{"id":"https://openalex.org/W7205691997","doi":null,"title":"Aspergillosis in a colony of Humboldt penguins ( Spheniscus humboldti ) under managed care: a clinical and envi- ronmental investigation in a French zoological park","display_name":"Aspergillosis in a colony of Humboldt penguins ( Spheniscus humboldti ) under managed care: a clinical and envi- ronmental investigation in a French zoological park","publication_year":2022,"publication_date":"2022-09-20","ids":{"openalex":"https://openalex.org/W7205691997"},"language":"en","primary_location":{"id":"pmh:oai:HAL:hal-05607785v1","doi":null,"is_oa":false,"landing_page_url":"https://hal.science/hal-05607785v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISHAM, Sep 2022, New Dehli/India, India. Medical Mycology, 60 (S1), pp.277","raw_type":"info:eu-repo/semantics/conferenceObject"},"volume":null,"type":"conference-paper","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5020040419","display_name":"Estelle Cateau","orcid":"https://orcid.org/0000-0003-4424-7606","observed_orcids":["https://orcid.org/0000-0003-4424-7606"]},"institutions":[{"id":"https://openalex.org/I4210111187","display_name":"Centre Hospitalier Universitaire de Poitiers","ror":"https://ror.org/029s6hd13","country_code":"FR","type":"healthcare","lineage":["https://openalex.org/I4210111187"]},{"id":"https://openalex.org/I4210153236","display_name":"\u00c9cologie et Biologie des Interactions","ror":"https://ror.org/051f3f740","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I32881790","https://openalex.org/I4210107625","https://openalex.org/I4210153236"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Cateau, Estelle","raw_affiliation_strings":["Laboratoire de Parasitologie et Mycologie M\u00e9dicales [CHU de Poitiers] (CHU de Poitiers \u2013 2 rue de la Mil\u00e9trie \u2013 CS 90577 \u2013 86000 Poitiers - France)","MHE - Microorganismes, H\u00f4tes, Environnements [\u00c9quipe du laboratoire EBI Poitiers] (B\u00e2timent B31 \u2013 3 rue Jacques Fort \u2013 TSA 51106 \u2013 86073 Poitiers Cedex 9 \u2013 France - France)","Service de mycologie et de parasitologie m\u00e9dicale [CHU de Poitiers] (CHU de Poitiers \u2013 2 rue de la Mil\u00e9trie \u2013 CS 90577 \u2013 86000 Poitiers - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Parasitologie et Mycologie M\u00e9dicales [CHU de Poitiers] (CHU de Poitiers \u2013 2 rue de la Mil\u00e9trie \u2013 CS 90577 \u2013 86000 Poitiers - France)","institution_ids":["https://openalex.org/I4210111187"]},{"raw_affiliation_string":"MHE - Microorganismes, H\u00f4tes, Environnements [\u00c9quipe du laboratoire EBI Poitiers] (B\u00e2timent B31 \u2013 3 rue Jacques Fort \u2013 TSA 51106 \u2013 86073 Poitiers Cedex 9 \u2013 France - France)","institution_ids":["https://openalex.org/I4210153236"]},{"raw_affiliation_string":"Service de mycologie et de parasitologie m\u00e9dicale [CHU de Poitiers] (CHU de Poitiers \u2013 2 rue de la Mil\u00e9trie \u2013 CS 90577 \u2013 86000 Poitiers - France)","institution_ids":["https://openalex.org/I4210111187"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090845341","display_name":"Antoine Leclerc","orcid":"https://orcid.org/0000-0003-0075-6142","observed_orcids":["https://orcid.org/0000-0003-0075-6142"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Leclerc, Antoine","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072352592","display_name":"No\u00e9mie Cartier","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cartier, No\u00e9mie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5021126042","display_name":"Isabel Valsechi","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Valsechi, Isabel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115943832","display_name":"Bailly Eric","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Eric, Bailly","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081233327","display_name":"Ronan Le