{"id":"https://openalex.org/W7213499243","doi":"https://doi.org/10.64898/2026.09.15.751352","title":"PlantRegMoD: An integrative and AI-driven multi-omics database for plant regeneration research","display_name":"PlantRegMoD: An integrative and AI-driven multi-omics database for plant regeneration research","publication_year":2026,"publication_date":"2026-09-17","ids":{"openalex":"https://openalex.org/W7213499243","doi":"https://doi.org/10.64898/2026.09.15.751352"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.15.751352","doi":"https://doi.org/10.64898/2026.09.15.751352","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751352","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/17/2026.09.15.751352.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/17/2026.09.15.751352.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5152031634","display_name":"Yue-Min Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yue-Min Li","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152036583","display_name":"You-Bin Ma","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"You-Bin Ma","raw_affiliation_strings":["Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5141329266","display_name":"Le-Yue Gui","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le-Yue Gui","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018163158","display_name":"Yi Tang","orcid":"https://orcid.org/0000-0002-3561-8447","observed_orcids":["https://orcid.org/0000-0002-3561-8447"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Tang","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135928515","display_name":"Caihong Meng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Caihong Meng","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152006162","display_name":"Yuxin Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuxin Li","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5124332643","display_name":"Li Yao","orcid":"https://orcid.org/0000-0003-2827-8824","observed_orcids":["https://orcid.org/0000-0003-2827-8824"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Li Yao","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100716361","display_name":"Jixiang Zhang","orcid":"https://orcid.org/0000-0002-1641-8650","observed_orcids":["https://orcid.org/0000-0002-1641-8650"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jixiang Zhang","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011382701","display_name":"Siwei Xia","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Siwei Xia","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123386230","display_name":"Youhao Peng","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Youhao Peng","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089400367","display_name":"Shipeng Song","orcid":"https://orcid.org/0000-0002-4236-8263","observed_orcids":["https://orcid.org/0000-0002-4236-8263"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shipeng Song","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0002-4236-8263","affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5000343000","display_name":"Zhebin Zeng","orcid":"https://orcid.org/0000-0001-7035-3926","observed_orcids":["https://orcid.org/0000-0001-7035-3926"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhebin Zeng","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108333546","display_name":"Jia-Bao He","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jia-Bao He","raw_affiliation_strings":["Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5152018029","display_name":"Na Zhang","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Na Zhang","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5095036913","display_name":"Pei-Xuan Xiao","orcid":"https://orcid.org/0009-0009-2646-3699","observed_orcids":["https://orcid.org/0009-0009-2646-3699"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pei-Xuan Xiao","raw_affiliation_strings":["Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5157820013","display_name":"Yuming Xu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuming Xu","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102533150","display_name":"Lei Tan","orcid":"https://orcid.org/0009-0000-3761-7731","observed_orcids":["https://orcid.org/0009-0000-3761-7731","https://orcid.org/0009-0000-0820-0152"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lei Tan","raw_affiliation_strings":["Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045354475","display_name":"Akira Iwase","orcid":"https://orcid.org/0000-0003-3294-7939","observed_orcids":["https://orcid.org/0000-0003-3294-7939"]},"institutions":[{"id":"https://openalex.org/I4210100240","display_name":"RIKEN Center for Sustainable Resource Science","ror":"https://ror.org/010rf2m76","country_code":"JP","type":"facility","lineage":["https://openalex.org/I4210100240","https://openalex.org/I4210110652"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Akira Iwase","raw_affiliation_strings":["RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RIKEN Center for Sustainable Resource Science, Yokohama 230-0045, Japan","institution_ids":["https://openalex.org/I4210100240"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5151999402","display_name":"Chunli Chen","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chunli Chen","raw_affiliation_strings":["College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","Hubei Hongshan Laboratory, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Life Science and Technology, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002532164","display_name":"Wen\u2010Biao Jiao","orcid":"https://orcid.org/0000-0001-8355-2959","observed_orcids":["https://orcid.org/0000-0001-8355-2959"]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wen-Biao Jiao","raw_affiliation_strings":["Hubei Hongshan Laboratory, Wuhan 430070, China","Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China"],"raw_orcid":"https://orcid.org/0000-0001-8355-2959","affiliations":[{"raw_affiliation_string":"Hubei Hongshan Laboratory, Wuhan 430070, China","institution_ids":[]},{"raw_affiliation_string":"Hubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"National Key Laboratory for Germplasm Innovation and Utilization of Horticultural Crops, Huazhong Agricultural University, Wuhan 430070, China","institution_ids":["https://openalex.org/I204823248"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002532164"],"corresponding_institution_ids":["https://openalex.org/I204823248"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.7099999785423279,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10184","display_name":"Plant