{"id":"https://openalex.org/W7212255442","doi":"https://doi.org/10.64898/2026.09.05.749566","title":"Using stochastic dynamic programming for making decisions about invasive species","display_name":"Using stochastic dynamic programming for making decisions about invasive species","publication_year":2026,"publication_date":"2026-09-11","ids":{"openalex":"https://openalex.org/W7212255442","doi":"https://doi.org/10.64898/2026.09.05.749566"},"language":"en","primary_location":{"id":"doi:10.64898/2026.09.05.749566","doi":"https://doi.org/10.64898/2026.09.05.749566","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.05.749566","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/11/2026.09.05.749566.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"volume":null,"type":"preprint","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/11/2026.09.05.749566.full.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5087619044","display_name":"Olivier Gim\u00e9nez","orcid":"https://orcid.org/0000-0001-7001-5142","observed_orcids":["https://orcid.org/0000-0001-7001-5142"]},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Olivier Gimenez","raw_affiliation_strings":["CNRS;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CNRS;","institution_ids":["https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041516254","display_name":"Abby Keller","orcid":"https://orcid.org/0009-0008-7914-6729","observed_orcids":["https://orcid.org/0009-0008-7914-6729"]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Abby Keller","raw_affiliation_strings":["University of California, Berkeley;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California, Berkeley;","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103056054","display_name":"Lucile Marescot","orcid":"https://orcid.org/0000-0003-2205-9970","observed_orcids":["https://orcid.org/0000-0003-2205-9970","https://orcid.org/0000-0001-7625-5446"]},"institutions":[{"id":"https://openalex.org/I131077856","display_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","ror":"https://ror.org/05kpkpg04","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Lucile Marescot","raw_affiliation_strings":["CIRAD;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CIRAD;","institution_ids":["https://openalex.org/I131077856"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051243206","display_name":"Carl Boettinger","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Carl Boettinger","raw_affiliation_strings":["University of California Berkeley;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of California Berkeley;","institution_ids":["https://openalex.org/I95457486"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035119000","display_name":"Cassie N. Speakman","orcid":"https://orcid.org/0000-0002-0023-518X","observed_orcids":["https://orcid.org/0000-0002-0023-518X"]},"institutions":[{"id":"https://openalex.org/I82951845","display_name":"RMIT University","ror":"https://ror.org/04ttjf776","country_code":"AU","type":"education","lineage":["https://openalex.org/I82951845"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Cassie Speakman","raw_affiliation_strings":["RMIT University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"RMIT University","institution_ids":["https://openalex.org/I82951845"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035119000","https://openalex.org/A5041516254","https://openalex.org/A5087619044","https://openalex.org/A5103056054"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I82951845","https://openalex.org/I95457486"],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11913","display_name":"Animal Ecology and Behavior Studies","score":0.28540000319480896,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11913","display_name":"Animal Ecology and Behavior Studies","score":0.28540000319480896,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10199","display_name":"Wildlife Ecology and Conservation","score":0.27079999446868896,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.13210000097751617,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/invasive-species-management","display_name":"invasive species management","score":0.9869999885559082},{"id":"https://openalex.org/keywords/stochastic-dynamic-programming","display_name":"stochastic dynamic programming","score":0.9800000190734863},{"id":"https://openalex.org/keywords/nutria","display_name":"Myocastor coypus","score":0.9980000257492065},{"id":"https://openalex.org/keywords/partially-observable-markov-decision-processes","display_name":"partially observable Markov decision processes","score":0.9350000023841858},{"id":"https://openalex.org/keywords/adaptive-management","display_name":"adaptive management","score":0.8569999933242798},{"id":"https://openalex.org/keywords/model-uncertainty","display_name":"model uncertainty","score":0.8939999938011169},{"id":"https://openalex.org/keywords/value-of-information","display_name":"value