S\u00e9n\u00e9chal","orcid":"https://orcid.org/0009-0005-5674-4273","observed_orcids":["https://orcid.org/0009-0005-5674-4273"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Le S\u00e9n\u00e9chal, Ronan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033154359","display_name":"Margaux Becerra","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Becerra, Margaux","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068666566","display_name":"Brice Le Gallou","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Gallou, Brice Le","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062574785","display_name":"Rose\u2010Anne Lavergne","orcid":"https://orcid.org/0000-0001-9339-1562","observed_orcids":["https://orcid.org/0000-0001-9339-1562"]},"institutions":[{"id":"https://openalex.org/I4387930219","display_name":"Cibles et M\u00e9dicaments des Infections et de l'Immunit\u00e9","ror":"https://ror.org/01cqd9q31","country_code":"FR","type":"facility","lineage":["https://openalex.org/I3019204325","https://openalex.org/I4387930219","https://openalex.org/I97188460"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Lavergne, Rose-Anne","raw_affiliation_strings":["IICiMed - Cibles et M\u00e9dicaments des Infections et de l'Immunit\u00e9 - UR 1155 (UFR sciences pharmaceutiques - 9 rue Bias- 44000 Nantes - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IICiMed - Cibles et M\u00e9dicaments des Infections et de l'Immunit\u00e9 - UR 1155 (UFR sciences pharmaceutiques - 9 rue Bias- 44000 Nantes - France)","institution_ids":["https://openalex.org/I4387930219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036769962","display_name":"Ad\u00e9la\u00efde Chesnay","orcid":"https://orcid.org/0000-0001-6218-2442","observed_orcids":["https://orcid.org/0000-0001-6218-2442"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chesnay, Ad\u00e9la\u00efde","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090272970","display_name":"Jean\u2010Patrice Robin","orcid":"https://orcid.org/0000-0002-9500-2724","observed_orcids":["https://orcid.org/0000-0002-9500-2724"]},"institutions":[{"id":"https://openalex.org/I2899451211","display_name":"Institut Pluridisciplinaire Hubert Curien","ror":"https://ror.org/01g3mb532","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I2899451211","https://openalex.org/I4210133362","https://openalex.org/I68947357"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Robin, Jean-Patrice","raw_affiliation_strings":["IPHC - Institut Pluridisciplinaire Hubert Curien (23 rue Loess - BP 28 67037 Strasbourg Cedex - France)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IPHC - Institut Pluridisciplinaire Hubert Curien (23 rue Loess - BP 28 67037 Strasbourg Cedex - France)","institution_ids":["https://openalex.org/I2899451211"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002374938","display_name":"Carolyn Cray","orcid":"https://orcid.org/0000-0002-7180-153X","observed_orcids":["https://orcid.org/0000-0002-7180-153X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cray, Carolyn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112864262","display_name":"Nicolas Goddard","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Goddard, Nicolas","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035971891","display_name":"Milan Thorel","orcid":"https://orcid.org/0000-0003-1324-0153","observed_orcids":["https://orcid.org/0000-0003-1324-0153"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Thorel, Milan","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148978528","display_name":"Jacques Guillot","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Guillot, Jacques","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125489425","display_name":"Baptiste Mulot","orcid":"https://orcid.org/0000-0001-8793-5850","observed_orcids":["https://orcid.org/0000-0001-8793-5850"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mulot, Baptiste","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5022459124","display_name":"Guillaume