{"id":"https://openalex.org/W7219685155","doi":"https://doi.org/10.64898/2026.09.29.754965","title":"Adaptive introgression in subdivided populations leaves distinct genomic footprints under global and local selection: a case study in Ciona intestinalis","display_name":"Adaptive introgression in subdivided populations leaves distinct genomic footprints under global and local selection: a case study in Ciona intestinalis","publication_year":2026,"publication_date":"2026-10-04","ids":{"openalex":"https://openalex.org/W7219685155","doi":"https://doi.org/10.64898/2026.09.29.754965"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.29.754965","doi":"https://doi.org/10.64898/2026.09.29.754965","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.29.754965","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/04/2026.09.29.754965.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/04/2026.09.29.754965.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Manon Le Goff","orcid":"https://orcid.org/0009-0006-5596-5709","observed_orcids":["https://orcid.org/0009-0006-5596-5709"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Manon Le Goff","raw_affiliation_strings":["ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0009-0006-5596-5709","affiliations":[{"raw_affiliation_string":"ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112277899","display_name":"Fr\u00e9d\u00e9rique Cerqueira","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9rique Cerqueira","raw_affiliation_strings":["ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042798745","display_name":"Benjamin Penaud","orcid":"https://orcid.org/0000-0001-8881-9253","observed_orcids":["https://orcid.org/0000-0001-8881-9253"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Benjamin Penaud","raw_affiliation_strings":["ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027850790","display_name":"Pierre\u2010Alexandre Gagnaire","orcid":"https://orcid.org/0000-0002-1908-3235","observed_orcids":["https://orcid.org/0000-0002-1908-3235"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre-Alexandre Gagnaire","raw_affiliation_strings":["ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0002-1908-3235","affiliations":[{"raw_affiliation_string":"ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002450283","display_name":"Fr\u00e9d\u00e9rique Viard","orcid":"https://orcid.org/0000-0001-5603-9527","observed_orcids":["https://orcid.org/0000-0001-5603-9527"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Fr\u00e9d\u00e9rique Viard","raw_affiliation_strings":["ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0001-5603-9527","affiliations":[{"raw_affiliation_string":"ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5139603587","display_name":"Nicolas Bierne","orcid":"https://orcid.org/0000-0003-1856-3197","observed_orcids":["https://orcid.org/0000-0003-1856-3197"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I159885104","display_name":"\u00c9cole Pratique des Hautes \u00c9tudes","ror":"https://ror.org/046b3cj80","country_code":"FR","type":"education","lineage":["https://openalex.org/I159885104","https://openalex.org/I2746051580"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Nicolas Bierne","raw_affiliation_strings":["ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0003-1856-3197","affiliations":[{"raw_affiliation_string":"ISEM, University of Montpellier, CNRS, EPHE, IRD, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I4210105943","https://openalex.org/I4210166444"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.7124000191688538,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11764","display_name":"Evolution and Genetic Dynamics","score":0.7124000191688538,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.2563000023365021,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.007699999958276749,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/adaptive-introgression","display_name":"adaptive introgression","score":1.0},{"id":"https://openalex.org/keywords/local-adaptation","display_name":"local adaptation","score":0.7179999947547913},{"id":"https://openalex.org/keywords/local-selection","display_name":"local selection","score":0.5220000147819519},{"id":"https://openalex.org/keywords/local-ancestry","display_name":"local ancestry","score":0.8920000195503235},{"id":"https://openalex.org/keywords/ciona-intestinalis","display_name":"Ciona intestinalis","score":0.9330000281333923},{"id":"https://openalex.org/keywords/ascidians","display_name":"ascidians","score":0.6069999933242798},{"id":"https://openalex.org/keywords/hybridization","display_name":"hybridization","score":0.5090000033378601}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8271999955177307},{"id":"https://openalex.org/C8182607","wikidata":"https://www.wikidata.org/wiki/Q2094405","display_name":"Introgression","level":3,"score":0.6991000175476074},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.6306999921798706},{"id":"https://openalex.org/C2780354846","wikidata":"https://www.wikidata.org/wiki/Q24962946","display_name":"Local