{"id":"https://openalex.org/W7214196201","doi":"https://doi.org/10.1016/j.xgen.2026.101366","title":"MOSHPIT: Accessible, reproducible metagenome data science on the QIIME 2 framework","display_name":"MOSHPIT: Accessible, reproducible metagenome data science on the QIIME 2 framework","publication_year":2026,"publication_date":"2026-09-24","ids":{"openalex":"https://openalex.org/W7214196201","doi":"https://doi.org/10.1016/j.xgen.2026.101366","pmid":"https://pubmed.ncbi.nlm.nih.gov/39975011","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/11838374"},"language":"en","primary_location":{"id":"doi:10.1016/j.xgen.2026.101366","doi":"https://doi.org/10.1016/j.xgen.2026.101366","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.xgen.2026.101366","pdf_url":null,"source":{"id":"https://openalex.org/S4210194377","display_name":"Cell Genomics","issn_l":"2666-979X","issn":["2666-979X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-20","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Genomics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.xgen.2026.101366","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037922055","display_name":"Micha\u0142 Ziemski","orcid":"https://orcid.org/0000-0001-6285-8852","observed_orcids":["https://orcid.org/0000-0001-6285-8852"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Michal Ziemski","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-6285-8852","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114655557","display_name":"Liz Gehret","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Liz Gehret","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063248598","display_name":"Anthony Simard","orcid":"https://orcid.org/0000-0002-7394-1616","observed_orcids":["https://orcid.org/0000-0002-7394-1616"]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Anthony Simard","raw_affiliation_strings":["Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116060144","display_name":"Santiago Castro Dau","orcid":"https://orcid.org/0009-0004-3537-574X","observed_orcids":["https://orcid.org/0009-0004-3537-574X"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Santiago Castro Dau","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0009-0004-3537-574X","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116060145","display_name":"Vinzent Risch","orcid":"https://orcid.org/0009-0002-3904-9218","observed_orcids":["https://orcid.org/0009-0002-3904-9218"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Vinzent Risch","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0009-0002-3904-9218","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116060146","display_name":"Doriela Grabocka","orcid":"https://orcid.org/0009-0005-3731-8199","observed_orcids":["https://orcid.org/0009-0005-3731-8199"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Doriela Grabocka","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0009-0005-3731-8199","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126507132","display_name":"Christos Konstantinos Matzoros","orcid":"https://orcid.org/0009-0006-9575-8130","observed_orcids":["https://orcid.org/0009-0006-9575-8130"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Christos Matzoros","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0009-0006-9575-8130","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054876367","display_name":"Colin Wood","orcid":"https://orcid.org/0000-0002-8066-3466","observed_orcids":["https://orcid.org/0000-0002-8066-3466"]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin Wood","raw_affiliation_strings":["Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA"],"raw_orcid":"https://orcid.org/0000-0002-8066-3466","affiliations":[{"raw_affiliation_string":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069862748","display_name":"Paula Momo Cabrera","orcid":"https://orcid.org/0000-0002-6450-3075","observed_orcids":["https://orcid.org/0000-0002-6450-3075"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Paula Momo Cabrera","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108127781","display_name":"Rodrigo Hern\u00e1ndez-Vel\u00e1zquez","orcid":"https://orcid.org/0009-0009-3048-8573","observed_orcids":["https://orcid.org/0009-0009-3048-8573"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Rodrigo Hern\u00e1ndez-Vel\u00e1zquez","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109618798","display_name":"Milo R. Sch\u00e4rer","orcid":"https://orcid.org/0000-0002-8703-0303","observed_orcids":["https://orcid.org/0000-0002-8703-0303"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Milo R. Sch\u00e4rer","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":"https://orcid.org/0000-0002-8703-0303","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124226459","display_name":"Felicia Sandberg","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Felicia Sandberg","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136669216","display_name":"Chloe Herman","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chloe Herman","raw_affiliation_strings":["Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124254835","display_name":"Keegan Evans","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keegan Evans","raw_affiliation_strings":["Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA","institution_ids":["https://openalex.org/I203172682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028011279","display_name":"Michael Scott Robeson","orcid":"https://orcid.org/0000-0001-7119-6301","observed_orcids":["https://orcid.org/0000-0001-7119-6301"]},"institutions":[{"id":"https://openalex.org/I79620101","display_name":"University of Arkansas for Medical Sciences","ror":"https://ror.org/00xcryt71","country_code":"US","type":"education","lineage":["https://openalex.org/I79620101"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael S. Robeson","raw_affiliation_strings":["University of Arkansas for Medical