D\u00e9soubeaux","orcid":"https://orcid.org/0000-0001-7945-9890","observed_orcids":["https://orcid.org/0000-0001-7945-9890"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Desoubeaux, Guillaume","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.84861111,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"60","issue":"S1","first_page":"277","last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.38499999046325684,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10150","display_name":"Antifungal resistance and susceptibility","score":0.38499999046325684,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10838","display_name":"Animal Behavior and Welfare Studies","score":0.18379999697208405,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11037","display_name":"Fungal Infections and Studies","score":0.15760000050067902,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/aspergillosis","display_name":"aspergillosis","score":0.9959999918937683},{"id":"https://openalex.org/keywords/humboldt-penguin","display_name":"Humboldt penguin","score":0.9850000143051147},{"id":"https://openalex.org/keywords/zoo-animal-health","display_name":"zoo animal health","score":0.6230000257492065},{"id":"https://openalex.org/keywords/environmental-risk-factors","display_name":"environmental risk factors","score":0.5630000233650208},{"id":"https://openalex.org/keywords/fungal-infection","display_name":"fungal infection","score":0.5329999923706055},{"id":"https://openalex.org/keywords/managed-care","display_name":"managed care","score":0.5630000233650208}],"concepts":[{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.6541000008583069},{"id":"https://openalex.org/C2776391196","wikidata":"https://www.wikidata.org/wiki/Q259626","display_name":"Aspergillosis","level":2,"score":0.43220001459121704},{"id":"https://openalex.org/C45355965","wikidata":"https://www.wikidata.org/wiki/Q1643441","display_name":"Socioeconomics","level":1,"score":0.4129999876022339},{"id":"https://openalex.org/C526734887","wikidata":"https://www.wikidata.org/wiki/Q832237","display_name":"Environmental protection","level":1,"score":0.29159998893737793},{"id":"https://openalex.org/C2549261","wikidata":"https://www.wikidata.org/wiki/Q43455","display_name":"Ethnology","level":1,"score":0.2847000062465668},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.28439998626708984},{"id":"https://openalex.org/C97137747","wikidata":"https://www.wikidata.org/wiki/Q38112","display_name":"Forestry","level":1,"score":0.27379998564720154},{"id":"https://openalex.org/C61511704","wikidata":"https://www.wikidata.org/wiki/Q1671857","display_name":"Incidence (geometry)","level":2,"score":0.2572999894618988},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2475000023841858},{"id":"https://openalex.org/C112698675","wikidata":"https://www.wikidata.org/wiki/Q37038","display_name":"Advertising","level":1,"score":0.2386000007390976}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:HAL:hal-05607785v1","doi":null,"is_oa":false,"landing_page_url":"https://hal.science/hal-05607785v1","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4405252976","host_organization_name":"Centre pour la Communication Scientifique Directe","host_organization_lineage":["https://openalex.org/I4405252976"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"ISHAM, Sep 2022, New Dehli/India, India. Medical Mycology, 60 (S1), pp.277","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.6240000128746033,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4296478650","https://openalex.org/W4387537452","https://openalex.org/W4296515424","https://openalex.org/W4324355997","https://openalex.org/W2339764618","https://openalex.org/W7123484976","https://openalex.org/W6960384699","https://openalex.org/W7223233427","https://openalex.org/W2799468417","https://openalex.org/W4285269073"],"abstract_inverted_index":{"Objectives:":[0],"Aspergillosis":[1],"is":[2,18,104],"an":[3],"opportunistic":[4],"fungal":[5,126,205],"infection":[6],"due":