{"id":"https://openalex.org/W7204993529","doi":"https://doi.org/10.1080/24701394.2026.2725715","title":"Complete mitogenome of Plagiognathops microlepis and its phylogenetic position within the subfamily Xenocyprinae (Cypriniformes: Cyprinidae)","display_name":"Complete mitogenome of Plagiognathops microlepis and its phylogenetic position within the subfamily Xenocyprinae (Cypriniformes: Cyprinidae)","publication_year":2026,"publication_date":"2026-09-02","ids":{"openalex":"https://openalex.org/W7204993529","doi":"https://doi.org/10.1080/24701394.2026.2725715","pmid":"https://pubmed.ncbi.nlm.nih.gov/42683648"},"language":"en","primary_location":{"id":"doi:10.1080/24701394.2026.2725715","doi":"https://doi.org/10.1080/24701394.2026.2725715","is_oa":false,"landing_page_url":"https://doi.org/10.1080/24701394.2026.2725715","pdf_url":null,"source":{"id":"https://openalex.org/S4210196298","display_name":"Mitochondrial DNA Part A","issn_l":"2470-1394","issn":["2470-1394","2470-1408"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","medline","norway-1","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part A","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5149062964","display_name":"Huiming Zhou","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I204823248","display_name":"Huazhong Agricultural University","ror":"https://ror.org/023b72294","country_code":"CN","type":"education","lineage":["https://openalex.org/I204823248"]},{"id":"https://openalex.org/I4210102728","display_name":"Jiangxi Fisheries Research Institute","ror":"https://ror.org/015ddje41","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102728"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huiming Zhou","raw_affiliation_strings":["College of Fisheries, Huazhong Agricultural University","Jiangxi Fisheries Research Institute"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Fisheries, Huazhong Agricultural University","institution_ids":["https://openalex.org/I204823248"]},{"raw_affiliation_string":"Jiangxi Fisheries Research Institute","institution_ids":["https://openalex.org/I4210102728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148979854","display_name":"Guoyong Xiong","orcid":"https://orcid.org/0009-0004-7944-361X","observed_orcids":["https://orcid.org/0009-0004-7944-361X"]},"institutions":[{"id":"https://openalex.org/I4210110650","display_name":"Nanchang Normal University","ror":"https://ror.org/01sbpdt14","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210110650"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guoyong Xiong","raw_affiliation_strings":["Nanchang Normal University"],"raw_orcid":"https://orcid.org/0009-0004-7944-361X","affiliations":[{"raw_affiliation_string":"Nanchang Normal University","institution_ids":["https://openalex.org/I4210110650"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123669538","display_name":"Jiaxin Yuan","orcid":"https://orcid.org/0009-0000-6255-391X","observed_orcids":["https://orcid.org/0009-0000-6255-391X"]},"institutions":[{"id":"https://openalex.org/I4210102728","display_name":"Jiangxi Fisheries Research Institute","ror":"https://ror.org/015ddje41","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102728"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiaxin Yuan","raw_affiliation_strings":["Jiangxi Fisheries Research Institute"],"raw_orcid":"https://orcid.org/0009-0000-6255-391X","affiliations":[{"raw_affiliation_string":"Jiangxi Fisheries Research Institute","institution_ids":["https://openalex.org/I4210102728"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5128195681","display_name":"Menglu Li","orcid":"https://orcid.org/0009-0002-8903-4401","observed_orcids":["https://orcid.org/0009-0002-8903-4401"]},"institutions":[{"id":"https://openalex.org/I4210102728","display_name":"Jiangxi Fisheries Research Institute","ror":"https://ror.org/015ddje41","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102728"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Menglu Li","raw_affiliation_strings":["Jiangxi Fisheries Research Institute"],"raw_orcid":"https://orcid.org/0009-0002-8903-4401","affiliations":[{"raw_affiliation_string":"Jiangxi Fisheries Research Institute","institution_ids":["https://openalex.org/I4210102728"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048376233","display_name":"Zhiying Tao","orcid":"https://orcid.org/0009-0008-6987-2241","observed_orcids":["https://orcid.org/0009-0008-6987-2241"]},"institutions":[{"id":"https://openalex.org/I4210102728","display_name":"Jiangxi Fisheries Research Institute","ror":"https://ror.org/015ddje41","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210102728"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhiying Tao","raw_affiliation_strings":["Jiangxi Fisheries Research Institute"],"raw_orcid":"https://orcid.org/0009-0008-6987-2241","affiliations":[{"raw_affiliation_string":"Jiangxi Fisheries Research