{"id":"https://openalex.org/W7214233501","doi":"https://doi.org/10.64898/2026.09.22.753136","title":"Leaf and root microbiome signatures of gray mangrove trees in the Red Sea","display_name":"Leaf and root microbiome signatures of gray mangrove trees in the Red Sea","publication_year":2026,"publication_date":"2026-09-23","ids":{"openalex":"https://openalex.org/W7214233501","doi":"https://doi.org/10.64898/2026.09.22.753136"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.22.753136","doi":"https://doi.org/10.64898/2026.09.22.753136","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.22.753136","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/23/2026.09.22.753136.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/23/2026.09.22.753136.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025998974","display_name":"Diego Javier Jim\u00e9nez","orcid":"https://orcid.org/0000-0002-9339-6520","observed_orcids":["https://orcid.org/0000-0002-9339-6520"]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Diego J Jimenez","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":"https://orcid.org/0000-0002-9339-6520","affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050680337","display_name":"Tahira Jamil","orcid":"https://orcid.org/0000-0001-8754-0605","observed_orcids":["https://orcid.org/0000-0001-8754-0605"]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Tahira Jamil","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049063435","display_name":"Maria Fernanda Pe\u00f1a-Valencia","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Maria F Pena-Valencia","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001363887","display_name":"Hanin Alzubaidy","orcid":"https://orcid.org/0000-0002-3388-4039","observed_orcids":["https://orcid.org/0000-0002-3388-4039"]},"institutions":[{"id":"https://openalex.org/I34403800","display_name":"GEOMAR Helmholtz Centre for Ocean Research Kiel","ror":"https://ror.org/02h2x0161","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I34403800"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Hanin Alzubaidy","raw_affiliation_strings":["GEOMAR Helmholtz Centre for Ocean Research;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"GEOMAR Helmholtz Centre for Ocean Research;","institution_ids":["https://openalex.org/I34403800"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5098931401","display_name":"Azad Baazeem","orcid":"https://orcid.org/0000-0003-0515-5047","observed_orcids":["https://orcid.org/0000-0003-0515-5047"]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Azad Baazeem","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152728704","display_name":"Kaitlyn O'Toole","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Kaitlyn O'Toole","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091528425","display_name":"Lucas William Mendes","orcid":"https://orcid.org/0000-0003-0980-7006","observed_orcids":["https://orcid.org/0000-0003-0980-7006"]},"institutions":[{"id":"https://openalex.org/I17974374","display_name":"Universidade de S\u00e3o Paulo","ror":"https://ror.org/036rp1748","country_code":"BR","type":"education","lineage":["https://openalex.org/I17974374"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Lucas W Mendes","raw_affiliation_strings":["University of Sao Paulo"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Sao Paulo","institution_ids":["https://openalex.org/I17974374"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133466599","display_name":"Susana Carvalho","orcid":"https://orcid.org/0000-0003-1300-1953","observed_orcids":["https://orcid.org/0000-0003-1300-1953"]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Susana Carvalho","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5025844761","display_name":"Alexandre Soares Rosado","orcid":"https://orcid.org/0000-0001-5135-1394","observed_orcids":["https://orcid.org/0000-0001-5135-1394"]},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":true,"raw_author_name":"Alexandre S Rosado","raw_affiliation_strings":["King Abdullah University of Science and Technology;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"King Abdullah University of Science and Technology;","institution_ids":["https://openalex.org/I71920554"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5025844761","https://openalex.org/A5025998974"],"corresponding_institution_ids":["https://openalex.org/I71920554"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.7896000146865845,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.7896000146865845,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.1264999955892563,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10779","display_name":"Coastal