Molecular Biology Research","score":0.7099999785423279,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10240","display_name":"Plant tissue culture and regeneration","score":0.21789999306201935,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.019300000742077827,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plant-regeneration","display_name":"plant regeneration","score":0.9789999723434448},{"id":"https://openalex.org/keywords/multi-omics-database","display_name":"multi-omics database","score":0.9700000286102295},{"id":"https://openalex.org/keywords/regeneration-model","display_name":"regeneration model","score":0.6449999809265137},{"id":"https://openalex.org/keywords/transcriptomics","display_name":"transcriptomics","score":0.890999972820282},{"id":"https://openalex.org/keywords/single-cell-transcriptomics","display_name":"single-cell transcriptomics","score":0.8529999852180481},{"id":"https://openalex.org/keywords/cell-heterogeneity","display_name":"cellular heterogeneity","score":0.9319999814033508},{"id":"https://openalex.org/keywords/epigenetic-regulation","display_name":"epigenetic regulation","score":0.9300000071525574},{"id":"https://openalex.org/keywords/tissue-culture","display_name":"tissue culture","score":0.7360000014305115},{"id":"https://openalex.org/keywords/genetic-transformation","display_name":"genetic transformation","score":0.8080000281333923},{"id":"https://openalex.org/keywords/crop-improvement","display_name":"crop improvement","score":0.9139999747276306}],"concepts":[{"id":"https://openalex.org/C171056886","wikidata":"https://www.wikidata.org/wiki/Q193119","display_name":"Regeneration (biology)","level":2,"score":0.7032999992370605},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6385999917984009},{"id":"https://openalex.org/C41091548","wikidata":"https://www.wikidata.org/wiki/Q26939","display_name":"Epigenetics","level":3,"score":0.4724000096321106},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4187999963760376},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4147000014781952},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.38909998536109924},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3864000141620636},{"id":"https://openalex.org/C204241405","wikidata":"https://www.wikidata.org/wiki/Q461499","display_name":"Transformation (genetics)","level":3,"score":0.3425999879837036},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.3181000053882599},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.31220000982284546},{"id":"https://openalex.org/C2985179745","wikidata":"https://www.wikidata.org/wiki/Q131449","display_name":"Plant species","level":2,"score":0.2971999943256378},{"id":"https://openalex.org/C2994352824","wikidata":"https://www.wikidata.org/wiki/Q51969195","display_name":"Genetic resources","level":2,"score":0.2833999991416931},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.2720000147819519},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2660999894142151},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2535000145435333}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.15.751352","doi":"https://doi.org/10.64898/2026.09.15.751352","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751352","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/17/2026.09.15.751352.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.15.751352","doi":"https://doi.org/10.64898/2026.09.15.751352","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751352","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/17/2026.09.15.751352.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G5899166630","display_name":null,"funder_award_id":"2024YFE0102300","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"}],"funders":[{"id":"https://openalex.org/F4320324775","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320338090","display_name":"National Institute for Basic Biology","ror":"https://ror.org/05q8wtt20"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7213499243.pdf","grobid_xml":"https://content.openalex.org/works/W7213499243.grobid-xml"},"referenced_works_count":2,"referenced_works":["https://openalex.org/W3027879771","https://openalex.org/W4399837985"],"related_works":["https://openalex.org/W4283026447","https://openalex.org/W7220115080","https://openalex.org/W2296778941","https://openalex.org/W3202053084","https://openalex.org/W2973052603","https://openalex.org/W4405738414","https://openalex.org/W2077438398","https://openalex.org/W4247848240","https://openalex.org/W4386529318","https://openalex.org/W4415967230"],"abstract_inverted_index":{"Abstract":[0],"Plant":[1],"regeneration":[2,74,79,99],"underpins":[3],"plant":[4,41,56,90,150],"developmental":[5],"plasticity,":[6],"tissue":[7],"culture,":[8],"genetic":[9],"transformation":[10],"and":[11,58,72,76,106,116,126,137,146],"crop":[12],"improvement.":[13],"Although":[14],"numerous":[15],"related":[16],"omics":[17],"datasets":[18],"have":[19],"been":[20],"generated,":[21],"specialized":[22],"multi-omics":[23,49],"databases":[24],"for":[25,143],"this":[26],"field":[27],"are":[28],"still":[29],"scarce.":[30],"Here,":[31],"we":[32],"constructed":[33],"PlantRegMoD,":[34],"an":[35],"AI-powered":[36],"integrated":[37],"database":[38],"dedicated":[39],"to":[40,112],"regeneration.":[42,151],"This":[43],"platform":[44],"hosts":[45],"20.54":[46],"TB":[47],"standardized":[48],"data":[50],"from":[51],"147":[52],"projects":[53],"across":[54,87,97],"32":[55],"species":[57],"2,593":[59],"samples.":[60],"We":[61],"established":[62],"a":[63,127,140],"unified":[64],"hierarchical":[65],"classification":[66],"system":[67],"covering":[68],"five":[69],"major":[70],"categories":[71],"nine":[73,122],"models,":[75,100],"curated":[77],"236":[78],"genes":[80],"as":[81,83,139],"well":[82],"their":[84],"28,190":[85],"homologs":[86],"58":[88],"representative":[89],"species.":[91],"It":[92],"contains":[93],"extensive":[94],"transcriptomic":[95],"resources":[96],"all":[98],"together":[101],"with":[102,121],"196,423":[103],"single":[104],"cells":[105],"over":[107],"8.81":[108],"million":[109],"epigenetic":[110,118],"peaks":[111],"dissect":[113],"cellular":[114],"heterogeneity":[115],"multi-layered":[117],"regulation.":[119],"Equipped":[120],"online":[123],"omics-related":[124],"tools":[125],"RAG-based":[128],"intelligent":[129],"Q&A":[130],"system,":[131],"PlantRegMoD":[132],"greatly":[133],"reduces":[134],"bioinformatic":[135],"barriers":[136],"serves":[138],"robust":[141],"resource":[142],"mechanistic,":[144],"functional":[145],"evolutionary":[147],"studies":[148],"of":[149]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-18T00:00:00"}