{"id":"https://openalex.org/W7214294592","doi":"https://doi.org/10.64898/2026.09.21.753266","title":"Diverse genome organization strategies for polysaccharide utilization in the oceans","display_name":"Diverse genome organization strategies for polysaccharide utilization in the oceans","publication_year":2026,"publication_date":"2026-09-25","ids":{"openalex":"https://openalex.org/W7214294592","doi":"https://doi.org/10.64898/2026.09.21.753266","pmid":"https://pubmed.ncbi.nlm.nih.gov/42818234","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13622170"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.21.753266","doi":"https://doi.org/10.64898/2026.09.21.753266","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.21.753266","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/25/2026.09.21.753266.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/25/2026.09.21.753266.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5081075563","display_name":"Aaron Oliver","orcid":"https://orcid.org/0000-0002-0410-8284","observed_orcids":["https://orcid.org/0000-0002-0410-8284"]},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aaron Oliver","raw_affiliation_strings":["Scripps Institution of Oceanography;"],"raw_orcid":"https://orcid.org/0000-0002-0410-8284","affiliations":[{"raw_affiliation_string":"Scripps Institution of Oceanography;","institution_ids":["https://openalex.org/I150209017"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044467135","display_name":"Sheila B. Podell","orcid":"https://orcid.org/0000-0001-7073-5190","observed_orcids":["https://orcid.org/0000-0001-7073-5190"]},"institutions":[{"id":"https://openalex.org/I150209017","display_name":"Scripps Institution of Oceanography","ror":"https://ror.org/04v7hvq31","country_code":"US","type":"facility","lineage":["https://openalex.org/I150209017","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sheila Podell","raw_affiliation_strings":["University of California San Diego Scripps Institution of Oceanography;"],"raw_orcid":"https://orcid.org/0000-0001-7073-5190","affiliations":[{"raw_affiliation_string":"University of California San Diego Scripps Institution of Oceanography;","institution_ids":["https://openalex.org/I150209017","https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049116965","display_name":"Eric E. Allen","orcid":"https://orcid.org/0000-0002-1229-8794","observed_orcids":["https://orcid.org/0000-0002-1229-8794"]},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Eric E Allen","raw_affiliation_strings":["University of California, San Diego"],"raw_orcid":"https://orcid.org/0000-0002-1229-8794","affiliations":[{"raw_affiliation_string":"University of California, San Diego","institution_ids":["https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5049116965"],"corresponding_institution_ids":["https://openalex.org/I36258959"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4027999937534332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.4027999937534332,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.22830000519752502,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11617","display_name":"Enzyme Production and Characterization","score":0.10939999669790268,"subfield":{"id":"https://openalex.org/subfields/1305","display_name":"Biotechnology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/carbohydrate-active-enzymes","display_name":"carbohydrate-active enzymes","score":0.9070000052452087},{"id":"https://openalex.org/keywords/polysaccharide-utilization","display_name":"polysaccharide utilization","score":0.9430000185966492},{"id":"https://openalex.org/keywords/genome-organization","display_name":"genome organization","score":0.5809999704360962},{"id":"https://openalex.org/keywords/enzyme-phylogeny","display_name":"enzyme phylogeny","score":0.8519999980926514},{"id":"https://openalex.org/keywords/polysaccharide-degradation","display_name":"polysaccharide degradation","score":0.7279999852180481}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.614799976348877},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6129000186920166},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5975000262260437},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5629000067710876},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5002999901771545},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.414900004863739},{"id":"https://openalex.org/C3020077223","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomic information","level":4,"score":0.3919000029563904},{"id":"https://openalex.org/C199465337","wikidata":"https://www.wikidata.org/wiki/Q6823168","display_name":"Metaproteomics","level":4,"score":0.38510000705718994},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.3521000146865845},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.34869998693466187},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.3425999879837036},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.3357999920845032},{"id":"https://openalex.org/C150903083","wikidata":"https://www.wikidata.org/wiki/Q7108","display_name":"Biotechnology","level":1,"score":0.29809999465942383},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.2921000123023987},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.27880001068115234},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.27720001339912415},{"id":"https://openalex.org/C192989942","wikidata":"https://www.wikidata.org/wiki/Q68685","display_name":"Metabolic