{"id":"https://openalex.org/W7204257576","doi":"https://doi.org/10.1016/j.funbio.2026.101847","title":"Comparative genomics of Cadophora luteo-olivacea reveals a divergent lineage, conserved functional repertoires, and strain-level phenotypic variation","display_name":"Comparative genomics of Cadophora luteo-olivacea reveals a divergent lineage, conserved functional repertoires, and strain-level phenotypic variation","publication_year":2026,"publication_date":"2026-08-26","ids":{"openalex":"https://openalex.org/W7204257576","doi":"https://doi.org/10.1016/j.funbio.2026.101847","pmid":"https://pubmed.ncbi.nlm.nih.gov/42875122"},"language":"en","primary_location":{"id":"doi:10.1016/j.funbio.2026.101847","doi":"https://doi.org/10.1016/j.funbio.2026.101847","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.funbio.2026.101847","pdf_url":null,"source":{"id":"https://openalex.org/S187344466","display_name":"Fungal Biology","issn_l":"1878-6146","issn":["1878-6146","1878-6162"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fungal Biology","raw_type":"journal-article"},"volume":null,"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.funbio.2026.101847","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5017082035","display_name":"Catarina Leal","orcid":"https://orcid.org/0009-0004-6222-6440","observed_orcids":["https://orcid.org/0009-0004-6222-6440"]},"institutions":[{"id":"https://openalex.org/I182534213","display_name":"Universidade do Porto","ror":"https://ror.org/043pwc612","country_code":"PT","type":"education","lineage":["https://openalex.org/I182534213"]},{"id":"https://openalex.org/I4210138594","display_name":"Rede de Qu\u00edmica e Tecnologia","ror":"https://ror.org/04j14t006","country_code":"PT","type":"nonprofit","lineage":["https://openalex.org/I4210138594"]}],"countries":["PT"],"is_corresponding":false,"raw_author_name":"C. Leal","raw_affiliation_strings":["Faculty of Sciences, LAQV-REQUIMTE, University of Porto, Porto, 4169-007, Portugal"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Sciences, LAQV-REQUIMTE, University of Porto, Porto, 4169-007, Portugal","institution_ids":["https://openalex.org/I182534213","https://openalex.org/I4210138594"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061503733","display_name":"Rebeca Bujanda","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I168974976","display_name":"Universidad de La Rioja","ror":"https://ror.org/0553yr311","country_code":"ES","type":"education","lineage":["https://openalex.org/I168974976"]},{"id":"https://openalex.org/I4210104992","display_name":"Instituto de Ciencias de la Vid y del Vino","ror":"https://ror.org/01rm2sw78","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I168974976","https://openalex.org/I4210104992","https://openalex.org/I4210162122"]},{"id":"https://openalex.org/I4210162122","display_name":"Gobierno de La Rioja","ror":"https://ror.org/05cjrnv40","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210162122"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"R. Bujanda","raw_affiliation_strings":["Instituto de Ciencias de La Vid y Del Vino (ICVV), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), Universidad de La Rioja, Gobierno de La Rioja, Ctra. LO-20 Salida 13, Finca La Grajera, Logro\u00f1o, 26071, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Ciencias de La Vid y Del Vino (ICVV), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), Universidad de La Rioja, Gobierno de La Rioja, Ctra. LO-20 Salida 13, Finca La Grajera, Logro\u00f1o, 26071, Spain","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I168974976","https://openalex.org/I4210104992","https://openalex.org/I4210162122"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001372006","display_name":"Ale\u0161 Eichmeier","orcid":"https://orcid.org/0000-0001-7358-3903","observed_orcids":["https://orcid.org/0000-0001-7358-3903"]},"institutions":[{"id":"https://openalex.org/I56081889","display_name":"Mendel University in Brno","ror":"https://ror.org/058aeep47","country_code":"CZ","type":"education","lineage":["https://openalex.org/I56081889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"A. Eichmeier","raw_affiliation_strings":["Mendel University in Brno, Faculty of Horticulture, Mendeleum - Institute of Genetics, Valticka 334, Lednice, 69144, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0001-7358-3903","affiliations":[{"raw_affiliation_string":"Mendel University in Brno, Faculty of Horticulture, Mendeleum - Institute of