{"id":"https://openalex.org/W7213469037","doi":"https://doi.org/10.64898/2026.09.15.751538","title":"The Cretan Carob Virome","display_name":"The Cretan Carob Virome","publication_year":2026,"publication_date":"2026-09-16","ids":{"openalex":"https://openalex.org/W7213469037","doi":"https://doi.org/10.64898/2026.09.15.751538"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.15.751538","doi":"https://doi.org/10.64898/2026.09.15.751538","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751538","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751538.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751538.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5040596947","display_name":"\u039a\u03c9\u03bd\u03c3\u03c4\u03b1\u03bd\u03c4\u03af\u03bd\u03b1 \u039a\u03b1\u03c4\u03c3\u03b1\u03c1\u03bf\u03cd","orcid":"https://orcid.org/0000-0003-2728-443X","observed_orcids":["https://orcid.org/0000-0003-2728-443X"]},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":true,"raw_author_name":"Konstantina Katsarou","raw_affiliation_strings":["Department of Biology, University of Crete, Vassilika Vouton, Heraklion, Crete, Greece","Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece"],"raw_orcid":"https://orcid.org/0000-0003-2728-443X","affiliations":[{"raw_affiliation_string":"Department of Biology, University of Crete, Vassilika Vouton, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5151930843","display_name":"Maria Eleni Biti","orcid":"https://orcid.org/0009-0008-1706-8745","observed_orcids":["https://orcid.org/0009-0008-1706-8745"]},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Maria-Eleni Biti","raw_affiliation_strings":["Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece"],"raw_orcid":"https://orcid.org/0009-0008-1706-8745","affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5151935873","display_name":"Androniki Foteinou","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Androniki Foteinou","raw_affiliation_strings":["Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104667747","display_name":"George Papagiannakis","orcid":"https://orcid.org/0009-0004-3349-1958","observed_orcids":["https://orcid.org/0009-0004-3349-1958"]},"institutions":[{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"George Papagiannakis","raw_affiliation_strings":["Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119589123","display_name":"Despina Michelaki","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Despina Michelaki","raw_affiliation_strings":["Department of Economics, University of Crete, Gallos Campus, Rethymno, Crete, Greece"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Economics, University of Crete, Gallos Campus, Rethymno, Crete, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039835344","display_name":"Christos Andronis","orcid":"https://orcid.org/0000-0002-6174-579X","observed_orcids":["https://orcid.org/0000-0002-6174-579X"]},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Christos Andronis","raw_affiliation_strings":["Department of Biology, University of Crete, Vassilika Vouton, Heraklion, Crete, Greece"],"raw_orcid":"https://orcid.org/0000-0002-6174-579X","affiliations":[{"raw_affiliation_string":"Department of Biology, University of Crete, Vassilika Vouton, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011079183","display_name":"Grigorios Emvalomatis","orcid":"https://orcid.org/0000-0001-8727-5151","observed_orcids":["https://orcid.org/0000-0001-8727-5151"]},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Grigorios Emvalomatis","raw_affiliation_strings":["Department of Economics, University of Crete, Gallos Campus, Rethymno, Crete, Greece"],"raw_orcid":"https://orcid.org/0000-0001-8727-5151","affiliations":[{"raw_affiliation_string":"Department of Economics, University of Crete, Gallos Campus, Rethymno, Crete, Greece","institution_ids":["https://openalex.org/I142617266"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051832576","display_name":"Kriton Kalantidis","orcid":"https://orcid.org/0000-0002-6698-8563","observed_orcids":["https://orcid.org/0000-0002-6698-8563"]},"institutions":[{"id":"https://openalex.org/I142617266","display_name":"University of Crete","ror":"https://ror.org/00dr28g20","country_code":"GR","type":"education","lineage":["https://openalex.org/I142617266"]},{"id":"https://openalex.org/I8901234","display_name":"Foundation for Research and Technology Hellas","ror":"https://ror.org/052rphn09","country_code":"GR","type":"facility","lineage":["https://openalex.org/I8901234"]}],"countries":["GR"],"is_corresponding":false,"raw_author_name":"Kriton