{"id":"https://openalex.org/W7213449905","doi":"https://doi.org/10.64898/2026.09.15.751736","title":"Transcriptional Plasticity of Trichoderma atroviride in Response to Different Plant Pathogens","display_name":"Transcriptional Plasticity of Trichoderma atroviride in Response to Different Plant Pathogens","publication_year":2026,"publication_date":"2026-09-16","ids":{"openalex":"https://openalex.org/W7213449905","doi":"https://doi.org/10.64898/2026.09.15.751736"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.15.751736","doi":"https://doi.org/10.64898/2026.09.15.751736","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751736","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751736.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751736.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5134338650","display_name":"Etienne Br\u00e9mand","orcid":"https://orcid.org/0009-0008-3988-6220","observed_orcids":["https://orcid.org/0009-0008-3988-6220"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210125447","display_name":"Institut de Recherche en Horticulture et Semences","ror":"https://ror.org/02xq0x374","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Etienne Br\u00e9mand","raw_affiliation_strings":["Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France"],"raw_orcid":"https://orcid.org/0009-0008-3988-6220","affiliations":[{"raw_affiliation_string":"Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082783437","display_name":"Franck Bastide","orcid":"https://orcid.org/0000-0003-4900-6756","observed_orcids":["https://orcid.org/0000-0003-4900-6756"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210125447","display_name":"Institut de Recherche en Horticulture et Semences","ror":"https://ror.org/02xq0x374","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Franck Bastide","raw_affiliation_strings":["Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France"],"raw_orcid":"https://orcid.org/0000-0003-4900-6756","affiliations":[{"raw_affiliation_string":"Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081859408","display_name":"Justine Colou","orcid":"https://orcid.org/0000-0002-9623-4412","observed_orcids":["https://orcid.org/0000-0002-9623-4412"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210125447","display_name":"Institut de Recherche en Horticulture et Semences","ror":"https://ror.org/02xq0x374","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Justine Colou","raw_affiliation_strings":["Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France"],"raw_orcid":"https://orcid.org/0000-0002-9623-4412","affiliations":[{"raw_affiliation_string":"Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087477806","display_name":"Nicol\u00e1s Denanc\u00e9","orcid":"https://orcid.org/0000-0003-0173-3970","observed_orcids":["https://orcid.org/0000-0003-0173-3970"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicolas Denanc\u00e9","raw_affiliation_strings":["GEVES, SNES, Laboratoire de Pathologie, Angers, France"],"raw_orcid":"https://orcid.org/0000-0003-0173-3970","affiliations":[{"raw_affiliation_string":"GEVES, SNES, Laboratoire de Pathologie, Angers, France","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5049264043","display_name":"Thomas Guillemette","orcid":"https://orcid.org/0000-0002-5649-974X","observed_orcids":["https://orcid.org/0000-0002-5649-974X"]},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210125447","display_name":"Institut de Recherche en Horticulture et Semences","ror":"https://ror.org/02xq0x374","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2800285241","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]},{"id":"https://openalex.org/I4399657933","display_name":"L'Institut Agro","ror":"https://ror.org/01dkyve95","country_code":"FR","type":"education","lineage":["https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I49451733","display_name":"Universit\u00e9 d'Angers","ror":"https://ror.org/04yrqp957","country_code":"FR","type":"education","lineage":["https://openalex.org/I49451733"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Thomas Guillemette","raw_affiliation_strings":["Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France"],"raw_orcid":"https://orcid.org/0000-0002-5649-974X","affiliations":[{"raw_affiliation_string":"Univ Angers, INRAE, Institut Agro, UMR 1345 IRHS, SFR 4207 