{"id":"https://openalex.org/W7214920271","doi":"https://doi.org/10.1038/s41467-026-78064-0","title":"3D Reconstruction of Dinoflagellate Chromosomes from Hi-C Data Challenges the Cholesteric Liquid Crystal Hypothesis","display_name":"3D Reconstruction of Dinoflagellate Chromosomes from Hi-C Data Challenges the Cholesteric Liquid Crystal Hypothesis","publication_year":2026,"publication_date":"2026-09-30","ids":{"openalex":"https://openalex.org/W7214920271","doi":"https://doi.org/10.1038/s41467-026-78064-0","pmid":"https://pubmed.ncbi.nlm.nih.gov/42957663","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13720122"},"language":"en","primary_location":{"id":"doi:10.1038/s41467-026-78064-0","doi":"https://doi.org/10.1038/s41467-026-78064-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-026-78064-0","pdf_url":"https://www.nature.com/articles/s41467-026-78064-0_reference.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://www.nature.com/articles/s41467-026-78064-0_reference.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011693596","display_name":"Lucas Philipp","orcid":"https://orcid.org/0000-0001-6454-4275","observed_orcids":["https://orcid.org/0000-0001-6454-4275"]},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Lucas Philipp","raw_affiliation_strings":["Quantitative Life Sciences Program, McGill University, Montreal, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Quantitative Life Sciences Program, McGill University, Montreal, Canada","institution_ids":["https://openalex.org/I5023651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5005939272","display_name":"Georgi K. Marinov","orcid":"https://orcid.org/0000-0003-1822-7273","observed_orcids":["https://orcid.org/0000-0003-1822-7273"]},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Georgi K. Marinov","raw_affiliation_strings":["Department of Genetics, Stanford University, Palo Alto, USA"],"raw_orcid":"https://orcid.org/0000-0003-1822-7273","affiliations":[{"raw_affiliation_string":"Department of Genetics, Stanford University, Palo Alto, USA","institution_ids":["https://openalex.org/I97018004"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5153655691","display_name":"Stephen Todd","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I124357947","display_name":"University of London","ror":"https://ror.org/04cw6st05","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947"]},{"id":"https://openalex.org/I55521800","display_name":"Goldsmiths University of London","ror":"https://ror.org/01khx4a30","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I55521800"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Stephen Todd","raw_affiliation_strings":["Department of Computing, Goldsmiths, University of London, London, United Kingdom","London Geometry Ltd., London, United Kingdom"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing, Goldsmiths, University of London, London, United Kingdom","institution_ids":["https://openalex.org/I124357947","https://openalex.org/I55521800"]},{"raw_affiliation_string":"London Geometry Ltd., London, United Kingdom","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5037978212","display_name":"Stephanie C. Weber","orcid":"https://orcid.org/0000-0002-7297-2875","observed_orcids":["https://orcid.org/0000-0002-7297-2875"]},"institutions":[{"id":"https://openalex.org/I5023651","display_name":"McGill University","ror":"https://ror.org/01pxwe438","country_code":"CA","type":"education","lineage":["https://openalex.org/I5023651"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Stephanie C. Weber","raw_affiliation_strings":["Department of Biology, McGill University, Montreal, Canada. steph.weber@mcgill.ca","Department of Physics, McGill University, Montreal, Canada. steph.weber@mcgill.ca","Quantitative Life Sciences Program, McGill University, Montreal, Canada. steph.weber@mcgill.ca"],"raw_orcid":"https://orcid.org/0000-0002-7297-2875","affiliations":[{"raw_affiliation_string":"Department of Biology, McGill University, Montreal, Canada. steph.weber@mcgill.ca","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Department of Physics, McGill University, Montreal, Canada. steph.weber@mcgill.ca","institution_ids":["https://openalex.org/I5023651"]},{"raw_affiliation_string":"Quantitative Life Sciences Program, McGill University, Montreal, Canada. steph.weber@mcgill.ca","institution_ids":["https://openalex.org/I5023651"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5037978212"],"corresponding_institution_ids":["https://openalex.org/I5023651"],"apc_list":{"value":6990,"currency":"USD","value_usd":6990},"apc_paid":{"value":6990,"currency":"USD","value_usd":6990},"fwci":2.9209,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.92592205,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"17","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9907000064849854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.003800000064074993,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.00039999998989515007,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dinoflagellate-chromosomes","display_name":"dinoflagellate chromosomes","score":0.9739999771118164},{"id":"https://openalex.org/keywords/hi-c-contact-maps","display_name":"Hi-C contact maps","score":0.7329999804496765},{"id":"https://openalex.org/keywords/topologically-associated-domains","display_name":"topologically