of information","score":0.8970000147819519},{"id":"https://openalex.org/keywords/imperfect-detection","display_name":"imperfect detection","score":0.7160000205039978},{"id":"https://openalex.org/keywords/spatial-dynamics","display_name":"spatial dynamics","score":0.7039999961853027},{"id":"https://openalex.org/keywords/decision-theory","display_name":"decision theory","score":0.4909999966621399},{"id":"https://openalex.org/keywords/wildlife-management","display_name":"wildlife management","score":0.7979999780654907}],"concepts":[{"id":"https://openalex.org/C2775917145","wikidata":"https://www.wikidata.org/wiki/Q4680750","display_name":"Adaptive management","level":2,"score":0.7006000280380249},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6672999858856201},{"id":"https://openalex.org/C106189395","wikidata":"https://www.wikidata.org/wiki/Q176789","display_name":"Markov decision process","level":3,"score":0.5866000056266785},{"id":"https://openalex.org/C37404715","wikidata":"https://www.wikidata.org/wiki/Q380679","display_name":"Dynamic programming","level":2,"score":0.5662000179290771},{"id":"https://openalex.org/C26713055","wikidata":"https://www.wikidata.org/wiki/Q245962","display_name":"Implementation","level":2,"score":0.475600004196167},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.44519999623298645},{"id":"https://openalex.org/C112930515","wikidata":"https://www.wikidata.org/wiki/Q4389547","display_name":"Risk analysis (engineering)","level":1,"score":0.4350000023841858},{"id":"https://openalex.org/C14224292","wikidata":"https://www.wikidata.org/wiki/Q13600188","display_name":"Conceptual framework","level":2,"score":0.41370001435279846},{"id":"https://openalex.org/C17098449","wikidata":"https://www.wikidata.org/wiki/Q176814","display_name":"Partially observable Markov decision process","level":4,"score":0.41370001435279846},{"id":"https://openalex.org/C137631369","wikidata":"https://www.wikidata.org/wiki/Q7617831","display_name":"Stochastic programming","level":2,"score":0.40070000290870667},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.3962000012397766},{"id":"https://openalex.org/C204323151","wikidata":"https://www.wikidata.org/wiki/Q905424","display_name":"Range (aeronautics)","level":2,"score":0.3840999901294708},{"id":"https://openalex.org/C2780310539","wikidata":"https://www.wikidata.org/wiki/Q12547192","display_name":"Imperfect","level":2,"score":0.3407000005245209},{"id":"https://openalex.org/C166548495","wikidata":"https://www.wikidata.org/wiki/Q580178","display_name":"Wildlife management","level":3,"score":0.33959999680519104},{"id":"https://openalex.org/C42475967","wikidata":"https://www.wikidata.org/wiki/Q194292","display_name":"Operations research","level":1,"score":0.3353999853134155},{"id":"https://openalex.org/C159886148","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov process","level":2,"score":0.3181999921798706},{"id":"https://openalex.org/C186116695","wikidata":"https://www.wikidata.org/wiki/Q5249226","display_name":"Decision analysis","level":2,"score":0.3133000135421753},{"id":"https://openalex.org/C28901747","wikidata":"https://www.wikidata.org/wiki/Q177571","display_name":"Decision theory","level":2,"score":0.3093000054359436},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.30469998717308044},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.28519999980926514},{"id":"https://openalex.org/C118251893","wikidata":"https://www.wikidata.org/wiki/Q1045631","display_name":"Management by objectives","level":2,"score":0.2849000096321106},{"id":"https://openalex.org/C193254401","wikidata":"https://www.wikidata.org/wiki/Q2160088","display_name":"Robust optimization","level":2,"score":0.2757999897003174},{"id":"https://openalex.org/C2778568292","wikidata":"https://www.wikidata.org/wiki/Q7727275","display_name":"The Conceptual Framework","level":3,"score":0.2619999945163727},{"id":"https://openalex.org/C107327155","wikidata":"https://www.wikidata.org/wiki/Q330268","display_name":"Decision support system","level":2,"score":0.2574000060558319},{"id":"https://openalex.org/C136020623","wikidata":"https://www.wikidata.org/wiki/Q183368","display_name":"Invasive species","level":2,"score":0.2558000087738037},{"id":"https://openalex.org/C28761237","wikidata":"https://www.wikidata.org/wiki/Q7805321","display_name":"Time horizon","level":2,"score":0.25540000200271606},{"id":"https://openalex.org/C32896092","wikidata":"https://www.wikidata.org/wiki/Q189447","display_name":"Risk management","level":2,"score":0.2517000138759613}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.64898/2026.09.05.749566","doi":"https://doi.org/10.64898/2026.09.05.749566","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.05.749566","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/11/2026.09.05.749566.