wetland ecosystem dynamics","score":0.05900000035762787,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/rhizophora-mucronata","display_name":"Rhizophora mucronata","score":0.6579999923706055},{"id":"https://openalex.org/keywords/mangrove-microbiome","display_name":"mangrove microbiome","score":0.7269999980926514},{"id":"https://openalex.org/keywords/phyllosphere","display_name":"phyllosphere","score":0.8510000109672546},{"id":"https://openalex.org/keywords/root-microbiome","display_name":"root microbiome","score":0.8600000143051147},{"id":"https://openalex.org/keywords/microbial-community-assembly","display_name":"microbial community assembly","score":0.9620000123977661},{"id":"https://openalex.org/keywords/rhodopsin","display_name":"rhodopsin","score":0.7329999804496765},{"id":"https://openalex.org/keywords/polysaccharide-degrading-enzymes","display_name":"polysaccharide-degrading enzymes","score":0.9559999704360962},{"id":"https://openalex.org/keywords/gaba","display_name":"GABA","score":0.984000027179718},{"id":"https://openalex.org/keywords/salt-tolerance","display_name":"salt tolerance","score":0.8679999709129333},{"id":"https://openalex.org/keywords/desulfobacterales","display_name":"Desulfobacterales","score":0.9750000238418579},{"id":"https://openalex.org/keywords/sulfur-cycling","display_name":"sulfur cycling","score":0.8870000243186951},{"id":"https://openalex.org/keywords/nitrogen-cycle","display_name":"nitrogen cycling","score":0.9860000014305115},{"id":"https://openalex.org/keywords/blue-carbon","display_name":"blue carbon","score":0.6209999918937683},{"id":"https://openalex.org/keywords/red-sea","display_name":"Red Sea","score":0.5249999761581421}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8378999829292297},{"id":"https://openalex.org/C68874143","wikidata":"https://www.wikidata.org/wiki/Q19756","display_name":"Mangrove","level":2,"score":0.8095999956130981},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.6270999908447266},{"id":"https://openalex.org/C143121216","wikidata":"https://www.wikidata.org/wiki/Q1330402","display_name":"Microbiome","level":2,"score":0.6189000010490417},{"id":"https://openalex.org/C205626393","wikidata":"https://www.wikidata.org/wiki/Q2089263","display_name":"Phyllosphere","level":3,"score":0.47540000081062317},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.45660001039505005},{"id":"https://openalex.org/C47559259","wikidata":"https://www.wikidata.org/wiki/Q778143","display_name":"Biological dispersal","level":3,"score":0.42160001397132874},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.41019999980926514},{"id":"https://openalex.org/C193950572","wikidata":"https://www.wikidata.org/wiki/Q1065886","display_name":"Aerial root","level":3,"score":0.39079999923706055},{"id":"https://openalex.org/C71640776","wikidata":"https://www.wikidata.org/wiki/Q16521","display_name":"Taxon","level":2,"score":0.37439998984336853},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.3499999940395355},{"id":"https://openalex.org/C2781307776","wikidata":"https://www.wikidata.org/wiki/Q853914","display_name":"Rhizophora mangle","level":3,"score":0.32659998536109924},{"id":"https://openalex.org/C67905577","wikidata":"https://www.wikidata.org/wiki/Q215980","display_name":"Ribosomal RNA","level":3,"score":0.32510000467300415},{"id":"https://openalex.org/C137858568","wikidata":"https://www.wikidata.org/wiki/Q7239","display_name":"Organism","level":2,"score":0.3230000138282776},{"id":"https://openalex.org/C42062724","wikidata":"https://www.wikidata.org/wiki/Q1209205","display_name":"16S ribosomal RNA","level":3,"score":0.3222000002861023},{"id":"https://openalex.org/C102715595","wikidata":"https://www.wikidata.org/wiki/Q172861","display_name":"Ecological niche","level":3,"score":0.3197999894618988},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3118000030517578},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3009999990463257},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.2883000075817108},{"id":"https://openalex.org/C132215390","wikidata":"https://www.wikidata.org/wiki/Q461335","display_name":"Abiotic component","level":2,"score":0.2849999964237213},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.27390000224113464},{"id":"https://openalex.org/C69562835","wikidata":"https://www.wikidata.org/wiki/Q3054637","display_name":"Microbial