation","display_name":"high-altitude adaptation","score":0.7960000038146973},{"id":"https://openalex.org/keywords/gene-copy-number-variation","display_name":"gene copy number variation","score":0.6970000267028809},{"id":"https://openalex.org/keywords/codon-usage","display_name":"codon usage","score":0.8489999771118164},{"id":"https://openalex.org/keywords/rna-editing","display_name":"RNA editing","score":0.9440000057220459},{"id":"https://openalex.org/keywords/nad4","display_name":"nad4","score":0.6069999933242798},{"id":"https://openalex.org/keywords/rps3","display_name":"ribosomal protein S3","score":0.9909999966621399},{"id":"https://openalex.org/keywords/mitochondrial-complex-i","display_name":"mitochondrial complex I","score":0.7059999704360962},{"id":"https://openalex.org/keywords/mitochondrial-translation","display_name":"mitochondrial translation","score":0.8299999833106995},{"id":"https://openalex.org/keywords/elevation-gradient","display_name":"elevation gradient","score":0.3569999933242798}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9348000288009644},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.7232999801635742},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.6751000285148621},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.6291000247001648},{"id":"https://openalex.org/C149904235","wikidata":"https://www.wikidata.org/wiki/Q7049620","display_name":"Nonsynonymous substitution","level":4,"score":0.5860000252723694},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5527999997138977},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5508000254631042},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.4521999955177307},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.4068000018596649},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.38850000500679016},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.3582000136375427},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.3472000062465668},{"id":"https://openalex.org/C166393388","wikidata":"https://www.wikidata.org/wiki/Q856529","display_name":"Molecular evolution","level":4,"score":0.31349998712539673},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.303600013256073},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.28459998965263367},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.2614000141620636},{"id":"https://openalex.org/C61271108","wikidata":"https://www.wikidata.org/wiki/Q3180866","display_name":"Genome size","level":4,"score":0.2614000141620636},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.258899986743927},{"id":"https://openalex.org/C28859421","wikidata":"https://www.wikidata.org/wiki/Q39572","display_name":"Mitochondrion","level":2,"score":0.2556999921798706}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.3389/fpls.2026.1967948","doi":"https://doi.org/10.3389/fpls.2026.1967948","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fpls.2026.1967948","pdf_url":"https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2026.1967948/pdf","source":{"id":"https://openalex.org/S2493613807","display_name":"Frontiers in Plant Science","issn_l":"1664-462X","issn":["1664-462X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Plant Science","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13677838","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13677838/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13677838/pdf/fpls-17-1967948.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Front Plant Sci","raw_type":"Text"},{"id":"pmid:42898477","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42898477","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in plant science","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:64bdff1493034c09bd9b376b5676d15d","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/64bdff1493034c09bd9b376b5676d15d","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Frontiers in Plant Science, Vol 17 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.3389/fpls.2026.1967948","doi":"https://doi.org/10.3389/fpls.2026.1967948","is_oa":true,"landing_page_url":"https://doi.org/10.3389/fpls.2026.1967948","pdf_url":"https://www.frontiersin.org/journals/plant-science/articles/10.3389/fpls.2026.1967948/pdf","source":{"id":"https://openalex.org/S2493613807","display_name":"Frontiers in Plant Science","issn_l":"1664-462X","issn":["1664-462X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","norway-2","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320527","host_organization_name":"Frontiers Media","host_organization_lineage":["https://openalex.org/P4310320527"],"host_organization_lineage_names":["Frontiers Media"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Frontiers in Plant Science","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G5994913776","display_name":null,"funder_award_id":"42171057","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7220370703.pdf","grobid_xml":"https://content.openalex.org/works/W7220370703.