Kalantidis","raw_affiliation_strings":["Department of Biology, University of Crete, Vassilika Vouton, Heraklion, Crete, Greece","Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece"],"raw_orcid":"https://orcid.org/0000-0002-6698-8563","affiliations":[{"raw_affiliation_string":"Department of Biology, University of Crete, Vassilika Vouton, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I142617266"]},{"raw_affiliation_string":"Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology \u2013Hellas, Heraklion, Crete, Greece","institution_ids":["https://openalex.org/I8901234"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5040596947"],"corresponding_institution_ids":["https://openalex.org/I142617266","https://openalex.org/I8901234"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13220","display_name":"Plant and Fungal Interactions Research","score":0.0005000000237487257,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11750","display_name":"Phytoplasmas and Hemiptera pathogens","score":9.999999747378752e-05,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ceratonia-siliqua","display_name":"Ceratonia siliqua","score":1.0},{"id":"https://openalex.org/keywords/virome","display_name":"virome","score":0.9200000166893005},{"id":"https://openalex.org/keywords/plant-viruses","display_name":"plant viruses","score":0.9710000157356262},{"id":"https://openalex.org/keywords/secoviridae","display_name":"Secoviridae","score":0.8550000190734863},{"id":"https://openalex.org/keywords/strawberry-latent-ringspot-virus","display_name":"strawberry latent ringspot virus","score":0.9980000257492065},{"id":"https://openalex.org/keywords/phenuiviridae","display_name":"Phenuiviridae","score":0.9729999899864197},{"id":"https://openalex.org/keywords/novel-virus-discovery","display_name":"novel virus discovery","score":0.6610000133514404},{"id":"https://openalex.org/keywords/crete","display_name":"Crete","score":0.6700000166893005},{"id":"https://openalex.org/keywords/viral-surveillance","display_name":"viral surveillance","score":0.6420000195503235}],"concepts":[{"id":"https://openalex.org/C2910258055","wikidata":"https://www.wikidata.org/wiki/Q68763","display_name":"Ceratonia siliqua","level":2,"score":0.8051999807357788},{"id":"https://openalex.org/C190743605","wikidata":"https://www.wikidata.org/wiki/Q17027885","display_name":"Human virome","level":4,"score":0.7439000010490417},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7305999994277954},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6168000102043152},{"id":"https://openalex.org/C4646841","wikidata":"https://www.wikidata.org/wiki/Q13996","display_name":"Mediterranean climate","level":2,"score":0.5843999981880188},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.43939998745918274},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.38179999589920044},{"id":"https://openalex.org/C2781397471","wikidata":"https://www.wikidata.org/wiki/Q296910","display_name":"Olea","level":2,"score":0.3741999864578247},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3686000108718872},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.34310001134872437},{"id":"https://openalex.org/C2994092193","wikidata":"https://www.wikidata.org/wiki/Q16769446","display_name":"Coat protein","level":4,"score":0.3296999931335449},{"id":"https://openalex.org/C76818968","wikidata":"https://www.wikidata.org/wiki/Q181940","display_name":"Sanger sequencing","level":4,"score":0.29280000925064087},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.28999999165534973},{"id":"https://openalex.org/C109110057","wikidata":"https://www.wikidata.org/wiki/Q1495434","display_name":"Plant virus","level":3,"score":0.2851000130176544},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.26579999923706055},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.2644999921321869},{"id":"https://openalex.org/C2776625791","wikidata":"https://www.wikidata.org/wiki/Q3400142","display_name":"Potyvirus","level":4,"score":0.2644999921321869},{"id":"https://openalex.org/C157369684","wikidata":"https://www.wikidata.org/wiki/Q34740","display_name":"Genus","level":2,"score":0.2563999891281128},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.25369998812675476}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.15.751538","doi":"https://doi.org/10.64898/2026.09.15.751538","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751538","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751538.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.15.751538","doi":"https://doi.org/10.64898/2026.09.15.751538","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751538","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751538.