{"id":"https://openalex.org/W7212375185","doi":"https://doi.org/10.1016/j.pld.2026.08.009","title":"Genome sequencing of rice landraces from the Yuanyang terraces uncovers ancient and diverse lineages of indica rice","display_name":"Genome sequencing of rice landraces from the Yuanyang terraces uncovers ancient and diverse lineages of indica rice","publication_year":2026,"publication_date":"2026-09-01","ids":{"openalex":"https://openalex.org/W7212375185","doi":"https://doi.org/10.1016/j.pld.2026.08.009"},"language":"en","primary_location":{"id":"doi:10.1016/j.pld.2026.08.009","doi":"https://doi.org/10.1016/j.pld.2026.08.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.pld.2026.08.009","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2468265926002222/pdf","source":{"id":"https://openalex.org/S123216674","display_name":"Acta Botanica Yunnanica","issn_l":"0253-2700","issn":["0253-2700","2095-0845","2096-2703","2468-2659"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","dongbi-b","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Diversity","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.sciencedirect.com/science/article/pii/S2468265926002222/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5001691821","display_name":"Huichuan Huang","orcid":"https://orcid.org/0000-0002-8400-7116","observed_orcids":["https://orcid.org/0000-0002-8400-7116"]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huichuan Huang","raw_affiliation_strings":["Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":"https://orcid.org/0000-0002-8400-7116","affiliations":[{"raw_affiliation_string":"Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071670784","display_name":"Shengchang Duan","orcid":"https://orcid.org/0000-0003-2728-8406","observed_orcids":["https://orcid.org/0000-0003-2728-8406"]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shengchang Duan","raw_affiliation_strings":["Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5151475223","display_name":"Xiang Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiang Li","raw_affiliation_strings":["Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035335701","display_name":"Linna Ma","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Linna Ma","raw_affiliation_strings":["Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056066703","display_name":"Xiahong He","orcid":"https://orcid.org/0000-0002-8702-2135","observed_orcids":["https://orcid.org/0000-0002-8702-2135"]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]},{"id":"https://openalex.org/I25399270","display_name":"Southwest Forestry University","ror":"https://ror.org/03dfa9f06","country_code":"CN","type":"education","lineage":["https://openalex.org/I25399270"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiahong He","raw_affiliation_strings":["Key Laboratory of Forest Resources Conservation and Utilization in the Southwest Mountains of China Ministry of Education, Southwest Forestry University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory of Forest Resources Conservation and Utilization in the Southwest Mountains of China Ministry of Education, Southwest Forestry University, Kunming, China","institution_ids":["https://openalex.org/I25399270"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5151455146","display_name":"Youyong Zhu","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Youyong Zhu","raw_affiliation_strings":["Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125603204","display_name":"Chengyun Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chengyun Li","raw_affiliation_strings":["Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Key Laboratory for Agro-Biodiversity and Pest Control of Ministry of Education, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136138907","display_name":"Yang Dong","orcid":"https://orcid.org/0000-0003-2117-538X","observed_orcids":["https://orcid.org/0000-0003-2117-538X"]},"institutions":[{"id":"https://openalex.org/I195019228","display_name":"Yunnan Agricultural University","ror":"https://ror.org/04dpa3g90","country_code":"CN","type":"education","lineage":["https://openalex.org/I195019228"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yang Dong","raw_affiliation_strings":["State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"State Key Laboratory for Conservation and Utilization of Bio-Resources in Yunnan, Yunnan Agricultural University, Kunming, China","institution_ids":["https://openalex.org/I195019228"]},{"raw_affiliation_string":"Yunnan Research Institute for Local Plateau Agriculture and Industry, Kunming, China","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020091529","display_name":"Jean\u2010Benoit