{"id":"https://openalex.org/W7204575643","doi":"https://doi.org/10.7554/elife.112292.1.sa3","title":"Author response: Genomic variation and ancestry of Helicobacter pylori in the admixed population of Cabo Verde reveal host adaptation, limited host\u2013pathogen ancestry concordance, and signatures of trans-Atlantic slave trade migrations","display_name":"Author response: Genomic variation and ancestry of Helicobacter pylori in the admixed population of Cabo Verde reveal host adaptation, limited host\u2013pathogen ancestry concordance, and signatures of trans-Atlantic slave trade migrations","publication_year":2026,"publication_date":"2026-08-27","ids":{"openalex":"https://openalex.org/W7204575643","doi":"https://doi.org/10.7554/elife.112292.1.sa3"},"language":"en","primary_location":{"id":"doi:10.7554/elife.112292.1.sa3","doi":"https://doi.org/10.7554/elife.112292.1.sa3","is_oa":true,"landing_page_url":"https://doi.org/10.7554/elife.112292.1.sa3","pdf_url":null,"source":{"id":"https://openalex.org/S1336409049","display_name":"eLife","issn_l":"2050-084X","issn":["2050-084X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311710","host_organization_name":"eLife Sciences Publications Ltd","host_organization_lineage":["https://openalex.org/P4310311710"],"host_organization_lineage_names":["eLife Sciences Publications Ltd"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"peer-review"},"volume":null,"type":"peer-review","is_traditional":false,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.7554/elife.112292.1.sa3","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007184321","display_name":"Timothy N. A. Archampong","orcid":"https://orcid.org/0000-0002-9347-0516","observed_orcids":["https://orcid.org/0000-0002-9347-0516"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Timothy Archampong","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025066985","display_name":"Yi Ling Tam","orcid":"https://orcid.org/0009-0005-1436-2074","observed_orcids":["https://orcid.org/0009-0005-1436-2074"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yi Ling Tam","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039719564","display_name":"Charlotte Davison","orcid":"https://orcid.org/0000-0002-6359-2491","observed_orcids":["https://orcid.org/0000-0002-6359-2491"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Charlotte Davison","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138054314","display_name":"Isra Boughanmi","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Isra Boughanmi","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093320396","display_name":"Sam Tallman","orcid":"https://orcid.org/0000-0001-7183-6276","observed_orcids":["https://orcid.org/0000-0001-7183-6276"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sam Tallman","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138053067","display_name":"Milani Rodrigues","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Milani Rodrigues","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138071029","display_name":"Neia Tavares","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Neia Tavares","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138057648","display_name":"Kleyde Simone Santos","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kleyde Simone Santos","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138065885","display_name":"Francisco Barbosa Amado","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Francisco Barbosa Amado","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148568998","display_name":"Isabel Ramos","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Isabel Ramos","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138049088","display_name":"Antonieta Martins","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Antonieta Martins","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148568976","display_name":"Richard Haigh","orcid":"https://orcid.org/0000-0001-8597-9980","observed_orcids":["https://orcid.org/0000-0001-8597-9980"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Richard Haigh","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017138457","display_name":"Marco Rinaldo Oggioni","orcid":"https://orcid.org/0000-0003-4117-793X","observed_orcids":["https://orcid.org/0000-0003-4117-793X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marco R Oggioni","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138024287","display_name":"Rui Manuel Ferreira","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rui Manuel Ferreira","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5148538083","display_name":"C\u00e9u Figueiredo","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"C\u00e9u Figueiredo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088725378","display_name":"Fabian Freund","orcid":"https://orcid.org/0000-0002-9958-2703","observed_orcids":["https://orcid.org/0000-0002-9958-2703"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Fabian Freund","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009203494","display_name":"Isabel In\u00eas Ara\u00fajo","orcid":"https://orcid.org/0000-0001-7766-1059","observed_orcids":["https://orcid.org/0000-0001-7766-1059"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Isabel In\u00eas Ara\u00fajo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5023068873","display_name":"Sandra S. Beleza","orcid":"https://orcid.org/0000-0002-7004-3431","observed_orcids":["https://orcid.org/0000-0002-7004-3431"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sandra Beleza","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-7004-3431","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3000,"currency":"USD","value_usd":2500},"apc_paid":{"value":3000,"currency":"USD","value_usd":2500},"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10276","display_name":"Helicobacter pylori-related gastroenterology studies","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10276","display_name":"Helicobacter pylori-related gastroenterology