{"id":"https://openalex.org/W7204608221","doi":null,"title":"Genetic analysis and quantitative trait locus mapping of Bacterial Panicle Blight (BPB) disease resistance in rice (Oryza sativa L.)","display_name":"Genetic analysis and quantitative trait locus mapping of Bacterial Panicle Blight (BPB) disease resistance in rice (Oryza sativa L.)","publication_year":2022,"publication_date":"2022-07-01","ids":{"openalex":"https://openalex.org/W7204608221"},"language":"en","primary_location":{"id":"pmh:oai:psasir.upm.edu.my:128002","doi":null,"is_oa":false,"landing_page_url":"http://psasir.upm.edu.my/id/eprint/128002/1/FP%202022%2093%20-%20Full%20Text.pdf","pdf_url":"http://psasir.upm.edu.my/id/eprint/128002/1/FP%202022%2093%20-%20Full%20Text.pdf","source":{"id":"https://openalex.org/S4377196260","display_name":"Universiti Putra Malaysia Institutional Repository (Universiti Putra Malaysia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I130343225","host_organization_name":"Universiti Putra Malaysia","host_organization_lineage":["https://openalex.org/I130343225"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Thesis"},"volume":null,"type":"dissertation","is_traditional":true,"indexed_in":[],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037973543","display_name":"Yusuf Rini Bashir","orcid":"https://orcid.org/0000-0001-8825-9102","observed_orcids":["https://orcid.org/0000-0001-8825-9102"]},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Bashir, Yusuf  Rini","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5037973543"],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.5717999935150146,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12858","display_name":"Plant Disease Resistance and Genetics","score":0.5717999935150146,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11468","display_name":"Genetic Mapping and Diversity in Plants and Animals","score":0.3131999969482422,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11578","display_name":"Plant Pathogenic Bacteria Studies","score":0.09300000220537186,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bacterial-panicle-blight","display_name":"bacterial panicle blight","score":0.9409999847412109},{"id":"https://openalex.org/keywords/burkholderia-glumae","display_name":"Burkholderia glumae","score":0.9599999785423279},{"id":"https://openalex.org/keywords/rice","display_name":"rice","score":0.8479999899864197},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.9169999957084656},{"id":"https://openalex.org/keywords/quantitative-trait-loci","display_name":"quantitative trait loci","score":0.9210000038146973},{"id":"https://openalex.org/keywords/qtl-mapping","display_name":"QTL mapping","score":0.8180000185966492},{"id":"https://openalex.org/keywords/f2-population","display_name":"F2 population","score":0.8980000019073486},{"id":"https://openalex.org/keywords/genetic-diversity","display_name":"genetic diversity","score":0.8450000286102295},{"id":"https://openalex.org/keywords/rice-germplasm","display_name":"rice germplasm","score":0.6899999976158142},{"id":"https://openalex.org/keywords/pathogenicity-test","display_name":"pathogenicity test","score":0.7149999737739563},{"id":"https://openalex.org/keywords/virulence","display_name":"virulence","score":0.6510000228881836},{"id":"https://openalex.org/keywords/heritability","display_name":"heritability","score":0.5820000171661377},{"id":"https://openalex.org/keywords/genetic-advance","display_name":"genetic advance","score":0.7860000133514404},{"id":"https://openalex.org/keywords/yield-components","display_name":"yield