QUASAV, Angers, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5049264043"],"corresponding_institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210125447","https://openalex.org/I4399657933","https://openalex.org/I49451733"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.7910000085830688,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10076","display_name":"Plant-Microbe Interactions and Immunity","score":0.7910000085830688,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.09709999710321426,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.03530000150203705,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trichoderma-atroviride","display_name":"Trichoderma atroviride","score":1.0},{"id":"https://openalex.org/keywords/mycoparasitism","display_name":"mycoparasitism","score":0.9570000171661377},{"id":"https://openalex.org/keywords/transcriptional-plasticity","display_name":"transcriptional plasticity","score":0.8230000138282776},{"id":"https://openalex.org/keywords/plant-pathogen-antagonism","display_name":"plant pathogen antagonism","score":0.8130000233650208},{"id":"https://openalex.org/keywords/alternaria-brassicicola","display_name":"Alternaria brassicicola","score":0.9990000128746033},{"id":"https://openalex.org/keywords/rhizoctonia-solani","display_name":"Rhizoctonia solani","score":1.0},{"id":"https://openalex.org/keywords/pythium-ultimum","display_name":"Pythium ultimum","score":0.9909999966621399},{"id":"https://openalex.org/keywords/oomycete","display_name":"oomycete","score":0.6269999742507935},{"id":"https://openalex.org/keywords/specialized-metabolite-biosynthesis","display_name":"specialized metabolite biosynthesis","score":0.7059999704360962},{"id":"https://openalex.org/keywords/glycoside-hydrolases","display_name":"glycoside hydrolases","score":0.8830000162124634},{"id":"https://openalex.org/keywords/g-protein-coupled-receptors","display_name":"G protein-coupled receptors","score":0.8090000152587891},{"id":"https://openalex.org/keywords/nod-like-receptors","display_name":"NOD-like receptors","score":0.9990000128746033},{"id":"https://openalex.org/keywords/pathogen-perception","display_name":"pathogen perception","score":0.8579999804496765},{"id":"https://openalex.org/keywords/peroxisomal-function","display_name":"peroxisomal function","score":0.6899999976158142},{"id":"https://openalex.org/keywords/aromatic-amino-acid-biosynthesis","display_name":"aromatic amino acid biosynthesis","score":0.8320000171661377},{"id":"https://openalex.org/keywords/cell-wall-organization","display_name":"cell wall organization","score":0.6060000061988831}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8968999981880188},{"id":"https://openalex.org/C2776845247","wikidata":"https://www.wikidata.org/wiki/Q7263907","display_name":"Pythium ultimum","level":3,"score":0.7947999835014343},{"id":"https://openalex.org/C2777537739","wikidata":"https://www.wikidata.org/wiki/Q223597","display_name":"Oomycete","level":3,"score":0.710099995136261},{"id":"https://openalex.org/C89423630","wikidata":"https://www.wikidata.org/wiki/Q7193","display_name":"Microbiology","level":1,"score":0.6456000208854675},{"id":"https://openalex.org/C2779920767","wikidata":"https://www.wikidata.org/wiki/Q5234097","display_name":"Alternaria brassicicola","level":5,"score":0.5644999742507935},{"id":"https://openalex.org/C2780476228","wikidata":"https://www.wikidata.org/wiki/Q149125","display_name":"Rhizoctonia solani","level":2,"score":0.54830002784729},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5300999879837036},{"id":"https://openalex.org/C2776460866","wikidata":"https://www.wikidata.org/wiki/Q170065","display_name":"Pathogen","level":2,"score":0.5267999768257141},{"id":"https://openalex.org/C188082640","wikidata":"https://www.wikidata.org/wiki/Q1780899","display_name":"Complementation","level":4,"score":0.47699999809265137},{"id":"https://openalex.org/C2779012821","wikidata":"https://www.wikidata.org/wiki/Q1329233","display_name":"Elicitor","level":3,"score":0.454800009727478},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4131999909877777},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.3684999942779541},{"id":"https://openalex.org/C2780214302","wikidata":"https://www.wikidata.org/wiki/Q135322","display_name":"Trichoderma","level":2,"score":0.36239999532699585},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.3458000123500824},{"id":"https://openalex.org/C2775839086","wikidata":"https://www.wikidata.org/wiki/Q6471530","display_name":"Pathogenic