{"id":"https://openalex.org/W7214670569","doi":"https://doi.org/10.64898/2026.09.28.754864","title":"DAPHNE: A global database of pest herbivores and their natural enemies","display_name":"DAPHNE: A global database of pest herbivores and their natural enemies","publication_year":2026,"publication_date":"2026-09-28","ids":{"openalex":"https://openalex.org/W7214670569","doi":"https://doi.org/10.64898/2026.09.28.754864"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.28.754864","doi":"https://doi.org/10.64898/2026.09.28.754864","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.28.754864","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/28/2026.09.28.754864.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/28/2026.09.28.754864.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071635663","display_name":"Daan R. Scheepens","orcid":"https://orcid.org/0009-0007-7574-9621","observed_orcids":["https://orcid.org/0009-0007-7574-9621"]},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Daan Scheepens","raw_affiliation_strings":["Centre for Biodiversity and Environment Research, University College London, London, United Kingdom"],"raw_orcid":"https://orcid.org/0009-0007-7574-9621","affiliations":[{"raw_affiliation_string":"Centre for Biodiversity and Environment Research, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017740629","display_name":"Robin Freeman","orcid":"https://orcid.org/0000-0002-0560-8942","observed_orcids":["https://orcid.org/0000-0002-0560-8942"]},"institutions":[{"id":"https://openalex.org/I1321067030","display_name":"Zoological Society of London","ror":"https://ror.org/03px4ez74","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I1321067030"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Robin Freeman","raw_affiliation_strings":["Institute of Zoology, Zoological Society London, London, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0002-0560-8942","affiliations":[{"raw_affiliation_string":"Institute of Zoology, Zoological Society London, London, United Kingdom","institution_ids":["https://openalex.org/I1321067030"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047278242","display_name":"Tim Newbold","orcid":"https://orcid.org/0000-0001-7361-0051","observed_orcids":["https://orcid.org/0000-0001-7361-0051"]},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tim Newbold","raw_affiliation_strings":["Centre for Biodiversity and Environment Research, University College London, London, United Kingdom"],"raw_orcid":"https://orcid.org/0000-0001-7361-0051","affiliations":[{"raw_affiliation_string":"Centre for Biodiversity and Environment Research, University College London, London, United Kingdom","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5071635663"],"corresponding_institution_ids":["https://openalex.org/I45129253"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10135","display_name":"Insect-Plant Interactions and Control","score":0.673799991607666,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10135","display_name":"Insect-Plant Interactions and Control","score":0.673799991607666,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12701","display_name":"Biological Control of Invasive Species","score":0.19750000536441803,"subfield":{"id":"https://openalex.org/subfields/1109","display_name":"Insect Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.013299999758601189,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/natural-enemies","display_name":"natural enemies","score":0.9940000176429749},{"id":"https://openalex.org/keywords/biological-control","display_name":"biological control","score":0.9710000157356262},{"id":"https://openalex.org/keywords/species-interactions","display_name":"species interactions","score":0.8059999942779541},{"id":"https://openalex.org/keywords/large-language-models","display_name":"large language models","score":0.7570000290870667},{"id":"https://openalex.org/keywords/text-mining","display_name":"text mining","score":0.906000018119812},{"id":"https://openalex.org/keywords/knowledge-extraction","display_name":"knowledge extraction","score":0.8980000019073486},{"id":"https://openalex.org/keywords/crop-pests","display_name":"crop pests","score":0.4429999887943268},{"id":"https://openalex.org/keywords/parasitism","display_name":"parasitism","score":0.7120000123977661},{"id":"https://openalex.org/keywords/predation","display_name":"predation","score":0.7839999794960022},{"id":"https://openalex.org/keywords/hyperparasitism","display_name":"hyperparasitism","score":0.8740000128746033},{"id":"https://openalex.org/keywords/gall-formation","display_name":"gall