{"id":"https://openalex.org/W7203560126","doi":"https://doi.org/10.6084/m9.figshare.33261242","title":"Additional file 1 of plsMD: a plasmid reconstruction tool from short-read assemblies","display_name":"Additional file 1 of plsMD: a plasmid reconstruction tool from short-read assemblies","publication_year":2026,"publication_date":"2026-08-13","ids":{"openalex":"https://openalex.org/W7203560126","doi":"https://doi.org/10.6084/m9.figshare.33261242"},"language":"en","primary_location":{"id":"doi:10.6084/m9.figshare.33261242","doi":"https://doi.org/10.6084/m9.figshare.33261242","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.33261242","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.6084/m9.figshare.33261242","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5110608418","display_name":"Maryam Lotfi","orcid":"https://orcid.org/0009-0009-2108-5633","observed_orcids":["https://orcid.org/0009-0009-2108-5633"]},"institutions":[{"id":"https://openalex.org/I4210163780","display_name":"Children Cancer Hospital","ror":"https://ror.org/054dhw748","country_code":"EG","type":"healthcare","lineage":["https://openalex.org/I4210163780"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Maryam Lotfi","raw_affiliation_strings":["Children Cancer Hospital"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Children Cancer Hospital","institution_ids":["https://openalex.org/I4210163780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071109445","display_name":"Deena Jalal","orcid":"https://orcid.org/0000-0001-7778-5166","observed_orcids":["https://orcid.org/0000-0001-7778-5166"]},"institutions":[{"id":"https://openalex.org/I4210163780","display_name":"Children Cancer Hospital","ror":"https://ror.org/054dhw748","country_code":"EG","type":"healthcare","lineage":["https://openalex.org/I4210163780"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Deena Jalal","raw_affiliation_strings":["Children Cancer Hospital"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Children Cancer Hospital","institution_ids":["https://openalex.org/I4210163780"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5147233873","display_name":"Ahmed A. Sayed","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I107720978","display_name":"Ain Shams University","ror":"https://ror.org/00cb9w016","country_code":"EG","type":"education","lineage":["https://openalex.org/I107720978"]},{"id":"https://openalex.org/I4210163780","display_name":"Children Cancer Hospital","ror":"https://ror.org/054dhw748","country_code":"EG","type":"healthcare","lineage":["https://openalex.org/I4210163780"]}],"countries":["EG"],"is_corresponding":false,"raw_author_name":"Ahmed A. Sayed","raw_affiliation_strings":["Children Cancer Hospital","Ain Shams University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Children Cancer Hospital","institution_ids":["https://openalex.org/I4210163780"]},{"raw_affiliation_string":"Ain Shams University","institution_ids":["https://openalex.org/I107720978"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9765999913215637,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10120","display_name":"Bacterial Genetics and Biotechnology","score":0.009200000204145908,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11048","display_name":"Bacteriophages and microbial interactions","score":0.0019000000320374966,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/plasmid-reconstruction","display_name":"plasmid reconstruction","score":0.9909999966621399},{"id":"https://openalex.org/keywords/short-read-assembly","display_name":"short-read assembly","score":0.8180000185966492},{"id":"https://openalex.org/keywords/plasmid-detection","display_name":"plasmid detection","score":0.6520000100135803},{"id":"https://openalex.org/keywords/plasmid-genomics","display_name":"plasmid genomics","score":0.4449999928474426}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5702000260353088},{"id":"https://openalex.org/C22744801","wikidata":"https://www.wikidata.org/wiki/Q172778","display_name":"Plasmid","level":3,"score":0.414000004529953},{"id":"https://openalex.org/C199639397","wikidata":"https://www.wikidata.org/wiki/Q1788588","display_name":"Engineering drawing","level":1,"score":0.3668000102043152},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.289900004863739},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.24580000340938568},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.24390000104904175},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.23980000615119934},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.22010000050067902},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.21979999542236328},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.21289999783039093}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.6084/m9.figshare.33261242","doi":"https://doi.org/10.6084/m9.figshare.33261242","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.33261242","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.6084/m9.figshare.33261242.v1","doi":"https://doi.org/10.6084/m9.figshare.33261242.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.33261242.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.6084/m9.figshare.33261242","doi":"https://doi.org/10.6084/m9.figshare.33261242","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.33261242","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W4408607365","https://openalex.org/W2950530458","https://openalex.org/W4416137589","https://openalex.org/W6931325267","https://openalex.org/W3092504194","https://openalex.org/W2738855940","https://openalex.org/W7127580329","https://openalex.org/W7168030470","https://openalex.org/W2883838322","https://openalex.org/W4396572216"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-11-08T12:12:28.789561","created_date":"2026-08-16T00:00:00"}