fungus","level":3,"score":0.3240000009536743},{"id":"https://openalex.org/C2780778831","wikidata":"https://www.wikidata.org/wiki/Q424099","display_name":"Chitinase","level":3,"score":0.322299987077713},{"id":"https://openalex.org/C2779080361","wikidata":"https://www.wikidata.org/wiki/Q415311","display_name":"Jasmonic acid","level":3,"score":0.3165000081062317},{"id":"https://openalex.org/C2778342517","wikidata":"https://www.wikidata.org/wiki/Q5509914","display_name":"Fusarium solani","level":2,"score":0.30320000648498535},{"id":"https://openalex.org/C2778394675","wikidata":"https://www.wikidata.org/wiki/Q648056","display_name":"Fungi imperfecti","level":2,"score":0.295199990272522},{"id":"https://openalex.org/C2780530800","wikidata":"https://www.wikidata.org/wiki/Q7072921","display_name":"ORFS","level":5,"score":0.29499998688697815},{"id":"https://openalex.org/C2778635478","wikidata":"https://www.wikidata.org/wiki/Q516751","display_name":"Polyketide","level":4,"score":0.2946999967098236},{"id":"https://openalex.org/C2780100698","wikidata":"https://www.wikidata.org/wiki/Q311294","display_name":"Phytophthora","level":2,"score":0.27239999175071716},{"id":"https://openalex.org/C93678976","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant disease resistance","level":3,"score":0.26600000262260437},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.26570001244544983},{"id":"https://openalex.org/C183570298","wikidata":"https://www.wikidata.org/wiki/Q2004252","display_name":"Plant defense against herbivory","level":3,"score":0.26440000534057617},{"id":"https://openalex.org/C24527192","wikidata":"https://www.wikidata.org/wiki/Q17149729","display_name":"Human pathogen","level":3,"score":0.2572999894618988},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.2524000108242035}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.15.751736","doi":"https://doi.org/10.64898/2026.09.15.751736","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751736","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751736.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.15.751736","doi":"https://doi.org/10.64898/2026.09.15.751736","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.15.751736","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/16/2026.09.15.751736.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.40149998664855957}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310962","display_name":"Canadian Institute for Theoretical Astrophysics","ror":"https://ror.org/0265wc016"},{"id":"https://openalex.org/F4320324658","display_name":"Angers Loire M\u00e9tropole","ror":"https://ror.org/03g2f4v48"},{"id":"https://openalex.org/F4320325007","display_name":"Universite Angers","ror":"https://ror.org/04yrqp957"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7213449905.pdf","grobid_xml":"https://content.openalex.org/works/W7213449905.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W1500157653","https://openalex.org/W1546828876","https://openalex.org/W1972745233","https://openalex.org/W1979485792","https://openalex.org/W2035045872","https://openalex.org/W2052076436","https://openalex.org/W2106359267","https://openalex.org/W2106677414","https://openalex.org/W2112004950","https://openalex.org/W2129460334","https://openalex.org/W2129920598","https://openalex.org/W2148486105","https://openalex.org/W2549479091","https://openalex.org/W2592811885","https://openalex.org/W2765497440","https://openalex.org/W2797548348","https://openalex.org/W2804632190","https://openalex.org/W2912990441","https://openalex.org/W2976196334","https://openalex.org/W3007605416","https://openalex.org/W3016083555","https://openalex.org/W3019150760","https://openalex.org/W3095583226","https://openalex.org/W3158345945","https://openalex.org/W3203343200","https://openalex.org/W4205664187","https://openalex.org/W4285794672","https://openalex.org/W4300960992","https://openalex.org/W4320800236","https://openalex.org/W4323318353","https://openalex.org/W4368359355","https://openalex.org/W4389997036","https://openalex.org/W4392457344","https://openalex.org/W4394726113","https://openalex.org/W4396237279","https://openalex.org/W4396894751","https://openalex.org/W4400004442","https://openalex.org/W4401394057","https://openalex.org/W4404511387","https://openalex.org/W4406778273","https://openalex.org/W4409781688","https://openalex.org/W4412081416","https://openalex.org/W4415555753","https://openalex.org/W7128797509","https://openalex.org/W7166115436","https://openalex.org/W7166141147"],"related