Sciences, Department of Biomedical Informatics, Little Rock, AR 72205, USA"],"raw_orcid":"https://orcid.org/0000-0001-7119-6301","affiliations":[{"raw_affiliation_string":"University of Arkansas for Medical Sciences, Department of Biomedical Informatics, Little Rock, AR 72205, USA","institution_ids":["https://openalex.org/I79620101"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120663645","display_name":"Evan Bolyen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Evan Bolyen","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland","institution_ids":["https://openalex.org/I35440088"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038626201","display_name":"J. Gregory Caporaso","orcid":"https://orcid.org/0000-0002-8865-1670","observed_orcids":["https://orcid.org/0000-0002-8865-1670"]},"institutions":[{"id":"https://openalex.org/I1284308235","display_name":"Translational Genomics Research Institute","ror":"https://ror.org/02hfpnk21","country_code":"US","type":"facility","lineage":["https://openalex.org/I1284308235"]},{"id":"https://openalex.org/I203172682","display_name":"Northern Arizona University","ror":"https://ror.org/0272j5188","country_code":"US","type":"education","lineage":["https://openalex.org/I203172682"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"J. Gregory Caporaso","raw_affiliation_strings":["Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA; Translational Genomics Research Institute, Flagstaff, AZ 86011, USA"],"raw_orcid":"https://orcid.org/0000-0002-8865-1670","affiliations":[{"raw_affiliation_string":"Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ 86011, USA; Translational Genomics Research Institute, Flagstaff, AZ 86011, USA","institution_ids":["https://openalex.org/I1284308235","https://openalex.org/I203172682"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000165682","display_name":"Nicholas A. Bokulich","orcid":"https://orcid.org/0000-0002-1784-8935","observed_orcids":["https://orcid.org/0000-0002-1784-8935"]},"institutions":[{"id":"https://openalex.org/I35440088","display_name":"ETH Zurich","ror":"https://ror.org/05a28rw58","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I35440088"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Nicholas A. Bokulich","raw_affiliation_strings":["Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland. Electronic address: nicholas.bokulich@hest.ethz.ch"],"raw_orcid":"https://orcid.org/0000-0002-1784-8935","affiliations":[{"raw_affiliation_string":"Department of Health Sciences and Technology, ETH Zurich, 8092 Zurich, Switzerland. Electronic address: nicholas.bokulich@hest.ethz.ch","institution_ids":["https://openalex.org/I35440088"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5000165682"],"corresponding_institution_ids":["https://openalex.org/I35440088"],"apc_list":{"value":8900,"currency":"USD","value_usd":8900},"apc_paid":{"value":8900,"currency":"USD","value_usd":8900},"fwci":10.2232,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.9879082,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":95,"max":99},"biblio":{"volume":"6","issue":"10","first_page":"101366","last_page":"101366"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9437999725341797,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9437999725341797,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.04749999940395355,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.0020000000949949026,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/metagenomics","display_name":"metagenomics","score":0.7409999966621399},{"id":"https://openalex.org/keywords/qiime2","display_name":"QIIME2","score":0.9620000123977661},{"id":"https://openalex.org/keywords/reproducible-data-analysis","display_name":"reproducible data analysis","score":0.6159999966621399},{"id":"https://openalex.org/keywords/metagenome-assembled-genomes","display_name":"metagenome-assembled genomes","score":0.6729999780654907}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5580999851226807},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.44179999828338623},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.4178999960422516},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.35670000314712524},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.31279999017715454},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.3075999915599823},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.28859999775886536},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2842999994754791},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.2797999978065491},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.2685999870300293}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1016/j.xgen.2026.101366","doi":"https://doi.org/10.1016/j.xgen.2026.101366","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.xgen.2026.101366","pdf_url":null,"source":{"id":"https://openalex.org/S4210194377","display_name":"Cell Genomics","issn_l":"2666-979X","issn":["2666-979X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-20","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Genomics","raw_type":"journal-article"},{"id":"doi:10.1101/2025.01.27.635007","doi":"https://doi.org/10.1101/2025.01.27.635007","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.01.27.635007","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:13689502","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13689502/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13689502/pdf/main.