Genetics, Valticka 334, Lednice, 69144, Czech Republic","institution_ids":["https://openalex.org/I56081889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023065531","display_name":"Jakub Pe\u010denka","orcid":"https://orcid.org/0000-0001-6195-7592","observed_orcids":["https://orcid.org/0000-0001-6195-7592"]},"institutions":[{"id":"https://openalex.org/I56081889","display_name":"Mendel University in Brno","ror":"https://ror.org/058aeep47","country_code":"CZ","type":"education","lineage":["https://openalex.org/I56081889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"J. Pe\u010denka","raw_affiliation_strings":["Mendel University in Brno, Faculty of Horticulture, Mendeleum - Institute of Genetics, Valticka 334, Lednice, 69144, Czech Republic"],"raw_orcid":"https://orcid.org/0000-0001-6195-7592","affiliations":[{"raw_affiliation_string":"Mendel University in Brno, Faculty of Horticulture, Mendeleum - Institute of Genetics, Valticka 334, Lednice, 69144, Czech Republic","institution_ids":["https://openalex.org/I56081889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058329824","display_name":"Eli\u0161ka Hakalov\u00e1","orcid":"https://orcid.org/0000-0002-5433-8993","observed_orcids":["https://orcid.org/0000-0002-5433-8993"]},"institutions":[{"id":"https://openalex.org/I56081889","display_name":"Mendel University in Brno","ror":"https://ror.org/058aeep47","country_code":"CZ","type":"education","lineage":["https://openalex.org/I56081889"]}],"countries":["CZ"],"is_corresponding":false,"raw_author_name":"E. Hakalova","raw_affiliation_strings":["Mendel University in Brno, Faculty of Horticulture, Mendeleum - Institute of Genetics, Valticka 334, Lednice, 69144, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Mendel University in Brno, Faculty of Horticulture, Mendeleum - Institute of Genetics, Valticka 334, Lednice, 69144, Czech Republic","institution_ids":["https://openalex.org/I56081889"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061962068","display_name":"Livio Antonielli","orcid":"https://orcid.org/0000-0002-7140-8359","observed_orcids":["https://orcid.org/0000-0002-7140-8359"]},"institutions":[{"id":"https://openalex.org/I132118926","display_name":"AIT Austrian Institute of Technology GmbH","ror":"https://ror.org/04knbh022","country_code":"AT","type":"facility","lineage":["https://openalex.org/I132118926"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"L. Antonielli","raw_affiliation_strings":["AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Bioresources Unit, Tulln, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Bioresources Unit, Tulln, Austria","institution_ids":["https://openalex.org/I132118926"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041300910","display_name":"St\u00e9phane Compant","orcid":"https://orcid.org/0000-0003-0709-6087","observed_orcids":["https://orcid.org/0000-0003-0709-6087"]},"institutions":[{"id":"https://openalex.org/I132118926","display_name":"AIT Austrian Institute of Technology GmbH","ror":"https://ror.org/04knbh022","country_code":"AT","type":"facility","lineage":["https://openalex.org/I132118926"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"S. Compant","raw_affiliation_strings":["AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Bioresources Unit, Tulln, Austria"],"raw_orcid":"https://orcid.org/0000-0003-0709-6087","affiliations":[{"raw_affiliation_string":"AIT Austrian Institute of Technology GmbH, Center for Health & Bioresources, Bioresources Unit, Tulln, Austria","institution_ids":["https://openalex.org/I132118926"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035431600","display_name":"David Gramaje","orcid":"https://orcid.org/0000-0003-1755-3413","observed_orcids":["https://orcid.org/0000-0003-1755-3413"]},"institutions":[{"id":"https://openalex.org/I134820265","display_name":"Consejo Superior de Investigaciones Cient\u00edficas","ror":"https://ror.org/02gfc7t72","country_code":"ES","type":"government","lineage":["https://openalex.org/I134820265"]},{"id":"https://openalex.org/I168974976","display_name":"Universidad de La Rioja","ror":"https://ror.org/0553yr311","country_code":"ES","type":"education","lineage":["https://openalex.org/I168974976"]},{"id":"https://openalex.org/I4210104992","display_name":"Instituto de Ciencias de la Vid y del Vino","ror":"https://ror.org/01rm2sw78","country_code":"ES","type":"facility","lineage":["https://openalex.org/I134820265","https://openalex.org/I168974976","https://openalex.org/I4210104992","https://openalex.org/I4210162122"]},{"id":"https://openalex.org/I4210162122","display_name":"Gobierno