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.64898/2026.09.05.749566","doi":"https://doi.org/10.64898/2026.09.05.749566","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.09.05.749566","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2026/09/11/2026.09.05.749566.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Life on land","score":0.7605999708175659,"id":"https://metadata.un.org/sdg/15"}],"study_designs":[],"awards":[{"id":"https://openalex.org/G152859138","display_name":null,"funder_award_id":"DESC0024386","funder_id":"https://openalex.org/F4320306084","funder_display_name":"U.S. Department of Energy"},{"id":"https://openalex.org/G2071775391","display_name":null,"funder_award_id":"DE-SC0024386","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G6049035971","display_name":"CAREER: Harnessing the data revolution for predicting and managing ecosystem regime shifts","funder_award_id":"1942280","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7890882285","display_name":null,"funder_award_id":"DE-SC0024386","funder_id":"https://openalex.org/F4320337506","funder_display_name":"Advanced Scientific Computing Research"},{"id":"https://openalex.org/G8401206523","display_name":"an iNterdisciplinary approach to smAll Carnivores - Humans relatiOnshipS","funder_award_id":"ANR-25-CE03-5469","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320324952","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337506","display_name":"Advanced Scientific Computing Research","ror":"https://ror.org/0012c7r22"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7212255442.pdf","grobid_xml":"https://content.openalex.org/works/W7212255442.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2091964226","https://openalex.org/W4400131695","https://openalex.org/W1998512218","https://openalex.org/W7096505320","https://openalex.org/W2600913458","https://openalex.org/W1991787727","https://openalex.org/W4285678328","https://openalex.org/W4385662775","https://openalex.org/W7126115074","https://openalex.org/W1566485607"],"abstract_inverted_index":{"1.":[0],"Invasive":[1],"species":[2,81,184],"pose":[3],"significant":[4],"ecological,":[5],"economic,":[6],"and":[7,21,29,62,76,123,151,158,176,189],"public":[8],"health":[9],"challenges.":[10],"Their":[11],"management":[12,31,87,119,191,215],"requires":[13,216],"repeated":[14],"decisions":[15],"under":[16,120,193],"uncertainty":[17],"about":[18],"when,":[19],"where":[20],"how":[22],"intensively":[23],"to":[24,60,64,73,106,168,173,203],"intervene.":[25],"Although":[26],"structured":[27],"decision-making":[28],"adaptive":[30,118],"provide":[32,69],"conceptual":[33],"frameworks":[34],"for":[35,79],"addressing":[36],"these":[37],"challenges,":[38],"their":[39],"practical":[40,71],"implementation":[41],"remains":[42],"limited":[43],"because":[44],"optimization":[45],"methods":[46,198],"such":[47],"as":[48,56,88],"stochastic":[49],"dynamic":[50],"programming":[51],"(SDP)":[52],"are":[53,137,201],"often":[54],"perceived":[55],"mathematically":[57],"complex,":[58],"challenting":[59],"apply":[61],"difficult":[63],"interpret.":[65],"2.":[66],"Here,":[67],"we":[68,93],"a":[70,89,98,204],"guide":[72,171],"using":[74,111],"SDP":[75],"its":[77],"extensions":[78],"invasive":[80,183,212],"management.":[82],"Using":[83],"coypu":[84],"(*Myocastor":[85],"coypus*)":[86],"running":[90],"case":[91],"study,":[92],"introduce":[94],"the":[95,128,156,165,197],"framework":[96],"through":[97],"minimal":[99],"working":[100],"example":[101],"before":[102,132],"progressively":[103],"extending":[104],"it":[105],"spatial":[107],"dynamics,":[108],"imperfect":[109],"detection":[110],"partially":[112],"observable":[113],"Markov":[114],"decision":[115,180,209],"processes":[116],"(POMDPs),":[117],"model":[121,148],"uncertainty,":[122],"value-of-information":[124],"analyses":[125],"that":[126],"quantify":[127],"benefits":[129],"of":[130,160,207],"learning":[131],"acting.":[133],"3.":[134],"All":[135],"examples":[136],"accompanied":[138],"by":[139],"reproducible":[140,188],"implementations":[141],"in":[142],"R,":[143],"together":[144],"with":[145],"recommendations":[146],"on":[147],"formulation,":[149],"parameterization":[150],"interpretation.":[152],"We":[153],"also":[154],"discuss":[155],"strengths":[157],"limitations":[159],"SDP.":[161],"4.":[162],"By":[163],"lowering":[164],"technical":[166],"barrier":[167],"SDP,":[169],"this":[170],"aims":[172],"help":[174],"ecologists":[175],"wildlife":[177],"managers":[178],"integrate":[179],"theory":[181],"into":[182],"management,":[185],"enabling":[186],"transparent,":[187],"objective-driven":[190],"strategies":[192],"uncertainty.":[194],"More":[195],"broadly,":[196],"presented":[199],"here":[200],"applicable":[202],"wide":[205],"range":[206],"ecological":[208],"problems":[210],"beyond":[211],"species,":[213],"wherever":[214],"balancing":[217],"immediate":[218],"actions":[219],"against":[220],"uncertain":[221],"future":[222],"outcomes.":[223]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-09-12T00:00:00"}