[7],"to":[8,42,54,226,235,362],"Aspergillus":[9,228],"spp.,":[10],"and":[11,30,50,102,123,151,158,219,251,280,332,340],"primarily":[12],"A.":[13,168,193,248,305],"fumigatus":[14,169,194,306],".":[15,242,291],"The":[16,28,57,125,292],"disease":[17],"pervasive":[19],"in":[20,73,107,128,140,181,203,259,284,344],"avian":[21,34],"populations,":[22],"especially":[23],"those":[24],"under":[25,76],"managed":[26,75],"care.":[27,78],"incidence":[29,70,272,341],"the":[31,63,68,85,108,112,129,167,173,182,204,215,227,260,317,334,352,356,364],"management":[32],"of":[33,45,65,71,95,111,137,177,223,273,294,301,324,342,355,366],"aspergillosis":[35,72,178,274,343],"can":[36],"be":[37],"critically":[38],"impacted":[39],"by":[40,51,117,148],"exposure":[41],"high":[43,299],"levels":[44],"spores":[46],"via":[47],"environmental":[48,66,338],"contamination":[49,127,339],"strains":[52],"resistant":[53,367],"azole":[55],"drugs.":[56],"present":[58],"study":[59],"aimed":[60],"at":[61,277],"assessing":[62],"impact":[64],"contaminationon":[67],"clinical":[69,174,330],"penguins":[74,286,345],"human":[77],"ZooParc":[79],"de":[80],"Beauval":[81],"was":[82,131,179,275,281,313,327],"chosen":[83],"for":[84,155,166,309],"investigations,":[86],"because":[87],"this":[88],"zoological":[89],"facility":[90],"hosts":[91],"a":[92,186,220,298],"large":[93,119,221],"colony":[94],"Humboldt":[96],"penguin":[97,183,357],"(":[98,160,210,231,238,247,257,287],"Spheniscus":[99],"humboldti":[100],")":[101,164,218,237,241,250,268,290],"it":[103],"geographically":[105],"located":[106],"rural":[109,353],"countryside":[110],"Loir-et-Cher":[113],"district,":[114],"France,":[115],"surrounded":[116],"numerous":[118],"crop":[120],"fields":[121],"Material":[122],"methods:":[124],"environment":[130],"assessed":[132],"through":[133],"three":[134],"serial":[135],"sessions":[136],"surface":[138],"sampling":[139,319],"bird":[141],"nests:":[142],"all":[143],"isolates":[144,195],"were":[145,269],"counted,":[146],"identified":[147],"DNA":[149],"sequencing,":[150],"then":[152],"systematically":[153],"screened":[154],"resistance":[156,255],"mutations":[157],"MICs":[159],"minimal":[161],"inhibitory":[162],"concentrations":[163],"elevation":[165],"strains.":[170,368],"In":[171],"addition,":[172],"inci-":[175],"dence":[176],"evaluated":[180],"population":[184],"over":[185],"3-year":[187],"period.":[188],"A":[189,321],"microsatellite-based":[190],"analysis":[191,293],"tracked":[192],"circulation.":[196],"Results:":[197],"Environmental":[198],"investigations":[199],"highlighteda":[200],"substantial":[201],"increase":[202],"load":[206],"duringthe":[207],"Autumn":[208,318],"season":[209],">":[211,265],"12-":[212],"fold":[213],"vs.":[214],"other":[216],"timepoints":[217],"overrepresentation":[222],"species":[224,246],"belonging":[225],"section":[229],"Fumigati":[230],"ranging":[232],"from":[233,329,333],"22.7":[234],"94.6%":[236],"Fig.":[239,288],"1":[240,289],"Only":[243],"one":[244,252,310],"cryptic":[245],"nishimurae":[249],"isolate":[253,325],"exhibiting":[254],"mutation":[256],"G138S":[258],"cyp51A":[261],"gene;":[262],"MIC":[263],"itraconazole":[264],"4":[266],"\u03bcg/ml":[267],"detected.The":[270],"overall":[271],"measured":[276],"\u223c3.4%":[278],"case-years":[279],"observed":[282],"mostly":[283],"juvenile":[285],"microsatellite":[295],"polymorphism":[296],"revealed":[297],"level":[300],"genetic":[302],"diversity":[303],"among":[304],"isolates,":[307],"except":[308],"strain":[311],"that":[312],"largely":[314],"over-represented":[315],"during":[316],"session.":[320],"limited":[322],"number":[323],"genotypes":[326],"collected":[328],"cases":[331],"environment.":[335],"Conclusions:":[336],"Fungal":[337],"appeared":[346],"variable":[347],"depending":[348],"on":[349],"seasons,":[350],"but":[351],"location":[354],"habitat":[358],"did":[359],"not":[360],"seem":[361],"influence":[363],"emergence":[365]},"counts_by_year":[],"updated_date":"2026-10-27T15:51:10.671819","created_date":"2026-09-02T00:00:00"}