de La Rioja","ror":"https://ror.org/05cjrnv40","country_code":"ES","type":"government","lineage":["https://openalex.org/I4210162122"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"D. Gramaje","raw_affiliation_strings":["Instituto de Ciencias de La Vid y Del Vino (ICVV), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), Universidad de La Rioja, Gobierno de La Rioja, Ctra. LO-20 Salida 13, Finca La Grajera, Logro\u00f1o, 26071, Spain. Electronic address: david.gramaje@csic.es"],"raw_orcid":"https://orcid.org/0000-0003-1755-3413","affiliations":[{"raw_affiliation_string":"Instituto de Ciencias de La Vid y Del Vino (ICVV), Consejo Superior de Investigaciones Cient\u00edficas (CSIC), Universidad de La Rioja, Gobierno de La Rioja, Ctra. LO-20 Salida 13, Finca La Grajera, Logro\u00f1o, 26071, Spain. Electronic address: david.gramaje@csic.es","institution_ids":["https://openalex.org/I134820265","https://openalex.org/I168974976","https://openalex.org/I4210104992","https://openalex.org/I4210162122"]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5035431600"],"corresponding_institution_ids":["https://openalex.org/I134820265","https://openalex.org/I168974976","https://openalex.org/I4210104992","https://openalex.org/I4210162122"],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":{"value":2500,"currency":"USD","value_usd":2500},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.6265535,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"130","issue":"7","first_page":"101847","last_page":"101847"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10825","display_name":"Plant Pathogens and Fungal Diseases","score":0.9750999808311462,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12668","display_name":"Yeasts and Rust Fungi Studies","score":0.006599999964237213,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cadophora-luteo-olivacea","display_name":"Cadophora luteo-olivacea","score":1.0},{"id":"https://openalex.org/keywords/grapevine-trunk-diseases","display_name":"grapevine trunk diseases","score":0.8259999752044678},{"id":"https://openalex.org/keywords/fungal-genomics","display_name":"fungal genomics","score":0.5260000228881836},{"id":"https://openalex.org/keywords/cadophora-malorum","display_name":"Cadophora malorum","score":0.9330000281333923},{"id":"https://openalex.org/keywords/phylogenomics","display_name":"phylogenomics","score":0.8100000023841858},{"id":"https://openalex.org/keywords/carbohydrate-active-enzymes","display_name":"carbohydrate-active enzymes","score":0.9120000004768372},{"id":"https://openalex.org/keywords/biosynthetic-gene-clusters","display_name":"biosynthetic gene clusters","score":0.9890000224113464},{"id":"https://openalex.org/keywords/transposable-elements","display_name":"transposable elements","score":0.9950000047683716},{"id":"https://openalex.org/keywords/pathogenicity","display_name":"pathogenicity","score":0.7540000081062317},{"id":"https://openalex.org/keywords/small-rna-profiling","display_name":"small RNA profiling","score":0.546999990940094},{"id":"https://openalex.org/keywords/mir398","display_name":"miR398","score":0.6819999814033508},{"id":"https://openalex.org/keywords/mir827","display_name":"miR827","score":0.9290000200271606},{"id":"https://openalex.org/keywords/mir156","display_name":"miR156","score":0.9990000128746033},{"id":"https://openalex.org/keywords/host-microbe-interactions","display_name":"host-microbe interactions","score":0.6919999718666077},{"id":"https://openalex.org/keywords/almond","display_name":"almond","score":0.4320000112056732},{"id":"https://openalex.org/keywords/apple","display_name":"apple","score":0.7870000004768372},{"id":"https://openalex.org/keywords/deep-sea-sediments","display_name":"deep-sea sediments","score":0.9169999957084656}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.970300018787384},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.699999988079071},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.671999990940094},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6700000166893005},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.633400022983551},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.527999997138977},{"id":"https://openalex.org/C161078062","wikidata":"https://www.wikidata.org/wiki/Q1068690","display_name":"Functional