components","score":0.7289999723434448},{"id":"https://openalex.org/keywords/candidate-genes","display_name":"candidate genes","score":0.4779999852180481},{"id":"https://openalex.org/keywords/disease-resistance-breeding","display_name":"disease resistance breeding","score":0.4650000035762787}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8519999980926514},{"id":"https://openalex.org/C75337361","wikidata":"https://www.wikidata.org/wiki/Q148600","display_name":"Panicle","level":2,"score":0.76910001039505},{"id":"https://openalex.org/C2777461220","wikidata":"https://www.wikidata.org/wiki/Q589029","display_name":"Germplasm","level":2,"score":0.7129999995231628},{"id":"https://openalex.org/C81941488","wikidata":"https://www.wikidata.org/wiki/Q853421","display_name":"Quantitative trait locus","level":3,"score":0.5835999846458435},{"id":"https://openalex.org/C2778543611","wikidata":"https://www.wikidata.org/wiki/Q161426","display_name":"Oryza sativa","level":3,"score":0.5699999928474426},{"id":"https://openalex.org/C161890455","wikidata":"https://www.wikidata.org/wiki/Q1503548","display_name":"Heritability","level":2,"score":0.5432000160217285},{"id":"https://openalex.org/C182076605","wikidata":"https://www.wikidata.org/wiki/Q4273292","display_name":"Blight","level":2,"score":0.4715999960899353},{"id":"https://openalex.org/C93678976","wikidata":"https://www.wikidata.org/wiki/Q4215946","display_name":"Plant disease resistance","level":3,"score":0.46959999203681946},{"id":"https://openalex.org/C137580998","wikidata":"https://www.wikidata.org/wiki/Q235352","display_name":"Crop","level":2,"score":0.45399999618530273},{"id":"https://openalex.org/C84597430","wikidata":"https://www.wikidata.org/wiki/Q106227","display_name":"Locus (genetics)","level":3,"score":0.4302000105381012},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.4068000018596649},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.40059998631477356},{"id":"https://openalex.org/C194898557","wikidata":"https://www.wikidata.org/wiki/Q1779497","display_name":"UPGMA","level":4,"score":0.38280001282691956},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.38179999589920044},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.37869998812675476},{"id":"https://openalex.org/C84799019","wikidata":"https://www.wikidata.org/wiki/Q426365","display_name":"Polygene","level":4,"score":0.3668000102043152},{"id":"https://openalex.org/C144027150","wikidata":"https://www.wikidata.org/wiki/Q48803","display_name":"Horticulture","level":1,"score":0.3312000036239624},{"id":"https://openalex.org/C42972112","wikidata":"https://www.wikidata.org/wiki/Q170201","display_name":"Veterinary medicine","level":1,"score":0.3197000026702881},{"id":"https://openalex.org/C172777353","wikidata":"https://www.wikidata.org/wiki/Q1374271","display_name":"Genetic variability","level":4,"score":0.2994000017642975},{"id":"https://openalex.org/C2776547343","wikidata":"https://www.wikidata.org/wiki/Q24284978","display_name":"Major gene","level":3,"score":0.28780001401901245},{"id":"https://openalex.org/C2779249804","wikidata":"https://www.wikidata.org/wiki/Q736427","display_name":"Staple food","level":3,"score":0.28029999136924744},{"id":"https://openalex.org/C197321923","wikidata":"https://www.wikidata.org/wiki/Q4886","display_name":"Cultivar","level":2,"score":0.273499995470047},{"id":"https://openalex.org/C126343540","wikidata":"https://www.wikidata.org/wiki/Q889514","display_name":"Crop