associating domains","score":0.7979999780654907},{"id":"https://openalex.org/keywords/transcriptional-activity","display_name":"transcriptional activity","score":0.550000011920929},{"id":"https://openalex.org/keywords/symbiodinium-microadriaticum","display_name":"Symbiodinium microadriaticum","score":1.0},{"id":"https://openalex.org/keywords/breviolum-minutum","display_name":"Breviolum minutum","score":1.0},{"id":"https://openalex.org/keywords/nematic-order","display_name":"nematic order","score":0.5090000033378601}],"concepts":[{"id":"https://openalex.org/C2780204098","wikidata":"https://www.wikidata.org/wiki/Q120490","display_name":"Dinoflagellate","level":2,"score":0.6183000206947327},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4374000132083893},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41019999980926514},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4034999907016754},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.3986999988555908},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.39239999651908875},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3578000068664551},{"id":"https://openalex.org/C2776110070","wikidata":"https://www.wikidata.org/wiki/Q2455930","display_name":"Fossil Record","level":2,"score":0.3562000095844269},{"id":"https://openalex.org/C109950114","wikidata":"https://www.wikidata.org/wiki/Q4464732","display_name":"3D reconstruction","level":2,"score":0.3366999924182892},{"id":"https://openalex.org/C2778008130","wikidata":"https://www.wikidata.org/wiki/Q1075927","display_name":"Cholesteric liquid crystal","level":3,"score":0.3215000033378601},{"id":"https://openalex.org/C13274807","wikidata":"https://www.wikidata.org/wiki/Q203989","display_name":"Liquid crystal","level":2,"score":0.3100000023841858},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.3021000027656555},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.2912999987602234},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.2815000116825104},{"id":"https://openalex.org/C2989255885","wikidata":"https://www.wikidata.org/wiki/Q500256","display_name":"Molecular conformation","level":3,"score":0.27720001339912415},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.2694999873638153},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2687999904155731},{"id":"https://openalex.org/C20885615","wikidata":"https://www.wikidata.org/wiki/Q825595","display_name":"Surface reconstruction","level":3,"score":0.25529998540878296},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2547999918460846}],"mesh":[{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002843","descriptor_name":"Chromatin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D004141","descriptor_name":"Dinoflagellida","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D021621","descriptor_name":"Imaging, Three-Dimensional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D050866","descriptor_name":"Liquid Crystals","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1038/s41467-026-78064-0","doi":"https://doi.org/10.1038/s41467-026-78064-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-026-78064-0","pdf_url":"https://www.nature.com/articles/s41467-026-78064-0_reference.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},{"id":"doi:10.1101/2025.01.24.634729","doi":"https://doi.org/10.1101/2025.01.24.634729","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.01.24.634729","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:13720122","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13720122/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13720122/pdf/41467_2026_Article_78064.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nat Commun","raw_type":"Text"},{"id":"pmid:42957663","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42957663","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature communications","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:76752f62bef347ae89c700d5d534f79a","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/76752f62bef347ae89c700d5d534f79a","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Nature Communications, Vol 17, Iss 1 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1038/s41467-026-78064-0","doi":"https://doi.org/10.1038/s41467-026-78064-0","is_oa":true,"landing_page_url":"https://doi.org/10.1038/s41467-026-78064-0","pdf_url":"https://www.nature.com/articles/s41467-026-78064-0_reference.pdf","source":{"id":"https://openalex.org/S64187185","display_name":"Nature Communications","issn_l":"2041-1723","issn":["2041-1723"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310319908","host_organization_name":"Nature Portfolio","host_organization_lineage":["https://openalex.org/P4310319908","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Nature Portfolio","Springer Nature"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nature Communications","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320994","display_name":"Canada Research