Morel","orcid":"https://orcid.org/0000-0003-1988-956X","observed_orcids":["https://orcid.org/0000-0003-1988-956X"]},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4399598379","display_name":"Plant Health Institute de Montpellier","ror":"https://ror.org/05y5s3h28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4399598379","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jean-Benoit Morel","raw_affiliation_strings":["PHIM Plant Health Institute Montpellier, University of Montpellier, INRAE, CIRAD, IRD, Institut Agro, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0003-1988-956X","affiliations":[{"raw_affiliation_string":"PHIM Plant Health Institute Montpellier, University of Montpellier, INRAE, CIRAD, IRD, Institut Agro, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210166444","https://openalex.org/I4399598379"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002391381","display_name":"Pierre Gladieux","orcid":"https://orcid.org/0000-0003-1929-1576","observed_orcids":["https://orcid.org/0000-0003-1929-1576"]},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210166444","display_name":"Institut de Recherche pour le D\u00e9veloppement","ror":"https://ror.org/05q3vnk25","country_code":"FR","type":"government","lineage":["https://openalex.org/I2802818602","https://openalex.org/I4210090127","https://openalex.org/I4210131494","https://openalex.org/I4210166444"]},{"id":"https://openalex.org/I4399598379","display_name":"Plant Health Institute de Montpellier","ror":"https://ror.org/05y5s3h28","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210117091","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4399598379","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Pierre Gladieux","raw_affiliation_strings":["PHIM Plant Health Institute Montpellier, University of Montpellier, INRAE, CIRAD, IRD, Institut Agro, Montpellier, France"],"raw_orcid":"https://orcid.org/0000-0003-1929-1576","affiliations":[{"raw_affiliation_string":"PHIM Plant Health Institute Montpellier, University of Montpellier, INRAE, CIRAD, IRD, Institut Agro, Montpellier, France","institution_ids":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210166444","https://openalex.org/I4399598379"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5002391381","https://openalex.org/A5020091529","https://openalex.org/A5136138907"],"corresponding_institution_ids":["https://openalex.org/I131077856","https://openalex.org/I195019228","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210166444","https://openalex.org/I4399598379"],"apc_list":{"value":0,"currency":"USD","value_usd":0},"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.59112672,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.8579000234603882,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.8579000234603882,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.08219999819993973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12045","display_name":"Rice Cultivation and Yield Improvement","score":0.035100001841783524,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/indica-rice","display_name":"Indica rice","score":0.949999988079071},{"id":"https://openalex.org/keywords/rice-landrace","display_name":"rice landraces","score":0.9070000052452087},{"id":"https://openalex.org/keywords/population-structure","display_name":"population structure","score":0.8450000286102295},{"id":"https://openalex.org/keywords/population-bottleneck","display_name":"population bottleneck","score":0.7760000228881836},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.6759999990463257},{"id":"https://openalex.org/keywords/innate-immune-genes","display_name":"innate immunity genes","score":0.6610000133514404},{"id":"https://openalex.org/keywords/nlr-receptors","display_name":"NLR immune receptors","score":0.6579999923706055},{"id":"https://openalex.org/keywords/directional-selection","display_name":"directional selection","score":0.7649999856948853},{"id":"https://openalex.org/keywords/crop-domestication","display_name":"crop domestication","score":0.44200000166893005},{"id":"https://openalex.org/keywords/landrace-conservation","display_name":"landrace conservation","score":0.7369999885559082},{"id":"https://openalex.org/keywords/crop-disease-management","display_name":"crop disease management","score":0.3400000035762787}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7468000054359436},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5827999711036682},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5306000113487244},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4260999858379364},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.39309999346733093},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3630000054836273},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.34439998865127563},{"id":"https://openalex.org/C106337198","wikidata":"https://www.wikidata.org/wiki/Q13564012","display_name":"Illumina