yield","level":2,"score":0.2671000063419342},{"id":"https://openalex.org/C2993653377","wikidata":"https://www.wikidata.org/wiki/Q4273292","display_name":"Bacterial blight","level":3,"score":0.26570001244544983},{"id":"https://openalex.org/C2780855054","wikidata":"https://www.wikidata.org/wiki/Q135239","display_name":"Burkholderia","level":3,"score":0.26030001044273376},{"id":"https://openalex.org/C46757340","wikidata":"https://www.wikidata.org/wiki/Q43238","display_name":"Poaceae","level":2,"score":0.2596000134944916},{"id":"https://openalex.org/C2778410202","wikidata":"https://www.wikidata.org/wiki/Q3019529","display_name":"Xylella fastidiosa","level":3,"score":0.25690001249313354},{"id":"https://openalex.org/C57473165","wikidata":"https://www.wikidata.org/wiki/Q7315604","display_name":"Resistance (ecology)","level":2,"score":0.2535000145435333}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:psasir.upm.edu.my:128002","doi":null,"is_oa":false,"landing_page_url":"http://psasir.upm.edu.my/id/eprint/128002/1/FP%202022%2093%20-%20Full%20Text.pdf","pdf_url":"http://psasir.upm.edu.my/id/eprint/128002/1/FP%202022%2093%20-%20Full%20Text.pdf","source":{"id":"https://openalex.org/S4377196260","display_name":"Universiti Putra Malaysia Institutional Repository (Universiti Putra Malaysia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I130343225","host_organization_name":"Universiti Putra Malaysia","host_organization_lineage":["https://openalex.org/I130343225"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Thesis"}],"best_oa_location":null,"sustainable_development_goals":[{"score":1.0,"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7213383862","https://openalex.org/W1981585242","https://openalex.org/W4283033998","https://openalex.org/W4318215182","https://openalex.org/W4400407471","https://openalex.org/W4416770852","https://openalex.org/W2792030200","https://openalex.org/W2115303634","https://openalex.org/W6948352743","https://openalex.org/W4323355388"],"abstract_inverted_index":{"Rice":[0,28],"(Oryza":[1],"sativa":[2],"L.)":[3],"is":[4,30,75,81,116,167,667,861],"an":[5],"important":[6],"staple":[7],"food":[8],"for":[9,88,120,141,173,209,626,697,746,753,776,879],"more":[10,121],"than":[11],"half":[12],"of":[13,21,56,84,164,231,238,273,284,293,310,374,401,411,481,486,518,547,576,582,680,685,705,732,737,765,791,818,829],"the":[14,22,36,111,126,146,152,154,165,207,211,225,229,232,246,261,265,274,278,285,290,326,339,363,368,372,375,379,392,399,433,438,448,464,474,490,544,579,586,593,600,623,627,674,678,692,700,706,725,729,733,792,798,809,830,840,844,851,866],"world\u2019s":[15],"population,":[16],"providing":[17],"up":[18],"to":[19,32,46,91,110,118,135,143,288,370,388,398,415,428,450,512,540,621,636,656,724,743,807,863,896],"23%":[20],"total":[23,684,793],"calories":[24],"consumed":[25],"by":[26,72,124,815],"humans.":[27],"crop":[29],"prone":[31],"many":[33],"diseases.":[34],"Among":[35],"diseases,":[37],"Bacterial":[38,62],"Panicle":[39,63],"Blight":[40,64],"(BPB)":[41,65],"disease":[42,66,70,304,465,566,754],"has":[43],"been":[44],"reported":[45,345],"cause":[47],"enormous":[48],"yield":[49,186,425],"loss.":[50],"In":[51,728],"2018,":[52],"over":[53],"12,000":[54],"hectares":[55],"paddy":[57],"fields":[58],"were":[59,204,217,240,407,421,445,498,528,615,634,654,689,712,722,751,774],"infested":[60],"with":[61,228,256,343,447,477,504,543,564,578,758,784],"in":[67,242,251,277,367,409,432,437,489,585,886,902],"Malaysia.":[68,314],"BPB":[69,101,144,385,747,777,820,824,880,899],"caused":[71],"Burkholderia":[73,295,330,402],"glumae":[74,296,347],"a":[76,99,351,478,565,572,640,683,735,875],