genomics","level":5,"score":0.4717000126838684},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.4684999883174896},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.37959998846054077},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.37549999356269836},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3474999964237213},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.31360000371932983},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.29980000853538513},{"id":"https://openalex.org/C130073038","wikidata":"https://www.wikidata.org/wiki/Q1211967","display_name":"Phenotypic trait","level":4,"score":0.2939000129699707},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.2897999882698059},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.28290000557899475},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.2808000147342682},{"id":"https://openalex.org/C126831891","wikidata":"https://www.wikidata.org/wiki/Q221673","display_name":"Host (biology)","level":2,"score":0.2597000002861023}],"mesh":[{"descriptor_ui":"D001203","descriptor_name":"Ascomycota","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":true},{"descriptor_ui":"D001203","descriptor_name":"Ascomycota","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001203","descriptor_name":"Ascomycota","qualifier_ui":"Q000302","qualifier_name":"isolation & purification","is_major_topic":true},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010935","descriptor_name":"Plant Diseases","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016681","descriptor_name":"Genome, Fungal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D027843","descriptor_name":"Vitis","qualifier_ui":"Q000382","qualifier_name":"microbiology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.funbio.2026.101847","doi":"https://doi.org/10.1016/j.funbio.2026.101847","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.funbio.2026.101847","pdf_url":null,"source":{"id":"https://openalex.org/S187344466","display_name":"Fungal Biology","issn_l":"1878-6146","issn":["1878-6146","1878-6162"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fungal Biology","raw_type":"journal-article"},{"id":"pmid:42875122","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42875122","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fungal biology","raw_type":"Journal Article"},{"id":"pmh:oai:digital.csic.es:10261/445594","doi":null,"is_oa":true,"landing_page_url":"https://api.elsevier.com/content/abstract/scopus_id/105048295990","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1016/j.funbio.2026.101847","doi":"https://doi.org/10.1016/j.funbio.2026.101847","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.funbio.2026.101847","pdf_url":null,"source":{"id":"https://openalex.org/S187344466","display_name":"Fungal Biology","issn_l":"1878-6146","issn":["1878-6146","1878-6162"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["cwts-core","dongbi-d","doyens","jufo-1","medline","norway-1","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Fungal Biology","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":64,"referenced_works":["https://openalex.org/W1484347389","https://openalex.org/W1642117298","https://openalex.org/W1767772592","https://openalex.org/W1969042907","https://openalex.org/W1996593487","https://openalex.org/W1996700726","https://openalex.org/W2005327866","https://openalex.org/W2007443639","https://openalex.org/W2009540277","https://openalex.org/W2019757158","https://openalex.org/W2025651867","https://openalex.org/W2045204781","https://openalex.org/W2056072739","https://openalex.org/W2088939249","https://openalex.org/W2091946062","https://openalex.org/W2093919850","https://openalex.org/W2101291993","https://openalex.org/W2105555748","https://openalex.org/W2106263380","https://openalex.org/W2106305702","https://openalex.org/W2107772251","https://openalex.org/W2108108770","https://openalex.org/W2111281047","https://openalex.org/W2120902911","https://openalex.org/W2121840477","https://openalex.org/W2122559203","https://openalex.org/W2140745167","https://openalex.org/W2144923485","https://openalex.org/W2149429041","https://openalex.org/W2152207030","https://openalex.org/W2155405959","https://openalex.org/W2155628349","https://openalex.org/W2170551349","https://openalex.org/W2575123779","https://openalex.org/W2741026700","https://openalex.org/W2758286886","https://openalex.org/W2789843538","https://openalex.org/W2803787045","https://openalex.org/W2804063886","https://openalex.org/W2807184840","https://openalex.org/W2900030356