adaptation","level":3,"score":0.6305000185966492},{"id":"https://openalex.org/C37463918","wikidata":"https://www.wikidata.org/wiki/Q387981","display_name":"Allele frequency","level":4,"score":0.5853000283241272},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.5680000185966492},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5428000092506409},{"id":"https://openalex.org/C106978037","wikidata":"https://www.wikidata.org/wiki/Q967880","display_name":"Panmixia","level":5,"score":0.4302999973297119},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41519999504089355},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.35350000858306885},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.33730000257492065},{"id":"https://openalex.org/C2779528156","wikidata":"https://www.wikidata.org/wiki/Q2567701","display_name":"Ciona intestinalis","level":3,"score":0.33660000562667847},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3208000063896179},{"id":"https://openalex.org/C49735019","wikidata":"https://www.wikidata.org/wiki/Q4115005","display_name":"Selective sweep","level":5,"score":0.30390000343322754},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.288100004196167},{"id":"https://openalex.org/C107023163","wikidata":"https://www.wikidata.org/wiki/Q143089","display_name":"Gene flow","level":4,"score":0.2849999964237213},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.27880001068115234},{"id":"https://openalex.org/C172777353","wikidata":"https://www.wikidata.org/wiki/Q1374271","display_name":"Genetic variability","level":4,"score":0.2646999955177307}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.29.754965","doi":"https://doi.org/10.64898/2026.09.29.754965","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.29.754965","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/04/2026.09.29.754965.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.29.754965","doi":"https://doi.org/10.64898/2026.09.29.754965","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.29.754965","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/10/04/2026.09.29.754965.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1366889336","display_name":null,"funder_award_id":"10-LABX-04-01","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G1798922140","display_name":null,"funder_award_id":"ANR-10- LABX-04-01","funder_id":"https://openalex.org/F4320317508","funder_display_name":"Centre M\u00e9diterran\u00e9en de l\u2019Environnement et de la Biodiversit\u00e9"},{"id":"https://openalex.org/G4714068872","display_name":null,"funder_award_id":"ANR\u201010\u2010 LABX\u201004\u201001","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G5496638944","display_name":"DockEvol: using ports as Darwinian field-labs to study marine evolution in the Anthropocene","funder_award_id":"ANR-23-CE02-0020","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7080048889","display_name":null,"funder_award_id":"ANR-23","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320317508","display_name":"Centre M\u00e9diterran\u00e9en de l\u2019Environnement et de la Biodiversit\u00e9","ror":"https://ror.org/04eeyfe07"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320324952","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72"},{"id":"https://openalex.org/F4320328356","display_name":"R\u00e9gion Occitanie Pyr\u00e9n\u00e9es-M\u00e9diterran\u00e9e","ror":"https://ror.org/05mzwwx48"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7219685155.pdf","grobid_xml":"https://content.openalex.org/works/W7219685155.grobid-xml"},"referenced_works_count":52,"referenced_works":["https://openalex.org/W1596652233","https://openalex.org/W1965501302","https://openalex.org/W1992375051","https://openalex.org/W1999623479","https://openalex.org/W2008345120","https://openalex.org/W2020943359","https://openalex.org/W2021736445","https://openalex.org/W2022293111","https://openalex.org/W2051583712","https://openalex.org/W2079949023","https://openalex.org/W2082067939","https://openalex.org/W2098615058","https://openalex.org/W2103441770","https://openalex.org/W2115277906","https://openalex.org/W2137303277","https://openalex.org/W2155225768","https://openalex.org/W2155670634","https://openalex.org/W2179986294","https://openalex.org/W2346624115","https://openalex.org/W2474836229","https://openalex.org/W2530727435","https://openalex.org/W2560383108","https://openalex.org/W2943821172","https://openalex.org/W2948658132","https://openalex.org/W2949126322","https://openalex.org/W2949352374","https://openalex.org/W2949573820","https://openalex.org/W2950061158","https://openalex.org/W2980417415","https://openalex.org/W3035343477","https://openalex.org/W3044768119","https://openalex.org/W3047249287","https://openalex.org/W3112150408","https://openalex.org/W3121434726","https://openalex.org/W3139367551","https://openalex.org/W3173730881","https://openalex.org/W3195279799","https://openalex.org/W3200488649","https://openalex.org/W3202168308","https://openalex.org/W3206575932","https://openalex.org/W4280555474","https://openalex.org/W4283771442","https://openalex.org/W4291016546","https