Institute","institution_ids":["https://openalex.org/I4210102728"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5048376233"],"corresponding_institution_ids":["https://openalex.org/I4210102728"],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"36","issue":"7","first_page":"182","last_page":"195"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6840999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.6840999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12319","display_name":"Fish Biology and Ecology Studies","score":0.2912999987602234,"subfield":{"id":"https://openalex.org/subfields/1104","display_name":"Aquatic Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.006000000052154064,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mitochondrial-genome","display_name":"mitochondrial genome","score":0.6949999928474426},{"id":"https://openalex.org/keywords/cyprinidae","display_name":"Cyprinidae","score":0.9049999713897705},{"id":"https://openalex.org/keywords/phylogenetic-position","display_name":"phylogenetic position","score":0.9049999713897705},{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"codon usage bias","score":0.871999979019165},{"id":"https://openalex.org/keywords/trna-secondary-structure","display_name":"tRNA secondary structure","score":0.8899999856948853},{"id":"https://openalex.org/keywords/incomplete-stop-codons","display_name":"incomplete stop codons","score":0.7480000257492065},{"id":"https://openalex.org/keywords/species-delimitation","display_name":"species delimitation","score":0.6970000267028809},{"id":"https://openalex.org/keywords/freshwater-fish","display_name":"freshwater fish","score":0.6370000243186951}],"concepts":[{"id":"https://openalex.org/C50929876","wikidata":"https://www.wikidata.org/wiki/Q164280","display_name":"Subfamily","level":3,"score":0.7397000193595886},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6948999762535095},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6592000126838684},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.5281000137329102},{"id":"https://openalex.org/C198082294","wikidata":"https://www.wikidata.org/wiki/Q3399648","display_name":"Position (finance)","level":2,"score":0.5182999968528748},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.454800009727478},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43639999628067017},{"id":"https://openalex.org/C24586158","wikidata":"https://www.wikidata.org/wiki/Q27075","display_name":"Mitochondrial DNA","level":3,"score":0.4147000014781952},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.38960000872612},{"id":"https://openalex.org/C2992072516","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetic relationship","level":4,"score":0.2705000042915344}],"mesh":[{"descriptor_ui":"D000081183","descriptor_name":"Codon Usage","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001482","descriptor_name":"Base Composition","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003530","descriptor_name":"Cyprinidae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D003530","descriptor_name":"Cyprinidae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012335","descriptor_name":"RNA, Ribosomal","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012343","descriptor_name":"RNA, Transfer","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054629","descriptor_name":"Genome, Mitochondrial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1080/24701394.2026.2725715","doi":"https://doi.org/10.1080/24701394.2026.2725715","is_oa":false,"landing_page_url":"https://doi.org/10.1080/24701394.2026.2725715","pdf_url":null,"source":{"id":"https://openalex.org/S4210196298","display_name":"Mitochondrial DNA Part A","issn_l":"2470-1394","issn":["2470-1394","2470-1408"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-c","medline","norway-1","poland-20","russia-white-list-3"],"host_organization":"https://openalex.org/P4310320547","host_organization_name":"Taylor & Francis","host_organization_lineage":["https://openalex.org/P4310320547","https://openalex.org/P4310320449"],"host_organization_lineage_names":["Taylor & Francis","Informa"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA Part A","raw_type":"journal-article"},{"id":"pmid:42683648","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42683648","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320327780","display_name":"Key Research and Development Program of