studies","score":0.9692000150680542,"subfield":{"id":"https://openalex.org/subfields/2715","display_name":"Gastroenterology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.00989999994635582,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.00839999970048666,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/helicobacter-pylori","display_name":"Helicobacter pylori","score":1.0},{"id":"https://openalex.org/keywords/genomic-variation","display_name":"genomic variation","score":0.9369999766349792},{"id":"https://openalex.org/keywords/ancestry","display_name":"ancestry","score":0.5860000252723694},{"id":"https://openalex.org/keywords/cabo-verde","display_name":"Cape Verde","score":0.7440000176429749},{"id":"https://openalex.org/keywords/admixed-populations","display_name":"admixed populations","score":0.7839999794960022},{"id":"https://openalex.org/keywords/host-adaptation","display_name":"host adaptation","score":0.9900000095367432},{"id":"https://openalex.org/keywords/transatlantic-slave-trade","display_name":"transatlantic slave trade","score":0.9779999852180481},{"id":"https://openalex.org/keywords/migration","display_name":"migration","score":0.4880000054836273},{"id":"https://openalex.org/keywords/bacterial-genomics","display_name":"bacterial genomics","score":0.5}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.717199981212616},{"id":"https://openalex.org/C75069973","wikidata":"https://www.wikidata.org/wiki/Q913584","display_name":"Genetic genealogy","level":3,"score":0.6467000246047974},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.6036999821662903},{"id":"https://openalex.org/C2779377595","wikidata":"https://www.wikidata.org/wiki/Q21045424","display_name":"Approximate Bayesian computation","level":3,"score":0.5907999873161316},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5878000259399414},{"id":"https://openalex.org/C2776409635","wikidata":"https://www.wikidata.org/wiki/Q180556","display_name":"Helicobacter pylori","level":2,"score":0.548799991607666},{"id":"https://openalex.org/C2910841116","wikidata":"https://www.wikidata.org/wiki/Q1011","display_name":"Cape verde","level":2,"score":0.5353999733924866},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5163999795913696},{"id":"https://openalex.org/C105878827","wikidata":"https://www.wikidata.org/wiki/Q2041929","display_name":"Colonisation","level":3,"score":0.4235999882221222},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.39989998936653137},{"id":"https://openalex.org/C76509639","wikidata":"https://www.wikidata.org/wiki/Q918036","display_name":"Race (biology)","level":2,"score":0.351500004529953},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.3467999994754791},{"id":"https://openalex.org/C90856448","wikidata":"https://www.wikidata.org/wiki/Q431","display_name":"Zoology","level":1,"score":0.33570000529289246},{"id":"https://openalex.org/C60987743","wikidata":"https://www.wikidata.org/wiki/Q1460232","display_name":"Virulence","level":3,"score":0.328900009393692},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.3212999999523163},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.320499986410141},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3197000026702881},{"id":"https://openalex.org/C164866538","wikidata":"https://www.wikidata.org/wiki/Q367351","display_name":"Cluster (spacecraft)","level":2,"score":0.3131999969482422},{"id":"https://openalex.org/C761482","wikidata":"https://www.wikidata.org/wiki/Q118093","display_name":"Transmission (telecommunications)","level":2,"score":0.31220000982284546},{"id":"https://openalex.org/C207390915","wikidata":"https://www.wikidata.org/wiki/Q1230525","display_name":"Divergence (linguistics)","level":2,"score":0.30300000309944153},{"id":"https://openalex.org/C62130838","wikidata":"https://www.wikidata.org/wiki/Q5196163","display_name":"Pathogenicity island","level":4,"score":0.288100004196167},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.2870999872684479},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.2800000011920929},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.27480000257492065},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.27390000224113464},{"id":"https://openalex.org/C2776927270","wikidata":"https://www.wikidata.org/wiki/Q815962","display_name":"Colonization","level":2,"score":0.2687999904155731},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.26460000872612},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.2549999952316284}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.7554/elife.112292.1.sa3","doi":"https://doi.org/10.7554/elife.112292.1.sa3","is_oa":true,"landing_page_url":"https://doi.org/10.7554/elife.112292.1.sa3","pdf_url":null,"source":{"id":"https://openalex.org/S1336409049","display_name":"eLife","issn_l":"2050-084X","issn":["2050-084X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311710","host_organization_name":"eLife Sciences Publications Ltd","host_organization_lineage":["https://openalex.org/P4310311710"],"host_organization_lineage_names":["eLife Sciences Publications Ltd"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"peer-review"}],"best_oa_location":{"id":"doi:10.7554/elife.112292.1.sa3","doi":"https://doi.org/10.7554/elife.112292.1.sa3","is_oa":true,"landing_page_url":"https://doi.org/10.7554/elife.112292.1.sa3","pdf_url":null,"source":{"id":"https://openalex.org/S1336409049","display_name":"eLife","issn_l":"2050-084X","issn":["2050-084X"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311710","host_organization_name":"eLife Sciences Publications Ltd","host_organization_lineage":["https://openalex.org/P4310311710"],"host_organization_lineage_names":["eLife Sciences Publications Ltd"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"peer-review"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.46810001134872437,"display_name":"Good health and well-being"}],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7163748227","https://openalex.org/W6926642271","https://openalex.org/W6964321723","https://openalex.org/W1814602178","https://openalex.org/W3187959727","https://openalex.org/W3205441714","https://openalex.org/W2754496814","https://openalex.org/W1974207187","https://openalex.org/W3081913397","https://openalex.org/W4389282617"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2026-08-29T00:00:00"}