"devastating":[77],"bacterial":[78],"disease.":[79],"There":[80],"no":[82],"report":[83],"single":[85],"genes":[86],"identified":[87,98,775,810],"complete":[89],"resistance":[90,102,123,142,778,881,900],"BPB.":[92,294,416],"Although,":[93],"previous":[94],"studies":[95],"have":[96],"successfully":[97],"few":[100],"QTLs,":[103],"but":[104],"could":[105],"not":[106],"be":[107,894],"narrowed":[108],"down":[109],"candidate":[112],"genes.":[113],"Therefore,":[114],"it":[115,860],"imperative":[117],"search":[119,410],"QTLs":[122,140],"screening":[125],"available":[127],"rice":[128,171,300,360,381,395,405,419,469,651,832],"germplasm":[129],"worldwide.":[130],"This":[131],"study":[132,155,166,286,892],"was":[133,156,180,200,249,297,329,341,354,473,560,741,805,813,848],"undertaken":[134],"characterize":[136,289],"and":[137,176,185,190,198,254,318,426,457,483,515,521,550,571,596,602,610,617,632,646,663,695,756,782,789,822],"map":[138,744],"out":[139],"using":[145,362,699],"F2":[147,726,739,826,841],"mapping":[148,624],"population.":[149],"To":[150],"achieve":[151],"objective,":[153],"portioned":[157],"into":[158,219],"five":[159],"parts.":[160],"The":[161,214,235,281,332,441,718],"first":[162,266,439,601],"part":[163,283,731],"about":[168],"evaluating":[169],"52":[170],"accessions":[172,208,239,382,406,420,444,497,527,614],"genetic":[174,196,884],"diversity":[175],"phylogenetic":[177],"relationships.":[178],"Data":[179],"taken":[181],"on":[182,224,356,424,463,592,779,854,871],"vegetative,":[183],"yield,":[184],"components,":[187,194],"while":[188,245],"phenotypic":[189,794],"genotypic":[191],"coefficients,":[192],"variance":[193,276,795],"expected":[195],"advance,":[197],"heritability":[199],"calculated.":[201],"Significant":[202],"differences":[203],"observed":[205],"among":[206,839],"all":[210],"characters":[212],"studied.":[213],"evaluated":[215,752],"genotypes":[216],"grouped":[218,241],"13":[220,526],"major":[221],"clusters":[222,252],"based":[223,423],"assessed":[226],"traits":[227],"aid":[230],"UPGMA":[233],"dendrogram.":[234],"highest":[236],"numbers":[237],"cluster":[243,434,594],"IV,":[244],"least":[247],"number":[248],"found":[250,529,561],"II":[253],"IX,":[255],"one":[257,556],"accession":[258,470,557],"each.":[259],"From":[260,857],"principal":[262,268],"component":[263],"analysis,":[264],"four":[267],"components":[269],"explained":[270],"97.3":[271],"percent":[272],"overall":[275],"data":[279],"set.":[280],"second":[282],"seeks":[287],"causal":[291],"pathogen":[292],"isolated":[298,327,376],"from":[299,306,391,509,537,599,639,691,890],"panicles,":[301],"showing":[302],"typical":[303,384],"symptoms":[305,386,453],"Ladang":[307],"15,":[308],"Faculty":[309],"Agriculture":[311],"Universiti":[312],"Putra":[313],"Cultural,":[315],"morphological,":[316],"biochemical,":[317],"polymerase":[319],"chain":[320],"reaction":[321],"(PCR)":[322],"methods":[323],"revealed":[324,431,668],"that":[325,669,865],"strain":[328],"glumae.":[331],"amplified":[333],"isolate":[334],"showed":[335,383],"100%":[336],"identity":[337],"when":[338],"sequence":[340],"aligned":[342],"other":[344],"B.":[346],"strains.":[348],"Following":[349],"that,":[350],"pathogenicity":[352,597],"test":[353],"conducted":[355,436],"three":[357],"susceptible":[358,476,502,825],"commercial":[359],"varieties":[361],"syringe":[364],"inoculation":[365],"method":[366,803],"glasshouse":[369],"affirm":[371],"virulence":[373],"pathogen.":[377],"All":[378],"inoculated":[380,446],"similar":[387],"those":[389],"obtained":[390],"naturally":[393],"infected":[394],"panicles.":