formation","score":0.5630000233650208},{"id":"https://openalex.org/keywords/granivory","display_name":"granivory","score":0.7609999775886536},{"id":"https://openalex.org/keywords/frugivory","display_name":"frugivory","score":0.9829999804496765},{"id":"https://openalex.org/keywords/invasive-species","display_name":"invasive species","score":0.890999972820282},{"id":"https://openalex.org/keywords/disease-vectors","display_name":"disease vectors","score":0.9599999785423279},{"id":"https://openalex.org/keywords/food-webs","display_name":"food webs","score":0.9539999961853027}],"concepts":[{"id":"https://openalex.org/C46325548","wikidata":"https://www.wikidata.org/wiki/Q59099","display_name":"Herbivore","level":2,"score":0.7638999819755554},{"id":"https://openalex.org/C22508944","wikidata":"https://www.wikidata.org/wiki/Q568174","display_name":"PEST analysis","level":2,"score":0.7542999982833862},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.6049000024795532},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5857999920845032},{"id":"https://openalex.org/C540442320","wikidata":"https://www.wikidata.org/wiki/Q2306047","display_name":"Pest control","level":2,"score":0.4722999930381775},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.44269999861717224},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.3995000123977661},{"id":"https://openalex.org/C123963621","wikidata":"https://www.wikidata.org/wiki/Q525309","display_name":"Integrated pest management","level":2,"score":0.383899986743927},{"id":"https://openalex.org/C104727253","wikidata":"https://www.wikidata.org/wiki/Q116890","display_name":"Biological pest control","level":2,"score":0.3610000014305115},{"id":"https://openalex.org/C2776608160","wikidata":"https://www.wikidata.org/wiki/Q4785462","display_name":"Natural (archaeology)","level":2,"score":0.35920000076293945},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32580000162124634},{"id":"https://openalex.org/C2992527028","wikidata":"https://www.wikidata.org/wiki/Q43478","display_name":"Natural enemies","level":2,"score":0.3203999996185303},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.303600013256073},{"id":"https://openalex.org/C165287380","wikidata":"https://www.wikidata.org/wiki/Q2916569","display_name":"Foraging","level":2,"score":0.2888000011444092},{"id":"https://openalex.org/C189592816","wikidata":"https://www.wikidata.org/wiki/Q427626","display_name":"Taxonomic rank","level":3,"score":0.2815000116825104},{"id":"https://openalex.org/C147135968","wikidata":"https://www.wikidata.org/wiki/Q39286","display_name":"Entomology","level":2,"score":0.26989999413490295},{"id":"https://openalex.org/C54286561","wikidata":"https://www.wikidata.org/wiki/Q397350","display_name":"Agroforestry","level":1,"score":0.2678999900817871},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.2639999985694885},{"id":"https://openalex.org/C136020623","wikidata":"https://www.wikidata.org/wiki/Q183368","display_name":"Invasive species","level":2,"score":0.25929999351501465},{"id":"https://openalex.org/C163276114","wikidata":"https://www.wikidata.org/wiki/Q484591","display_name":"Natural history","level":2,"score":0.2572999894618988},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.2547000050544739},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.2524000108242035}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.28.754864","doi":"https://doi.org/10.64898/2026.09.28.754864","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.28.754864","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/28/2026.09.28.754864.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.28.754864","doi":"https://doi.org/10.64898/2026.09.28.754864","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.28.754864","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/28/2026.09.28.754864.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.40450000762939453,"id":"https://metadata.un.org/sdg/2","display_name":"Zero hunger"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7214670569.pdf","grobid_xml":"https://content.openalex.org/works/W7214670569.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W1998494818","https://openalex.org/W2049916132","https://openalex.org/W2054637019","https://openalex.org/W2096369236","https://openalex.org/W2147343628","https://openalex.org/W2195675270","https://openalex.org/W2293247791","https://openalex.org/W2562824057","https://openalex.org/W2592348297","https://openalex.org/W2887713204","https://openalex.org/W2937730115","https://openalex.org/W2952490502","https://openalex.org/W3031189206","https://openalex.org/W3081853933","https://openalex.org/W3127758167","https://openalex.org/W3157954736","https://openalex.org/W3163260641","https://openalex.org/W3201666756","https://openalex.org/W4220845458","https://openalex.org/W4283170