Chairs","ror":"https://ror.org/0517h6h17"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7214920271.pdf","grobid_xml":"https://content.openalex.org/works/W7214920271.grobid-xml"},"referenced_works_count":66,"referenced_works":["https://openalex.org/W1746437285","https://openalex.org/W1879685033","https://openalex.org/W1963518477","https://openalex.org/W1965046716","https://openalex.org/W1968282359","https://openalex.org/W1973062929","https://openalex.org/W1979998187","https://openalex.org/W2009653511","https://openalex.org/W2010362288","https://openalex.org/W2012581235","https://openalex.org/W2019619926","https://openalex.org/W2019728136","https://openalex.org/W2025936994","https://openalex.org/W2032348146","https://openalex.org/W2032605034","https://openalex.org/W2033886714","https://openalex.org/W2035983538","https://openalex.org/W2053235652","https://openalex.org/W2056148982","https://openalex.org/W2060878862","https://openalex.org/W2065288411","https://openalex.org/W2068760198","https://openalex.org/W2073504534","https://openalex.org/W2081984032","https://openalex.org/W2084861373","https://openalex.org/W2089920594","https://openalex.org/W2090037139","https://openalex.org/W2097798909","https://openalex.org/W2098145187","https://openalex.org/W2116334018","https://openalex.org/W2153148487","https://openalex.org/W2170188719","https://openalex.org/W2187863150","https://openalex.org/W2395008095","https://openalex.org/W2563800406","https://openalex.org/W2594889715","https://openalex.org/W2594949412","https://openalex.org/W2597274540","https://openalex.org/W2738850628","https://openalex.org/W2755091939","https://openalex.org/W2887754912","https://openalex.org/W2910363524","https://openalex.org/W2913032631","https://openalex.org/W2947157394","https://openalex.org/W2951131740","https://openalex.org/W2953147680","https://openalex.org/W2960979937","https://openalex.org/W2989845613","https://openalex.org/W2998784028","https://openalex.org/W3045353687","https://openalex.org/W3050508217","https://openalex.org/W3080497669","https://openalex.org/W3087648251","https://openalex.org/W3087868350","https://openalex.org/W3157784259","https://openalex.org/W3158874019","https://openalex.org/W4282568831","https://openalex.org/W4319872084","https://openalex.org/W4384155182","https://openalex.org/W4392727691","https://openalex.org/W4396661292","https://openalex.org/W4396667339","https://openalex.org/W4398238873","https://openalex.org/W4408522370","https://openalex.org/W6968004192","https://openalex.org/W7202392143"],"related_works":["https://openalex.org/W2801383425","https://openalex.org/W3039961872","https://openalex.org/W2955232984","https://openalex.org/W2581189997","https://openalex.org/W7008512696","https://openalex.org/W1979998187","https://openalex.org/W7162206799","https://openalex.org/W2035983538","https://openalex.org/W7223175244","https://openalex.org/W4399999620"],"abstract_inverted_index":{"Dinoflagellates":[0],"have":[1],"permanently":[2],"condensed":[3,202],"chromosomes":[4,198],"that":[5,18,29,143,196,210],"are":[6,43,134,161,199],"often":[7],"described":[8],"as":[9],"cholesteric":[10,124],"liquid":[11],"crystals":[12],"(CLCs).":[13],"The":[14],"CLC":[15,58,138,192],"model":[16,59,193],"proposes":[17],"DNA":[19],"is":[20],"organized":[21,200],"into":[22,147,201],"parallel":[23],"fibers":[24],"within":[25],"stacked":[26],"discs,":[27],"such":[28],"the":[30,41,57,137,184,190],"fiber":[31],"orientation":[32],"rotates":[33],"between":[34],"adjacent":[35],"discs.":[36,125],"Extrachromosomal":[37],"loops":[38],"extending":[39],"from":[40,130],"discs":[42],"hypothesized":[44],"to":[45,51,86],"be":[46],"more":[47],"accessible":[48],"and":[49,101,105,115,194],"thus":[50],"contain":[52],"transcriptionally":[53],"active":[54],"genes.":[55],"Although":[56],"captures":[60],"some":[61],"features":[62],"of":[63,90,123,180],"dinoflagellate":[64,95,197],"chromosome":[65,91,185],"structure,":[66],"its":[67],"validity":[68],"has":[69],"not":[70,207,212],"been":[71],"rigorously":[72],"tested":[73],"against":[74],"modern":[75],"genomic":[76],"data.":[77],"Here,":[78],"we":[79,119,141,176],"use":[80],"chromatin":[81],"conformation":[82],"capture":[83],"(Hi-C)":[84],"data":[85,133,171],"simulate":[87],"3D":[88],"conformations":[89,111],"scaffolds":[92],"for":[93,164],"three":[94],"species:":[96],"Fugacium":[97],"kawagutii,":[98],"Symbiodinium":[99],"microadriaticum,":[100],"Breviolum":[102],"minutum.":[103],"Consensus":[104],"population-based":[106],"modeling":[107],"generate":[108],"diverse":[109],"polymer":[110],"with":[112,136,155,204],"moderate":[113],"orientational":[114],"nematic":[116],"order.":[117],"However,":[118],"find":[120,177],"no":[121,178],"evidence":[122],"Moreover,":[126],"contact":[127,153],"probability":[128],"curves":[129],"empirical":[131],"Hi-C":[132,152],"inconsistent":[135],"model.":[139],"Nevertheless,":[140],"show":[142],"introducing":[144],"locus-specific":[145],"boundaries":[146],"CLCs":[148],"can":[149],"produce":[150],"simulated":[151,174],"maps":[154],"topologically":[156],"associating":[157],"domains":[158],"(TADs),":[159],"which":[160],"observed":[162],"experimentally":[163],"these":[165],"species.":[166],"Finally,":[167],"by":[168],"mapping":[169],"RNA-seq":[170],"onto":[172],"our":[173],"conformations,":[175],"enrichment":[179],"transcriptional":[181],"activity":[182],"at":[183],"periphery.":[186],"Our":[187],"results":[188],"challenge":[189],"long-standing":[191],"suggest":[195],"structures":[203],"local":[205],"but":[206],"global":[208],"order":[209],"does":[211],"impede":[213],"transcription.":[214]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":1}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-10-01T00:00:00"}