ecology","level":3,"score":0.26919999718666077},{"id":"https://openalex.org/C153991713","wikidata":"https://www.wikidata.org/wiki/Q17142856","display_name":"Niche","level":2,"score":0.26899999380111694},{"id":"https://openalex.org/C81407943","wikidata":"https://www.wikidata.org/wiki/Q17149178","display_name":"Microbial population biology","level":3,"score":0.265500009059906},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.2624000012874603},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.260699987411499}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.22.753136","doi":"https://doi.org/10.64898/2026.09.22.753136","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.22.753136","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/23/2026.09.22.753136.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.22.753136","doi":"https://doi.org/10.64898/2026.09.22.753136","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.22.753136","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/23/2026.09.22.753136.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G1242519924","display_name":null,"funder_award_id":"BAS/1/109601-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7214233501.pdf","grobid_xml":"https://content.openalex.org/works/W7214233501.grobid-xml"},"referenced_works_count":6,"referenced_works":["https://openalex.org/W3027039469","https://openalex.org/W3093903738","https://openalex.org/W4414751917","https://openalex.org/W6925776100","https://openalex.org/W7119538688","https://openalex.org/W7155411170"],"related_works":["https://openalex.org/W2104179893","https://openalex.org/W3184709728","https://openalex.org/W7134172950","https://openalex.org/W6927128176","https://openalex.org/W4309648549","https://openalex.org/W3101795692","https://openalex.org/W4386438223","https://openalex.org/W4403515019","https://openalex.org/W2071559722","https://openalex.org/W7213986418"],"abstract_inverted_index":{"Mangroves":[0],"persist":[1],"under":[2],"strong":[3],"environmental":[4],"constraints":[5],"with":[6,34,49,85,109,131,143],"support":[7],"from":[8,134],"microbes.":[9],"Although":[10],"microbial":[11,46,74,156],"communities":[12,47],"differ":[13],"among":[14],"mangrove":[15,56,160],"compartments,":[16],"their":[17,173],"assembly":[18,76],"mechanisms":[19],"and":[20,40,52,67,96,111,120,169],"compartment-specific":[21],"functional":[22],"signatures":[23],"remain":[24],"poorly":[25],"resolved.":[26],"Here,":[27],"we":[28],"combine":[29],"peptide":[30],"nucleic":[31],"acid-clamping":[32],"coupled":[33],"16S":[35],"rRNA":[36],"gene":[37],"amplicon":[38],"sequencing":[39],"genome-resolved":[41],"metagenomics":[42],"to":[43,104],"investigate":[44],"the":[45,50,59,155,166],"associated":[48],"leaves":[51],"roots":[53],"of":[54,73,87,140,158,172],"gray":[55,159],"trees":[57],"in":[58,77,126],"Red":[60],"Sea.":[61],"Our":[62],"results":[63],"suggest":[64],"homogeneous":[65],"selection":[66,139],"homogenizing":[68],"dispersal":[69],"as":[70,124],"key":[71],"processes":[72],"community":[75],"leaves.":[78],"This":[79],"phyllosphere":[80],"hosts":[81],"novel":[82],"prokaryotic":[83],"lineages,":[84],"some":[86],"its":[88],"members":[89],"probably":[90],"synthesizing":[91],"rhodopsins,":[92],"plant":[93],"polysaccharide-degrading":[94],"enzymes,":[95],"gamma-aminobutyric":[97],"acid,":[98],"a":[99,137],"metabolite":[100],"that":[101],"increase":[102],"tolerance":[103],"salinity":[105],"stress.":[106],"Genomes":[107],"affiliated":[108],"Desulfobacterales":[110],"Sedimenticolaceae":[112,141],"taxa":[113],"are":[114],"abundant":[115],"belowground,":[116],"suggesting":[117],"complementary":[118],"sulfur-":[119],"nitrogen-cycling":[121],"capacities":[122],"similar":[123],"occur":[125],"other":[127],"blue-carbon":[128],"ecosystems.":[129],"Comparison":[130],"root-derived":[132],"genomes":[133],"cordgrass":[135],"revealed":[136],"host-driven":[138],"species":[142],"convergent":[144],"metabolic":[145],"profiles.":[146],"Overall,":[147],"this":[148],"study":[149],"provides":[150],"an":[151],"integrative":[152],"view":[153],"about":[154],"biology":[157],"trees,":[161],"offering":[162],"foundational":[163],"insights":[164],"into":[165],"diversity,":[167],"ecology,":[168],"predictive":[170],"functionality":[171],"aboveground-belowground":[174],"microbiomes.":[175]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-25T00:00:00"}