[396],"Prior":[397],"characterization":[400],"glumae,":[403],"selected":[404,422,442,616],"screened":[408,655],"novel":[412],"resistant":[413,562,821],"sources":[414],"Twenty":[417],"eight":[418],"days":[427,459],"maturity":[429],"as":[430,500,619],"analysis":[435,595,801],"study.":[440],"28":[443],"B.glumae":[449],"assess":[451],"external":[452],"at":[454,850],"7,":[455],"14,":[456],"21":[458],"after":[460,493,589],"inoculation.":[461,494,590],"Based":[462,591],"severity":[466],"index":[467],"(DSI),":[468],"MRC":[471,605,611,643,647,661,664],"12":[472,675],"most":[475],"DSI":[479,506,534,574],"mean":[480,505,533,573],"85.2%":[482],"AUDPC":[484,516,546,581],"value":[485,507,535,575],"114.8":[487],"unit2":[488,520,523,549,552,584],"third":[491,587,603],"week":[492,588],"About":[495],"14":[496],"classified":[499],"moderately":[501],"(MS)":[503],"ranging":[508],"37.04%":[510],"(MRC24)":[511],"53.09%":[513],"(MRC11)":[514],"range":[517],"90.77":[519],"114.81":[522,551],".":[524],"Also,":[525],"highly":[530],"susceptible.":[531],"Their":[532],"ranged":[536],"58.02%":[538],"(MRC22)":[539],"85.19%":[541],"(MRC12)":[542],"corresponding":[545,580],"103.70":[548],",":[553],"respectively.":[554,796],"Only":[555],"(MRC":[558],"23)":[559],"(R)":[563],"incidence":[567],"score":[568],"between":[569,642,660],"0-3":[570],"14.81%":[577],"38.89":[583],"assay":[598],"studies,":[604],"10":[606,644,662,819,823,873],"(high":[607],"yielding":[608],"susceptible)":[609],"23":[612,648],"(resistant)":[613],"used":[618,635,742,806],"parents":[620],"develop":[622,637],"population":[625,736],"QTL":[628,745,852,878],"analysis.":[629],"Hand":[630],"emasculation":[631],"pollination":[633],"F1":[638,681,687,693,709,716,721],"cross":[641],"(female/recipient)":[645],"(male/donor).":[649],"201":[650,831],"SSR":[652,760,833],"markers":[653,659,834],"select":[657],"polymorphic":[658,701],"23.":[665],"It":[666],"39.98%":[670],"polymorphism":[671],"spread":[672],"across":[673,882],"chromosomes.":[676],"For":[677],"confirmation":[679],"hybridity,":[682],"66":[686,707],"plants":[688],"grown":[690,708],"seeds":[694],"tested":[696],"heterozygosity":[698],"background":[702],"makers.":[703],"Out":[704,828],"plants,":[710],"44":[711],"confirmed":[713,720],"heterozygous":[714],"true":[715,719],"plants.":[717],"advanced":[723],"generation.":[727],"fifth":[730],"study,":[734,859],"62":[738],"progenies":[740,842],"resistance.":[748],"Progeny":[749],"families":[750],"reactions":[755],"genotyped":[757],"46":[759],"markers.":[761],"Two":[762],"significant":[763],"(logarithm":[764],"odds":[766],"ratio":[767],">":[768],"2.5)":[769],"quantitative":[770],"trait":[771],"loci":[772],"(QTLs)":[773],"chromosomes":[780],"9":[781],"10,":[783],"individual":[785],"effects":[786],"explaining":[787],"7.9":[788],"40.3%":[790],"Furthermore,":[797],"bulk":[799],"segregant":[800],"(BSA)":[802],"BSA":[804,812],"confirm":[808],"QTLs.":[811],"done":[814],"bulking":[816],"DNA":[817],"progenies.":[827],"genotyped,":[835],"RM":[836],"228":[837],"co-segregate":[838],"constituting":[843],"respective":[845],"bulks.":[846],"RM228":[847,870],"mapped":[849],"region":[853,867],"chromosome":[855,872],"10.":[856],"this":[858,891],"interesting":[862],"show":[864],"RM590":[868],"\u2013":[869],"harbors":[874],"large":[876],"effect":[877],"several":[883],"backgrounds":[885],"rice.":[887,903],"Altogether,":[888],"findings":[889],"can":[893],"utilized":[895],"further":[897],"investigate":[898],"improvement":[901]},"counts_by_year":[],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2026-08-29T00:00:00"}