","https://openalex.org/W2900629010","https://openalex.org/W2905340019","https://openalex.org/W2920882904","https://openalex.org/W2942829220","https://openalex.org/W2950526549","https://openalex.org/W2951254987","https://openalex.org/W2951912016","https://openalex.org/W2994632914","https://openalex.org/W3136918052","https://openalex.org/W3139514292","https://openalex.org/W3157851104","https://openalex.org/W3168078588","https://openalex.org/W4205203149","https://openalex.org/W4206659849","https://openalex.org/W4225142428","https://openalex.org/W4285297392","https://openalex.org/W4303427232","https://openalex.org/W4388464539","https://openalex.org/W4391786768","https://openalex.org/W4411138220","https://openalex.org/W7089623098","https://openalex.org/W7124162249","https://openalex.org/W7135194741"],"related_works":["https://openalex.org/W7152738196","https://openalex.org/W2005327866","https://openalex.org/W3176907417","https://openalex.org/W7220859310","https://openalex.org/W7064589115","https://openalex.org/W2769479219","https://openalex.org/W4317358807","https://openalex.org/W2801098730","https://openalex.org/W6931427567","https://openalex.org/W4415285514"],"abstract_inverted_index":{"Cadophora":[0,110],"luteo-olivacea":[1,44,107],"has":[2],"been":[3],"reported":[4],"from":[5,47,68],"different":[6],"hosts":[7],"and":[8,10,29,56,66,83,146,220,229,238,241],"environments":[9],"is":[11],"associated":[12],"with":[13,109],"grapevine":[14,178,204],"trunk":[15],"diseases,":[16],"yet":[17],"the":[18,104,126],"extent":[19],"to":[20,70],"which":[21],"isolates":[22,45,174],"differ":[23],"in":[24,180,192,209],"genome":[25],"composition,":[26],"functional":[27,130,171,230],"potential,":[28],"pathogenicity":[30],"remains":[31],"poorly":[32],"understood.":[33],"Here,":[34],"we":[35],"performed":[36],"a":[37,79],"comparative":[38],"genomic":[39,228],"analysis":[40,91],"of":[41,162,202],"12":[42],"C.":[43,106],"recovered":[46],"grapevine,":[48],"almond,":[49],"apple,":[50],"Crocus":[51],"bulbs,":[52],"soil,":[53],"air,":[54],"wastewater,":[55],"deep-sea":[57],"sediment.":[58],"Genome":[59],"assemblies":[60],"were":[61],"highly":[62],"complete":[63],"(BUSCO":[64],">99%)":[65],"ranged":[67],"46.94":[69],"50.70":[71],"Mbp.":[72],"Pairwise":[73],"average":[74],"nucleotide":[75],"identity":[76],"(ANI)":[77],"revealed":[78,206],"cohesive":[80],"11-strain":[81],"group":[82],"one":[84],"markedly":[85],"divergent":[86],"strain,":[87],"CBS":[88,100],"266.93.":[89],"Phylogenomic":[90],"based":[92],"on":[93,177],"2645":[94],"single-copy":[95],"orthologs":[96],"further":[97,123],"showed":[98],"that":[99,118],"266.93":[101],"lies":[102],"outside":[103],"main":[105],"clade,":[108],"malorum":[111],"representing":[112],"its":[113,119],"closest":[114],"sampled":[115,234],"relative,":[116],"indicating":[117,189],"taxonomic":[120],"placement":[121],"warrants":[122],"investigation.":[124],"Across":[125],"remaining":[127],"strains,":[128,188],"broad":[129],"conservation":[131],"was":[132],"observed,":[133],"including":[134],"similar":[135],"KOG":[136],"profiles,":[137,213],"extensive":[138],"carbohydrate-active":[139],"enzyme":[140],"repertoires":[141],"(798-849":[142],"genes":[143],"per":[144,152],"genome),":[145,163],"abundant":[147],"biosynthetic":[148],"gene":[149],"clusters":[150],"(26-35":[151],"genome).":[153],"Transposable":[154],"element":[155],"content":[156],"varied":[157],"substantially":[158],"among":[159,187,232],"strains":[160],"(0.67-4.45%":[161],"but":[164],"this":[165],"variation":[166,191],"did":[167],"not":[168],"parallel":[169],"overall":[170],"profiles.":[172],"All":[173],"induced":[175],"lesions":[176],"leaves":[179,205],"vitro,":[181],"although":[182],"lesion":[183],"severity":[184],"differed":[185],"significantly":[186],"quantitative":[190],"lesion-forming":[193],"ability":[194],"under":[195],"controlled":[196],"conditions.":[197],"Exploratory":[198],"small":[199],"RNA":[200],"profiling":[201],"inoculated":[203],"isolate-associated":[207],"differences":[208],"host":[210],"miRNA":[211],"family":[212],"particularly":[214],"involving":[215],"miR":[216,218,221],"398,":[217],"827,":[219],"156.":[222],"Together,":[223],"these":[224],"results":[225],"show":[226],"substantial":[227],"similarity":[231],"most":[233],"isolates,":[235],"alongside":[236],"lineage-":[237],"strain-level":[239],"phenotypic":[240],"host-associated":[242],"variation.":[243]},"counts_by_year":[],"updated_date":"2026-10-26T11:51:55.731654","created_date":"2026-08-27T00:00:00"}