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"score":0.6875,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7213469037.pdf","grobid_xml":"https://content.openalex.org/works/W7213469037.grobid-xml"},"referenced_works_count":5,"referenced_works":["https://openalex.org/W2766176746","https://openalex.org/W4232645477","https://openalex.org/W4311129186","https://openalex.org/W4386704002","https://openalex.org/W4407031330"],"related_works":["https://openalex.org/W7064213316","https://openalex.org/W3118610834","https://openalex.org/W4403685972","https://openalex.org/W6997321892","https://openalex.org/W4391773948","https://openalex.org/W4289780779","https://openalex.org/W2074767595","https://openalex.org/W2098508475","https://openalex.org/W135803737","https://openalex.org/W4319786686"],"abstract_inverted_index":{"ABSTRACT":[0],"Carob":[1,178],"(":[2],"Ceratonia":[3],"siliqua":[4],")":[5],"is":[6,66],"an":[7],"important":[8,297],"yet":[9],"often":[10],"underestimated":[11],"Mediterranean":[12,229,298],"tree":[13],"species.":[14],"Historically":[15],"used":[16],"as":[17,129,131,167],"a":[18,56,136,143,168,208,254,275],"sweetener":[19],"by":[20,154],"ancient":[21],"Greeks":[22],"and":[23,44,49,90,122,138,142,158,206,218,227,258,266,283,286],"Arabs,":[24],"it":[25],"also":[26],"supported":[27],"populations":[28],"during":[29],"periods":[30],"of":[31,81,112,147,164,192,201,215,222,240,269],"famine.":[32],"Beyond":[33],"its":[34],"cultural":[35],"value,":[36],"carob":[37,58,82,194,205,223,245,289],"exhibits":[38],"notable":[39],"agronomic":[40],"traits,":[41],"including":[42,253],"drought":[43],"temperature":[45],"tolerance,":[46],"soil-erosion":[47],"prevention,":[48],"potential":[50],"contributions":[51],"to":[52,294],"rural":[53],"development.":[54],"Although":[55],"Cretan":[57],"genome":[59],"assembly":[60],"has":[61],"recently":[62],"become":[63],"available,":[64],"little":[65],"known":[67],"about":[68],"pathogens":[69],"associated":[70,243],"with":[71,244],"this":[72,185,296],"species,":[73,171],"particularly":[74],"viruses.":[75],"Here,":[76],"we":[77,174],"characterized":[78,140],"the":[79,103,148,162,165,176,188,193,219,236,241,267],"virome":[80,242],"trees":[83],"in":[84,204,225],"Crete":[85,226],"using":[86],"high-throughput":[87],"sequencing":[88],"(HTS)":[89],"targeted":[91],"molecular":[92],"validation.":[93],"We":[94],"collected":[95],"134":[96],"leaf":[97],"samples":[98],"from":[99],"34":[100],"growers":[101],"across":[102],"island\u2019s":[104],"four":[105],"prefectures.":[106],"HTS":[107],"analysis":[108],"revealed":[109],"novel":[110,256],"isolates":[111],"two":[113],"Secoviridae":[114],"members":[115],"(Artichoke":[116],"yellow":[117],"ringspot":[118,125],"virus":[119,126],"-":[120,127],"AYRSV)":[121],"Strawberry":[123],"latent":[124],"SLRSV),":[128],"well":[130],"Soybean":[132],"ilarvirus":[133],"1":[134,180],"(SolV1),":[135],"putative":[137],"incompletely":[139],"jivivirus,":[141],"previously":[144,249],"undescribed":[145],"coguvirus":[146,166,179],"family":[149],"Phenuiviridae":[150],",":[151],"all":[152],"confirmed":[153],"PCR":[155],"screening.":[156],"Phylogenetic":[157],"sequence":[159],"analyses":[160],"support":[161],"classification":[163],"distinct":[169],"viral":[170,202,251],"for":[172,210,277],"which":[173],"propose":[175],"name":[177],"(CaCoV1).":[181],"To":[182],"our":[183],"knowledge,":[184],"study":[186,234],"provides":[187,235],"first":[189,237],"comprehensive":[190,238],"characterization":[191,239],"virome.":[195],"These":[196],"findings":[197],"expand":[198],"current":[199],"knowledge":[200],"diversity":[203],"establish":[207],"foundation":[209],"future":[211,278],"epidemiological":[212],"studies,":[213],"certification":[214],"propagation":[216,270,282],"material,":[217],"sustainable":[220],"expansion":[221],"cultivation":[224],"other":[228],"regions.":[230],"IMPACT":[231],"STATEMENT":[232],"This":[233],"trees.":[246],"It":[247],"reveals":[248],"unknown":[250],"diversity,":[252],"proposed":[255],"coguvirus,":[257],"identifies":[259],"viruses":[260],"that":[261],"may":[262],"affect":[263],"plant":[264],"health":[265],"production":[268],"material.":[271],"The":[272],"results":[273],"provide":[274],"basis":[276],"virus-surveillance":[279],"programs,":[280],"improved":[281],"grafting":[284],"practices,":[285],"more":[287],"resilient":[288],"cultivation,":[290],"supporting":[291],"ongoing":[292],"efforts":[293],"revitalize":[295],"crop.":[299]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-17T00:00:00"}