_works":["https://openalex.org/W2129920598","https://openalex.org/W7097710679","https://openalex.org/W2107104589","https://openalex.org/W2766114800","https://openalex.org/W7167622099","https://openalex.org/W2148486105","https://openalex.org/W2570033258","https://openalex.org/W4392457344","https://openalex.org/W3042874331","https://openalex.org/W6910010202"],"abstract_inverted_index":{"Abstract":[0],"Fungal":[1],"mycoparasitism":[2],"is":[3],"commonly":[4],"viewed":[5],"as":[6],"a":[7,26,148,215,286,314,329],"broadly":[8,180],"conserved":[9],"lifestyle":[10],"relying":[11],"on":[12,192,278,313],"the":[13,46,68,73,79,91,143,193,196,241,248,279],"secretion":[14],"of":[15,51,151,233,250,332],"cell":[16,237],"wall-degrading":[17],"enzymes":[18],"and":[19,48,78,96,160,224,253,299],"specialized":[20],"metabolites.":[21],"However,":[22],"whether":[23],"Trichoderma":[24,55],"deploys":[25],"universal":[27],"antagonistic":[28,54],"program":[29,317],"or":[30],"dynamically":[31,320],"adapts":[32],"its":[33,322],"molecular":[34],"arsenal":[35],"according":[36,324],"to":[37,221,243,296,325],"prey":[38,326],"identity":[39],"remains":[40],"largely":[41,187],"unknown.":[42],"Here,":[43],"we":[44],"investigated":[45],"phenotypic":[47],"transcriptomic":[49],"responses":[50,165],"four":[52,92,112],"highly":[53,117],"atroviride":[56,94,114,229,309],"strains":[57,95,99,101,115],"confronted":[58],"with":[59,129,142,171,186,195,202,236,270],"damping":[60],"off":[61],"pathogens":[62,146],"from":[63],"three":[64],"phylogenetically":[65],"distinct":[66,188,216,231,271],"lineages:":[67],"ascomycete":[69],"Alternaria":[70],"brassicicola":[71,223,298],",":[72,77,227],"basidiomycete":[74],"Rhizoctonia":[75],"solani":[76,226,245],"oomycete":[80],"Globisporangium":[81],"ultimum":[82,173,204,301],".":[83,174,205,302],"In":[84,219],"vitro":[85],"confrontation":[86,128,201],"assays":[87],"were":[88,166,179],"performed":[89],"between":[90],"T.":[93,113,228,308],"nine":[97],"pathogen":[98,109,134,212,263,280],"(three":[100],"per":[102,133],"species).":[103],"Despite":[104],"notable":[105],"intraspecific":[106],"variation":[107],"in":[108,169,262,294],"sensitivity,":[110],"all":[111,120,183],"remained":[116],"effective":[118],"against":[119],"tested":[121],"pathogens.":[122],"Comparative":[123],"RNA-seq":[124],"analyses":[125],"during":[126],"direct":[127],"one":[130],"representative":[131],"strain":[132],"species":[135],"revealed":[136],"strong":[137],"prey-dependent":[138],"transcriptional":[139,333],"plasticity.":[140],"Interactions":[141],"two":[144],"fungal":[145,211],"elicited":[147],"robust":[149],"induction":[150],"classical":[152],"mycoparasitic":[153,316],"machinery,":[154],"including":[155],"glycoside":[156],"hydrolases,":[157],"secreted":[158],"peptidases,":[159],"effector-like":[161],"proteins,":[162],"whereas":[163],"these":[164,304],"markedly":[167],"attenuated":[168],"interaction":[170],"G.":[172,203,300],"Specialized":[175],"metabolite":[176],"biosynthetic":[177],"genes":[178,234],"induced":[181,230],"across":[182],"interactions,":[184],"but":[185,318],"gene":[189],"sets":[190,232],"depending":[191,277],"pathogen,":[194],"strongest":[197],"divergence":[198],"observed":[199],"for":[200],"Beyond":[206],"this":[207],"shared":[208],"response,":[209],"each":[210],"also":[213,265],"triggered":[214],"host-specific":[217],"program.":[218],"response":[220,242,295],"A.":[222,297],"R.":[225,244],"associated":[235],"wall":[238],"organization,":[239],"while":[240],"specifically":[246],"involved":[247,261],"activation":[249],"peroxisomal":[251],"functions":[252],"aromatic":[254],"amino":[255],"acid":[256],"biosynthesis":[257],"pathways.":[258],"Receptors":[259],"potentially":[260],"perception":[264],"showed":[266],"pathogen-dependent":[267],"expression":[268],"patterns,":[269],"GPCRs":[272],"(G":[273],"protein-coupled":[274],"receptors)":[275,284],"overexpressed":[276],"encountered.":[281],"NLRs":[282],"(NOD-like":[283],"displayed":[285],"similar":[287],"pattern,":[288],"although":[289],"overexpression":[290],"was":[291],"detected":[292],"only":[293],"Together,":[303],"results":[305],"demonstrate":[306],"that":[307],"does":[310],"not":[311],"rely":[312],"fixed":[315],"instead":[319],"remodels":[321],"transcriptome":[323],"identity,":[327],"revealing":[328],"high":[330],"degree":[331],"plasticity":[334],"underlying":[335],"broad-spectrum":[336],"antagonism.":[337]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2026-09-17T00:00:00"}