dye sequencing","level":4,"score":0.32429999113082886},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.31850001215934753},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3100000023841858},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.29089999198913574},{"id":"https://openalex.org/C125009961","wikidata":"https://www.wikidata.org/wiki/Q2342248","display_name":"Pyrosequencing","level":3,"score":0.27630001306533813},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.27309998869895935},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.26249998807907104},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.2567000091075897}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1016/j.pld.2026.08.009","doi":"https://doi.org/10.1016/j.pld.2026.08.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.pld.2026.08.009","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2468265926002222/pdf","source":{"id":"https://openalex.org/S123216674","display_name":"Acta Botanica Yunnanica","issn_l":"0253-2700","issn":["0253-2700","2095-0845","2096-2703","2468-2659"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","dongbi-b","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Diversity","raw_type":"journal-article"},{"id":"doi:10.1101/2025.09.09.675106","doi":"https://doi.org/10.1101/2025.09.09.675106","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.09.09.675106","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:HAL:hal-05764896v1","doi":null,"is_oa":true,"landing_page_url":"https://hal.science/hal-05764896","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plant Diversity, 2026, &#x27E8;10.1016/j.pld.2026.08.009&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:HAL:hal-05765516v1","doi":null,"is_oa":true,"landing_page_url":"https://hal.science/hal-05765516","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Plant Diversity, 2026, &#x27E8;10.1016/j.pld.2026.08.009&#x27E9;","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1016/j.pld.2026.08.009","doi":"https://doi.org/10.1016/j.pld.2026.08.009","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.pld.2026.08.009","pdf_url":"https://www.sciencedirect.com/science/article/pii/S2468265926002222/pdf","source":{"id":"https://openalex.org/S123216674","display_name":"Acta Botanica Yunnanica","issn_l":"0253-2700","issn":["0253-2700","2095-0845","2096-2703","2468-2659"],"is_oa":true,"is_in_doaj":true,"is_core":false,"listed_in":["doaj","dongbi-b","oarl","poland-20","russia-white-list-1"],"host_organization":"https://openalex.org/P4310319982","host_organization_name":"Science Press","host_organization_lineage":["https://openalex.org/P4310319982"],"host_organization_lineage_names":["Science Press"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Plant Diversity","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.9208999872207642,"id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G1913476003","display_name":null,"funder_award_id":"202402AE090026","funder_id":"https://openalex.org/F4320336602","funder_display_name":"Major Science and Technology Projects in Yunnan Province"},{"id":"https://openalex.org/G3974072143","display_name":"\u6c34\u7a3b\u5730\u65b9\u54c1\u79cd\u6708\u4eae\u8c37\u5355\u7c92\u4f20\u7eaf\u7cfb\u4e92\u4f5c\u8bf1\u5bfc\u6297\u7a3b\u761f\u75c5\u7684\u673a\u5236\u7814\u7a76","funder_award_id":"31960554","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4757935635","display_name":null,"funder_award_id":"2023YFE0107500","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G5074717997","display_name":null,"funder_award_id":"202402AE090026","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G901446109","display_name":null,"funder_award_id":"31801792","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323887","display_name":"Anhui Agricultural University","ror":"https://ror.org/0327f3359"},{"id":"https://openalex.org/F4320331560","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null},{"id":"https://openalex.org/F4320336602","display_name":"Major Science and Technology Projects in