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1931712295","https://openalex.org/W2029702158","https://openalex.org/W2035933706","https://openalex.org/W2047695085","https://openalex.org/W2066553763","https://openalex.org/W2108234281","https://openalex.org/W2110335151","https://openalex.org/W2112814753","https://openalex.org/W2112960619","https://openalex.org/W2149693007","https://openalex.org/W2151674016","https://openalex.org/W2153325555","https://openalex.org/W2160914555","https://openalex.org/W2414636283","https://openalex.org/W2541762931","https://openalex.org/W2554096736","https://openalex.org/W2584159992","https://openalex.org/W2603830010","https://openalex.org/W2789843538","https://openalex.org/W2924822346","https://openalex.org/W2970442701","https://openalex.org/W3130974608","https://openalex.org/W3184920348","https://openalex.org/W3194879197","https://openalex.org/W4309457432","https://openalex.org/W4309493889","https://openalex.org/W4316465932","https://openalex.org/W4318184028","https://openalex.org/W4390889225","https://openalex.org/W4391212304","https://openalex.org/W4391822389","https://openalex.org/W4394624401","https://openalex.org/W4401403837","https://openalex.org/W4403447027","https://openalex.org/W4404206001","https://openalex.org/W4404724114","https://openalex.org/W4406100742","https://openalex.org/W4406253827","https://openalex.org/W4406253897","https://openalex.org/W4412710980","https://openalex.org/W4412736827","https://openalex.org/W4413026877","https://openalex.org/W4413051233","https://openalex.org/W4414483386","https://openalex.org/W4415216021","https://openalex.org/W4417281556","https://openalex.org/W7133304405","https://openalex.org/W7134276482","https://openalex.org/W7154746424"],"related_works":["https://openalex.org/W4414598075","https://openalex.org/W4404129012","https://openalex.org/W7196944405","https://openalex.org/W4391822389","https://openalex.org/W4411459699","https://openalex.org/W2889161751","https://openalex.org/W7128786033","https://openalex.org/W7134276482","https://openalex.org/W7127408525","https://openalex.org/W7117700299"],"abstract_inverted_index":{"Plant":[0],"mitochondrial":[1,28,43,59,162,170,201],"genomes":[2,44],"are":[3],"structurally":[4],"dynamic":[5],"and":[6,11,40,51,77,98,131,148,161,185,204],"contribute":[7],"to":[8,206,218],"energy":[9],"metabolism":[10],"stress":[12],"responses.":[13],"Comparative":[14],"mitogenomic":[15],"analyses":[16],"of":[17,45,80,176,222],"closely":[18],"related":[19],"species":[20,48,54,89],"occupying":[21],"contrasting":[22],"elevations":[23],"can":[24],"provide":[25],"insights":[26],"into":[27,157],"genomic":[29,202,213],"differentiation":[30,168],"across":[31],"elevational":[32],"environments.":[33,208],"Using":[34],"PacBio":[35],"HiFi":[36],"reads,":[37],"we":[38],"assembled":[39],"compared":[41],"the":[42,46,52,87,139,180,186,192,219],"higher-altitude":[47],"R.":[49,55,66,119,223],"alpina":[50,67,120,224],"lower-altitude":[53],"purpurea":[56],".":[57,121],"Both":[58,179],"genome":[60,171],"assemblies":[61],"yielded":[62],"graph-like":[63],"structures,":[64],"with":[65,143],"exhibiting":[68],"a":[69,197,226],"more":[70,74],"complex":[71,159],"assembly-graph":[72],"topology,":[73],"dispersed":[75],"repeats,":[76],"extensive":[78],"evidence":[79],"dispersed-repeat-mediated":[81],"recombination.":[82],"Despite":[83],"these":[84,212],"structural":[85],"differences,":[86],"two":[88,135,140],"retained":[90],"broadly":[91],"similar":[92],"core":[93],"gene":[94,183],"complements,":[95],"codon-usage":[96],"patterns,":[97],"predicted":[99],"RNA-editing":[100],"profiles.":[101],"Among":[102],"genes":[103,125],"represented":[104],"by":[105],"multiple":[106],"annotated":[107,115,145,156],"copies":[108],"in":[109,118,169,182,225],"both":[110,155],"species,":[111],"12":[112],"had":[113],"higher":[114,144],"copy":[116,146],"numbers":[117,147],"Most":[122],"shared":[123],"protein-coding":[124],"were":[126,154],"highly":[127],"conserved,":[128],"whereas":[129],"nad4":[130],"rps3":[132],"each":[133],"contained":[134],"nonsynonymous":[136],"substitutions":[137],"between":[138,200],"species.":[141],"Genes":[142],"those":[149],"showing":[150],"limited":[151,187],"sequence":[152,188],"divergence":[153,189],"respiratory":[158],"I":[160],"translation.":[163],"These":[164],"results":[165],"reveal":[166],"pronounced":[167],"architecture":[172],"alongside":[173],"strong":[174],"conservation":[175],"coding":[177],"characteristics.":[178],"differences":[181],"representation":[184],"converge":[190],"on":[191],"same":[193],"functional":[194],"processes,":[195],"suggesting":[196],"potential":[198],"link":[199],"changes":[203],"adaptation":[205],"high-altitude":[207,227],"We":[209],"hypothesize":[210],"that":[211],"features":[214],"may":[215],"be":[216],"relevant":[217],"physiological":[220],"performance":[221],"environment.":[228]},"counts_by_year":[],"updated_date":"2026-10-29T09:56:32.521200","created_date":"2026-10-06T00:00:00"}