666","https://openalex.org/W4391971084","https://openalex.org/W4396977542","https://openalex.org/W4398175190","https://openalex.org/W4398764101","https://openalex.org/W4401268044","https://openalex.org/W4403081306","https://openalex.org/W4406866255","https://openalex.org/W4409075993","https://openalex.org/W4409183411","https://openalex.org/W4410392702","https://openalex.org/W4411162193","https://openalex.org/W4412993391","https://openalex.org/W4413107227","https://openalex.org/W4413206197","https://openalex.org/W4415122647","https://openalex.org/W4415673947","https://openalex.org/W4415912410","https://openalex.org/W4416143873","https://openalex.org/W7154059826","https://openalex.org/W7161392182","https://openalex.org/W7164296394"],"related_works":["https://openalex.org/W2615856750","https://openalex.org/W6922479601","https://openalex.org/W2581964799","https://openalex.org/W6893391571","https://openalex.org/W6931575743","https://openalex.org/W2236590785","https://openalex.org/W3209962457","https://openalex.org/W2366330653","https://openalex.org/W4407012261","https://openalex.org/W6959651381"],"abstract_inverted_index":{"Abstract":[0],"Anticipating":[1],"and":[2,17,25,54,59,65,88,95,107,139,175,179,181,204,207,212,228,233,271,290,296,299],"managing":[3],"the":[4,13,148,167,208,216,250,265,285],"impact":[5],"of":[6,22,36,38,102,121,124,136,150,185,200,210,215,235,244,267,282,287],"herbivorous":[7],"pests":[8,16,270],"requires":[9],"evidence-based":[10],"knowledge":[11,93],"about":[12],"interactions":[14,27,69,153],"between":[15,70],"their":[18,140,272],"natural":[19,196,273],"enemies.":[20],"Knowledge":[21],"species\u2019":[23,190],"ecologies":[24],"biological":[26,128],"are":[28,73],"typically":[29],"disseminated":[30],"in":[31,98,147],"unstructured":[32],"text":[33],"across":[34],"hundreds":[35],"thousands":[37],"scientific":[39,45,103],"articles":[40],"spanning":[41],"a":[42,86,99,122,133,183,241,280],"rapidly":[43],"growing":[44],"literature,":[46],"but":[47,246],"manually":[48],"screening":[49],"this":[50,110],"literature":[51,297],"is":[52],"time-consuming":[53],"impractical":[55],"at":[56,166],"scale.":[57],"Taxonomic":[58],"geographic":[60],"coverage":[61],"thus":[62],"remains":[63],"sparse,":[64],"structured":[66],"data":[67,221],"on":[68,127],"individual":[71],"species":[72,152,168,289],"lacking,":[74],"particularly":[75],"for":[76,92,279],"invertebrates.":[77],"Large":[78],"language":[79],"models":[80],"(LLMs)":[81],"have":[82,256],"recently":[83],"emerged":[84],"as":[85,189],"novel":[87],"powerful":[89],"text-mining":[90],"tool":[91],"extraction":[94,149],"evidence":[96],"synthesis":[97],"wide":[100],"range":[101,184],"disciplines,":[104],"including":[105,284],"ecology":[106],"conservation.":[108],"In":[109,262],"study,":[111],"we":[112],"use":[113],"an":[114],"open-weight,":[115],"pre-trained":[116],"LLM":[117],"to":[118,131,264],"analyse":[119],"abstracts":[120],"corpus":[123],"published":[125,156],"material":[126],"pest":[129,157,192,194],"control":[130,158],"obtain":[132],"global":[134],"Database":[135],"Pest":[137],"Herbivores":[138],"Natural":[141],"Enemies":[142],"(DAPHNE).":[143],"This":[144],"method":[145],"resulted":[146],"175,404":[151],"from":[154],"112,830":[155],"studies,":[159],"containing":[160],"16,755":[161],"unique":[162],"animal":[163],"taxa":[164],"resolved":[165],"level.":[169],"Interactions":[170],"include":[171],"herbivory":[172],"(granivory,":[173],"frugivory":[174],"gall-formation),":[176],"predation,":[177],"parasitism":[178],"hyperparasitism,":[180],"comprise":[182],"additional":[186],"information,":[187],"such":[188],"taxonomy,":[191],"status,":[193],"importance,":[195,198],"enemy":[197],"provision":[199],"biocontrol,":[201],"associated":[202],"plants":[203],"industries,":[205],"invasiveness":[206],"vectoring":[209],"pathogens":[211],"diseases.":[213],"Validation":[214],"results":[217],"shows":[218,240],"that":[219,249,254],"most":[220],"columns":[222],"were":[223],"extracted":[224],"with":[225,237],"high":[226,242],"recall":[227],"precision":[229],"(":[230],">":[231],"90%)":[232],"comparison":[234],"DAPHNE":[236,275],"other":[238,260],"sources":[239],"degree":[243],"agreement,":[245],"also":[247],"highlights":[248],"dataset":[251],"contains":[252],"information":[253],"may":[255,276],"been":[257],"missed":[258],"by":[259],"sources.":[261],"addition":[263],"identification":[266,286],"important":[268],"crop":[269],"enemies,":[274],"be":[277],"used":[278],"variety":[281],"use-cases,":[283],"invasive":[288],"pathogen":[291],"vectors,":[292],"trophic":[293],"network":[294],"analysis":[295],"search":[298],"discovery.":[300]},"counts_by_year":[],"updated_date":"2026-11-07T11:25:07.637180","created_date":"2026-09-29T00:00:00"}