://openalex.org/W4296760260","https://openalex.org/W4309757436","https://openalex.org/W4322760742","https://openalex.org/W4382631675","https://openalex.org/W4395691532","https://openalex.org/W4400140829","https://openalex.org/W4411045125","https://openalex.org/W4413394884","https://openalex.org/W4416729254"],"related_works":["https://openalex.org/W4395691532","https://openalex.org/W3213587877","https://openalex.org/W7165425604","https://openalex.org/W3021082189","https://openalex.org/W3202168308","https://openalex.org/W2083598124","https://openalex.org/W2755565389","https://openalex.org/W3047249287","https://openalex.org/W4411519428","https://openalex.org/W4392857153"],"abstract_inverted_index":{"Abstract":[0],"Adaptive":[1],"introgression,":[2],"the":[3,25,57,71,81,97,111,115,126,130,140,163,188,245,261,340,374,377,398,420],"transfer":[4,235],"of":[5,19,27,60,99,114,165,184,206,220,339,376,388,400],"beneficial":[6,236,316],"alleles":[7],"between":[8,83,92,143,156,209,232,304,412],"species":[9,233,241,263,395],"through":[10,320],"hybridization,":[11],"is":[12,74,315],"increasingly":[13],"recognized":[14],"as":[15,322],"an":[16,61,100,166,225,312],"important":[17],"source":[18],"adaptation":[20,222],"to":[21,195,242,247,249,302],"novel":[22],"environments.":[23],"However,":[24,253],"theory":[26],"adaptive":[28,52,62,84,101,185,210,313,341,378,389,435],"introgression":[29,186,390],"has":[30],"primarily":[31],"been":[32],"developed":[33],"for":[34],"a":[35,50,68,153,181,207,218,250,269,299,323,385,392,433],"single":[36],"panmictic":[37],"population,":[38],"whereas":[39,348],"many":[40],"empirical":[41],"examples":[42],"involve":[43],"spatially":[44],"subdivided":[45,267],"populations.":[46],"In":[47,265],"such":[48,254],"systems,":[49],"low-frequency":[51,270],"allele":[53,73,85,123,136,157,211,272,289,314,342,367,413,426],"may":[54,273],"either":[55,274],"represent":[56],"leading":[58],"edge":[59],"travelling":[63,227,324],"wave":[64],"or":[65,278],"occur":[66],"in":[67,180,187,384,391,424],"subpopulation":[69],"where":[70],"introgressed":[72,88,103,214,271,292,331,346,401,416,425],"locally":[75,308],"selected":[76,280],"against.":[77],"We":[78,176,202,380,408],"explored":[79],"how":[80],"relationship":[82,208,364],"frequency":[86,137,158,212,290,368,414,427],"and":[87,145,159,199,213,307,355,415],"tract":[89,120,160,215,293,402,417],"length":[90,161,403],"differs":[91],"these":[93],"two":[94],"scenarios.":[95],"During":[96],"spread":[98,164],"wave,":[102],"tracts":[104],"are":[105,256],"progressively":[106,329],"eroded":[107],"by":[108,129,396],"recombination":[109,328],"with":[110,291],"genetic":[112,237],"background":[113],"receiving":[116],"species,":[117],"so":[118],"that":[119,287,422],"length,":[121,216,418],"like":[122],"frequency,":[124],"reflects":[125,369,428],"distance":[127],"traveled":[128],"wave.":[131,228,325,379,436],"Under":[132],"local":[133,141,174,200,221,370,405,429],"adaptation,":[134],"however,":[135],"depends":[138],"on":[139,344],"balance":[142],"selection":[144,359,371,430],"migration,":[146],"generally":[147],"breaking":[148],"this":[149,178,296,363,382],"relationship.":[150],"Simulations":[151],"predicted":[152],"positive":[154,306],"correlation":[155,172,411],"during":[162],"unconditionally":[167],"advantageous":[168,259],"allele,":[169],"but":[170],"no":[171,204,410],"under":[173],"adaptation.":[175],"tested":[177,381],"prediction":[179,383],"well-characterized":[182],"case":[183,387],"sea":[189,393],"squirt":[190,394],"Ciona":[191],"intestinalis,":[192],"using":[193,404],"haplotagging":[194],"reconstruct":[196],"phased":[197],"genomes":[198],"ancestry.":[201],"found":[203,409],"evidence":[205],"supporting":[217,419],"model":[219],"rather":[223,372,431],"than":[224,373,432],"ongoing":[226],"Author":[229],"summary":[230],"Hybridization":[231],"can":[234],"variants":[238,255],"from":[239],"one":[240],"another,":[243],"enabling":[244],"latter":[246],"adapt":[248],"new":[251],"environment.":[252],"not":[257],"necessarily":[258],"throughout":[260],"recipient":[262],"range.":[264],"geographically":[266],"populations,":[268,362],"have":[275,336,352],"arrived":[276],"recently":[277,349],"be":[279],"against":[281],"locally.":[282],"Using":[283],"simulations,":[284],"we":[285],"show":[286],"combining":[288],"lengths":[294],"clarifies":[295],"ambiguity,":[297],"offering":[298],"straightforward":[300],"method":[301],"distinguish":[303],"globally":[305],"varying":[309],"selection.":[310],"When":[311,358],"everywhere,":[317],"it":[318],"spreads":[319],"populations":[321,351],"Over":[326],"time,":[327],"shortens":[330],"tracts.":[332,357],"Populations":[333],"reached":[334,350],"first":[335],"higher":[337],"frequencies":[338,354],"sitting":[343],"longer":[345],"tracts,":[347],"lower":[353],"shorter":[356],"varies":[360],"among":[361],"disappears":[365],"because":[366],"history":[375],"confirmed":[386],"characterizing":[397],"footprint":[399],"ancestry":[406],"reconstruction.":[407],"hypothesis":[421],"variation":[423],"traveling":[434]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2026-10-05T00:00:00"}