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Genom","raw_type":"Text"},{"id":"pmid:39975011","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39975011","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"bioRxiv : the preprint server for biology","raw_type":"Journal Article"},{"id":"pmid:42785295","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42785295","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell genomics","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:11838374","doi":null,"is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/11838374","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"Text"},{"id":"pmh:oai:doaj.org/article:efbce9a0237742ab8ab7d47e75d9c83e","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/efbce9a0237742ab8ab7d47e75d9c83e","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cell Genomics, Vol 6, Iss 10, Pp 101366- (2026)","raw_type":"article"},{"id":"pmh:oai:www.research-collection.ethz.ch:20.500.11850/807720","doi":null,"is_oa":true,"landing_page_url":"http://hdl.handle.net/20.500.11850/807720","pdf_url":null,"source":{"id":"https://openalex.org/S4306402302","display_name":"Repository for Publications and Research Data (ETH Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I35440088","host_organization_name":"ETH Zurich","host_organization_lineage":["https://openalex.org/I35440088"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cell Genomics","raw_type":"info:eu-repo/semantics/article"},{"id":"doi:10.3929/ethz-c-000807720","doi":"https://doi.org/10.3929/ethz-c-000807720","is_oa":true,"landing_page_url":"https://doi.org/10.3929/ethz-c-000807720","pdf_url":null,"source":{"id":"https://openalex.org/S7407051236","display_name":"ETH Z\u00fcrich Research Collection","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Other"}],"best_oa_location":{"id":"doi:10.1016/j.xgen.2026.101366","doi":"https://doi.org/10.1016/j.xgen.2026.101366","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.xgen.2026.101366","pdf_url":null,"source":{"id":"https://openalex.org/S4210194377","display_name":"Cell Genomics","issn_l":"2666-979X","issn":["2666-979X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-1","ki-jl-1","medline","norway-1","oarl","poland-20","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Cell Genomics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G463748041","display_name":"Advanced Development of Informatics Technologies for Cancer Research and Management (U24 Clinical Trial Optional)","funder_award_id":"U24CA248454","funder_id":"https://openalex.org/F4320337351","funder_display_name":"National Cancer Institute"},{"id":"https://openalex.org/G7714909483","display_name":null,"funder_award_id":"10008221","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320306192","display_name":"Silicon Valley Community Foundation","ror":"https://ror.org/001ader08"},{"id":"https://openalex.org/F4320315474","display_name":"Chan Zuckerberg Initiative","ror":"https://ror.org/02qenvm24"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320331149","display_name":"Board of the Swiss Federal Institutes of Technology","ror":"https://ror.org/01rvn4p91"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7214196201.pdf","grobid_xml":"https://content.openalex.org/works/W7214196201.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1568043102","https://openalex.org/W1999113425","https://openalex.org/W2063890406","https://openalex.org/W2113679889","https://openalex.org/W2130731460","https://openalex.org/W2151409320","https://openalex.org/W2163250554","https://openalex.org/W2170551349","https://openalex.org/W2175526948","https://openalex.org/W2337747100","https://openalex.org/W2345658906","https://openalex.org/W2599417231","https://openalex.org/W2754579667","https://openalex.org/W2807194798","https://openalex.org/W2914932343","https://openalex.org/W2938868597","https://openalex.org/W2943761765","https://openalex.org/W2949841808","https://openalex.org/W2951912016","https://openalex.org/W2955167895","https://openalex.org/W2963276645","https://openalex.org/W2990427812","https://openalex.org/W2990618091","https://openalex.org/W3025757981","https://openalex.org/W3038374326","https://openalex.org/W3048454272","https://openalex.org/W3118724893","https://openalex.org/W3119853034","https://openalex.org/W3168040031","https://openalex.org/W3170689505","https://openalex.org/W3190196859","https://openalex.org/W4200564640","https://openalex.org/W4212782842","https://openalex.org/W4225258284","https://openalex.org/W4296577759","https://openalex.org/W4306871314","https://openalex.org/W4310663915","https://openalex.org/W4376133202","https://openalex.org/W4381547687","https://openalex.org/W4386923503","https://openalex.org/W4389042312","https://openalex.org/W4390403217"],"related_works":["https://openalex.org/W6977036735","https://openalex.org/W4242789727","https://openalex.org/W7123716872","https://openalex.org/W4411695985","https://openalex.org/W6921387700","https://openalex.org/W4362736020","https://openalex.org/W4396571222","https://openalex.org/W7164350129","https://openalex.org/W2565488022","https://openalex.org/W3172705636"],"abstract_inverted_index":{"Metagenome":[0],"sequencing":[1],"has":[2],"revolutionized":[3],"functional":[4],"microbiome":[5],"analysis":[6,46],"across":[7],"diverse":[8],"ecosystems,":[9],"but":[10],"is":[11],"fraught":[12],"with":[13,34],"technical":[14],"hurdles.":[15],"We":[16],"introduce":[17],"MOSHPIT":[18,55],"(https://moshpit.readthedocs.io),":[19],"software":[20],"built":[21],"on":[22,53],"the":[23,69],"QIIME":[24],"2":[25],"framework":[26],"(Q2F)":[27],"that":[28],"integrates":[29],"best-in-class":[30],"CAMI2-validated":[31],"metagenome":[32,45],"tools":[33],"robust":[35],"provenance":[36],"tracking":[37],"and":[38,59,65],"multiple":[39],"user":[40],"interfaces,":[41],"enabling":[42],"streamlined,":[43],"reproducible":[44],"for":[47],"all":[48],"expertise":[49],"levels.":[50],"By":[51],"building":[52],"Q2F,":[54],"enhances":[56],"scalability,":[57],"interoperability,":[58],"reproducibility":[60],"in":[61],"complex":[62],"workflows,":[63],"democratizing":[64],"accelerating":[66],"discovery":[67],"at":[68],"frontiers":[70],"of":[71],"metagenomics.":[72]},"counts_by_year":[{"year":2026,"cited_by_count":7},{"year":2025,"cited_by_count":3}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-25T00:00:00"}