pathway","level":3,"score":0.27619999647140503},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2718999981880188},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.26499998569488525},{"id":"https://openalex.org/C206212055","wikidata":"https://www.wikidata.org/wiki/Q2553138","display_name":"Glycan","level":3,"score":0.26269999146461487},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2581000030040741},{"id":"https://openalex.org/C100817775","wikidata":"https://www.wikidata.org/wiki/Q134219","display_name":"Polysaccharide","level":2,"score":0.2578999996185303},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.2529999911785126},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.250900000333786}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.64898/2026.09.21.753266","doi":"https://doi.org/10.64898/2026.09.21.753266","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.21.753266","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/25/2026.09.21.753266.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42818234","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42818234","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bioRxiv : the preprint server for biology","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13622170","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13622170/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.64898/2026.09.21.753266","doi":"https://doi.org/10.64898/2026.09.21.753266","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.21.753266","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/25/2026.09.21.753266.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Life below water","id":"https://metadata.un.org/sdg/14","score":0.5769000053405762}],"study_designs":[],"awards":[{"id":"https://openalex.org/G242688306","display_name":null,"funder_award_id":"P01-ES035541","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"},{"id":"https://openalex.org/G5819196345","display_name":"MTM 1: Experimental framework for marine fish microbiomes through synthetic communities and multi-omic approaches","funder_award_id":"2025217","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G8821292448","display_name":"Scripps Center for Oceans and Human Health: advancing the science of marine contaminants and seafood security","funder_award_id":"2414798","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306114","display_name":"U.S. Department of Agriculture","ror":"https://ror.org/01na82s61"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320332299","display_name":"National Institute of Food and Agriculture","ror":"https://ror.org/05qx3fv49"},{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7214294592.pdf","grobid_xml":"https://content.openalex.org/works/W7214294592.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W2786672974","https://openalex.org/W2886476927","https://openalex.org/W3200103613","https://openalex.org/W4220935833","https://openalex.org/W4238889778","https://openalex.org/W7204246934"],"related_works":["https://openalex.org/W6927302470","https://openalex.org/W4381511171","https://openalex.org/W4309305886","https://openalex.org/W4400593154","https://openalex.org/W2761566426","https://openalex.org/W2945788150","https://openalex.org/W3039235564","https://openalex.org/W2809881736","https://openalex.org/W3046062877","https://openalex.org/W1999964607"],"abstract_inverted_index":{"Carbohydrate-active":[0],"enzymes":[1],"(CAZymes)":[2],"drive":[3],"the":[4,9,12],"turnover":[5],"of":[6,14],"polysaccharides":[7],"in":[8,16,29,57,91,114],"oceans.":[10],"However,":[11],"scale":[13],"diversity":[15],"polysaccharide":[17],"utilization":[18],"and":[19,52,83,102],"genome":[20,80],"organization":[21,81],"strategies":[22],"has":[23],"yet":[24],"to":[25,99,110],"be":[26],"characterized,":[27],"particularly":[28],"marine":[30,44,58,66,115],"ecosystems.":[31],"In":[32],"this":[33],"paper,":[34],"we":[35],"introduce":[36],"mpcgcdb.com":[37],"as":[38],"an":[39],"interactive":[40],"web":[41],"catalog":[42],"for":[43,79],"CAZyme":[45,67],"gene":[46,68,95],"clusters,":[47],"their":[48],"associated":[49],"metagenome-assembled":[50],"genomes,":[51,74],"relevant":[53],"enzyme":[54,84],"families":[55],"found":[56],"metagenomic":[59],"samples.":[60],"This":[61,86],"database":[62],"contains":[63],"nearly":[64],"290,000":[65],"clusters":[69],"from":[70],"more":[71],"than":[72],"22,000":[73],"enabling":[75],"user-initiated":[76],"exploratory":[77],"visualizations":[78],"networks":[82],"phylogeny.":[85],"tool":[87],"will":[88],"assist":[89],"researchers":[90],"developing":[92],"hypotheses":[93],"about":[94],"function,":[96],"connecting":[97],"species":[98],"metabolic":[100],"niches,":[101],"identifying":[103],"gaps":[104],"where":[105],"future":[106],"work":[107],"is":[108],"needed":[109],"understand":[111],"different":[112],"pathways":[113],"glycan":[116],"cycling.":[117]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-26T00:00:00"}