Yunnan Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7212375185.pdf","grobid_xml":"https://content.openalex.org/works/W7212375185.grobid-xml"},"referenced_works_count":56,"referenced_works":["https://openalex.org/W1580176313","https://openalex.org/W1965243405","https://openalex.org/W1976326910","https://openalex.org/W1984068087","https://openalex.org/W1988264555","https://openalex.org/W2006066143","https://openalex.org/W2008025742","https://openalex.org/W2012780568","https://openalex.org/W2028536733","https://openalex.org/W2041546943","https://openalex.org/W2060807665","https://openalex.org/W2064974222","https://openalex.org/W2068075772","https://openalex.org/W2085199608","https://openalex.org/W2093044565","https://openalex.org/W2101844654","https://openalex.org/W2114858518","https://openalex.org/W2119180969","https://openalex.org/W2119444539","https://openalex.org/W2125105412","https://openalex.org/W2140320046","https://openalex.org/W2141125259","https://openalex.org/W2147299002","https://openalex.org/W2149992227","https://openalex.org/W2152799443","https://openalex.org/W2156406442","https://openalex.org/W2161633633","https://openalex.org/W2166366643","https://openalex.org/W2256841911","https://openalex.org/W2564079037","https://openalex.org/W2579769336","https://openalex.org/W2605012004","https://openalex.org/W2611605679","https://openalex.org/W2791540588","https://openalex.org/W2800434159","https://openalex.org/W2912555347","https://openalex.org/W2950119373","https://openalex.org/W2951912016","https://openalex.org/W2972409916","https://openalex.org/W3002815299","https://openalex.org/W3004887261","https://openalex.org/W3025678672","https://openalex.org/W3042974185","https://openalex.org/W3133553757","https://openalex.org/W3162619936","https://openalex.org/W3173730296","https://openalex.org/W3197367468","https://openalex.org/W3199637732","https://openalex.org/W4205267473","https://openalex.org/W4287510032","https://openalex.org/W4327811383","https://openalex.org/W4385638754","https://openalex.org/W4390619566","https://openalex.org/W4401577457","https://openalex.org/W6893995818","https://openalex.org/W7212397014"],"related_works":["https://openalex.org/W7212397014","https://openalex.org/W2903155376","https://openalex.org/W2379264897","https://openalex.org/W3109047359","https://openalex.org/W2360679282","https://openalex.org/W2363361906","https://openalex.org/W4205267473","https://openalex.org/W2372956792","https://openalex.org/W1823664796","https://openalex.org/W4409336240"],"abstract_inverted_index":{"High-yielding":[0],"elite":[1],"rice":[2,66],"cultivars":[3],"exhibit":[4,139],"limited":[5],"genetic":[6,38,51,121,162,216],"variability,":[7],"raising":[8],"concerns":[9],"about":[10],"our":[11,31],"capacity":[12],"to":[13,33,213],"sustain":[14],"productivity":[15],"amid":[16],"changing":[17],"biotic":[18],"and":[19,40,49,147,178,206,218,225],"abiotic":[20],"threats.":[21],"Meeting":[22],"the":[23,46,71,103,108,197],"challenges":[24],"that":[25,70,135],"lie":[26],"ahead":[27],"largely":[28],"depends":[29],"on":[30,45],"ability":[32],"leverage":[34],"novel":[35],"sources":[36],"of":[37,53,65,105,131,175,199],"variation":[39],"re-engineer":[41],"agrosystems.":[42],"We":[43,68],"report":[44],"evolutionary":[47],"history":[48],"population":[50,219],"structure":[52,220],"353":[54],"accessions":[55],"representing":[56],"90":[57,109],"landraces":[58,74,91,168,201],"from":[59,78,119],"China\u2019s":[60],"centuries-old":[61],"Yuanyang":[62],"terraces":[63],"(YYT)":[64],"paddies.":[67],"found":[69],"indica":[72,80,166],"YYT":[73,90,167],"are":[75],"genetically":[76],"distinct":[77],"other":[79],"groups,":[81],"forming":[82],"a":[83,93,154,172],"unique":[84],"lineage":[85],"with":[86,102,150],"high":[87,124,161],"standing":[88],"variation.":[89],"experienced":[92],"demographic":[94],"bottleneck":[95],"500":[96],"\u2013":[97],"1,000":[98],"years":[99],"ago,":[100],"coinciding":[101],"emergence":[104],"YYT.":[106],"Among":[107],"sampled":[110],"seed":[111],"bags,":[112],"most":[113],"contained":[114],"mixed-ancestry":[115],"genotypes":[116,118],"or":[117],"different":[120],"clusters,":[122],"suggesting":[123],"genotype":[125],"heterogeneity":[126],"in":[127,142,157,165],"paddy":[128],"fields.":[129],"Analysis":[130],"natural":[132],"selection":[133,152],"reveals":[134],"innate":[136],"immunity":[137,181],"genes":[138],"marked":[140],"differences":[141],"coevolutionary":[143],"dynamics":[144],"between":[145],"modern":[146,158],"traditional":[148],"rice,":[149],"directional":[151],"exerting":[153],"stronger":[155],"influence":[156],"varieties.":[159],"The":[160],"diversity":[163,217],"observed":[164],"is":[169],"characterized":[170],"by":[171,188],"substantial":[173],"proportion":[174],"exclusive":[176],"polymorphisms":[177],"haplotypes":[179],"at":[180,191],"genes,":[182],"alongside":[183],"older,":[184],"shared":[185],"alleles":[186],"maintained":[187],"rare-allele":[189],"advantage":[190],"NLR":[192],"receptors.":[193],"Our":[194],"study":[195],"highlights":[196],"necessity":[198],"preserving":[200],"within":[202],"their":[203,215],"native":[204],"agrosystems,":[205],"opens":[207],"new":[208],"avenues":[209],"for":[210,221],"targeted":[211],"efforts":[212],"harness":[214],"future":[222],"crop":[223],"improvement":[224],"sustainable":[226],"disease":[227],"management.":[228]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-13T00:00:00"}