Jiangxi Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W1840915262","https://openalex.org/W1911953541","https://openalex.org/W1972443324","https://openalex.org/W1972739887","https://openalex.org/W1976143036","https://openalex.org/W1978101350","https://openalex.org/W1982151076","https://openalex.org/W1982597966","https://openalex.org/W1982855075","https://openalex.org/W1989083100","https://openalex.org/W1997369421","https://openalex.org/W2001302497","https://openalex.org/W2018590530","https://openalex.org/W2026197201","https://openalex.org/W2030966943","https://openalex.org/W2036540060","https://openalex.org/W2037425215","https://openalex.org/W2040441669","https://openalex.org/W2049125905","https://openalex.org/W2055043387","https://openalex.org/W2056768797","https://openalex.org/W2056969597","https://openalex.org/W2060915061","https://openalex.org/W2066829062","https://openalex.org/W2070751513","https://openalex.org/W2083672473","https://openalex.org/W2085435822","https://openalex.org/W2091458350","https://openalex.org/W2097706568","https://openalex.org/W2115888213","https://openalex.org/W2122941580","https://openalex.org/W2131271579","https://openalex.org/W2136856411","https://openalex.org/W2138102208","https://openalex.org/W2144457415","https://openalex.org/W2148698435","https://openalex.org/W2155197438","https://openalex.org/W2157470390","https://openalex.org/W2157848631","https://openalex.org/W2160378127","https://openalex.org/W2163135539","https://openalex.org/W2563535234","https://openalex.org/W2580900366","https://openalex.org/W2789843538","https://openalex.org/W2888221673","https://openalex.org/W2895466298","https://openalex.org/W2950354111","https://openalex.org/W2951464304","https://openalex.org/W2977282014","https://openalex.org/W2984498537","https://openalex.org/W2994540573","https://openalex.org/W3005235420","https://openalex.org/W3084201551","https://openalex.org/W3138344805","https://openalex.org/W3139412859","https://openalex.org/W3157678246","https://openalex.org/W3187699204","https://openalex.org/W3195010157","https://openalex.org/W3213410277","https://openalex.org/W4213329868","https://openalex.org/W4221060997","https://openalex.org/W4235051201","https://openalex.org/W4236036086","https://openalex.org/W4238906737","https://openalex.org/W4307372673","https://openalex.org/W4309506674","https://openalex.org/W4313680734","https://openalex.org/W4388153651","https://openalex.org/W4388906262","https://openalex.org/W4390007436","https://openalex.org/W4393344669","https://openalex.org/W4394666350","https://openalex.org/W4394785938","https://openalex.org/W4398182689","https://openalex.org/W4404391539","https://openalex.org/W4405670661","https://openalex.org/W4405988267","https://openalex.org/W4408709091","https://openalex.org/W4411420310","https://openalex.org/W4417303132"],"related_works":["https://openalex.org/W7119484400","https://openalex.org/W4281709899","https://openalex.org/W2091458350","https://openalex.org/W2002095222","https://openalex.org/W3195570165","https://openalex.org/W2209485449","https://openalex.org/W3174932797","https://openalex.org/W3204581077","https://openalex.org/W4379233292","https://openalex.org/W2950737353"],"abstract_inverted_index":{"The":[0,48],"complete":[1],"mitochondrial":[2],"genome":[3,49],"of":[4,54,60,66,179],"Plagiognathops":[5],"microlepis":[6,142,181],"was":[7],"sequenced":[8],"using":[9],"Illumina":[10],"NovaSeq":[11],"and":[12,24,42,62,72,88,117,134,182,190],"PacBio":[13],"Sequel":[14],"II":[15],"platforms.The":[16],"circular":[17],"mitogenome":[18],"is":[19],"16,632":[20],"bp":[21],"in":[22],"length":[23],"contains":[25],"37":[26],"genes:":[27],"13":[28],"protein-coding":[29],"genes":[30,41],"(PCGs),":[31],"22":[32,121],"transfer":[33],"RNA":[34,39],"(tRNA)":[35],"genes,":[36],"2":[37],"ribosomal":[38],"(rRNA)":[40],"a":[43,63,112],"non-coding":[44],"control":[45],"region":[46],"(D-loop).":[47],"exhibits":[50],"an":[51,57],"AT":[52,58],"content":[53],"56.7%,":[55],"with":[56,70,74,91,111],"skew":[59,65],"0.104":[61],"GC":[64],"\u22120.255.":[67],"COX1":[68],"initiates":[69],"GTG":[71],"CYTB":[73],"ATA,":[75],"whereas":[76],"the":[77,167,176],"remaining":[78],"11":[79],"PCGs":[80,84],"employ":[81],"ATG;":[82],"four":[83],"(COX2,":[85],"COX3,":[86],"ND3,":[87],"ND4)":[89],"terminate":[90],"incomplete":[92],"stop":[93],"codons":[94,107],"(T":[95],"or":[96],"TA).":[97],"Relative":[98],"synonymous":[99],"codon":[100],"usage":[101],"(RSCU)":[102],"analysis":[103],"revealed":[104],"27":[105],"preferred":[106],"(RSCU":[108],">":[109],"1),":[110],"strong":[113],"bias":[114],"toward":[115],"A-":[116],"T-ending":[118],"codons.":[119],"All":[120],"tRNAs":[122],"display":[123],"conventional":[124],"cloverleaf":[125],"secondary":[126],"structures.":[127],"Maximum":[128],"likelihood":[129],"(ML),":[130],"Bayesian":[131],"inference":[132],"(BI)":[133],"Neighbor":[135],"joining":[136],"(NJ)":[137],"analyses":[138],"consistently":[139],"recovered":[140],"P.":[141,180],"as":[143],"sister":[144],"species":[145,186],"to":[146],"Xenocypris":[147],"davidi":[148],"(NJ":[149],"bootstrap":[150],"=":[151,155,160],"1,":[152],"ML":[153],"UFBoot":[154],"67,":[156],"BI":[157],"posterior":[158],"probability":[159],"0.977),":[161],"confirming":[162],"its":[163],"phylogenetic":[164],"position":[165],"within":[166,193],"genus":[168],"Xenocypris.":[169],"These":[170],"findings":[171],"provide":[172],"molecular":[173],"evidence":[174],"for":[175,185],"taxonomic":[177],"placement":[178],"genomic":[183],"resources":[184],"delimitation,":[187],"conservation":[188],"genetics":[189],"evolutionary":[191],"studies":[192],"Xenocyprinae.":[194]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2026-09-02T00:00:00"}
