{"id":"https://openalex.org/W7202389326","doi":"https://doi.org/10.1093/nar/gkag799","title":"Cross-species R-DeeP profiling reveals a conserved core of RNA-dependent proteins in yeast","display_name":"Cross-species R-DeeP profiling reveals a conserved core of RNA-dependent proteins in yeast","publication_year":2026,"publication_date":"2026-07-31","ids":{"openalex":"https://openalex.org/W7202389326","doi":"https://doi.org/10.1093/nar/gkag799","pmid":"https://pubmed.ncbi.nlm.nih.gov/42598851","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13469068"},"language":"en","primary_location":{"id":"doi:10.1093/nar/gkag799","doi":"https://doi.org/10.1093/nar/gkag799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkag799","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/nar/gkag799","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025922936","display_name":"Nadine Bianca W\u00e4ber","orcid":"https://orcid.org/0009-0005-0402-6480","observed_orcids":["https://orcid.org/0009-0005-0402-6480"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nadine Bianca W\u00e4ber","raw_affiliation_strings":["Institute of Veterinary Physiology and Biochemistry, Justus Liebig University, Giessen, Germany"],"raw_orcid":"https://orcid.org/0009-0005-0402-6480","affiliations":[{"raw_affiliation_string":"Institute of Veterinary Physiology and Biochemistry, Justus Liebig University, Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114239567","display_name":"Johanna Franziska Seidler","orcid":"https://orcid.org/0009-0004-3423-1322","observed_orcids":["https://orcid.org/0009-0004-3423-1322"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Johanna Franziska Seidler","raw_affiliation_strings":["Institute of Biochemistry, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0009-0004-3423-1322","affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115044615","display_name":"Fabienne Thelen","orcid":"https://orcid.org/0009-0008-9890-6228","observed_orcids":["https://orcid.org/0009-0008-9890-6228"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabienne Thelen","raw_affiliation_strings":["Institute of Bioinformatics and Systems Biology, Justus Liebig University GiessenGermany"],"raw_orcid":"https://orcid.org/0009-0008-9890-6228","affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, Justus Liebig University GiessenGermany","institution_ids":["https://openalex.org/I200763008","https://openalex.org/I4210100097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073367939","display_name":"Palina Kot","orcid":"https://orcid.org/0000-0003-4193-7185","observed_orcids":["https://orcid.org/0000-0003-4193-7185"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Palina Kot","raw_affiliation_strings":["Institute of Biochemistry, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-4193-7185","affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109761312","display_name":"Silke Schreiner","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Silke Schreiner","raw_affiliation_strings":["Institute of Biochemistry, Justus Liebig University Giessen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026776672","display_name":"Thomas Timm","orcid":"https://orcid.org/0000-0001-8569-7537","observed_orcids":["https://orcid.org/0000-0001-8569-7537"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Timm","raw_affiliation_strings":["Institute of Biochemistry of the Medical Faculty, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-8569-7537","affiliations":[{"raw_affiliation_string":"Institute of Biochemistry of the Medical Faculty, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010948340","display_name":"Vera Bettenworth","orcid":"https://orcid.org/0000-0003-2918-781X","observed_orcids":["https://orcid.org/0000-0003-2918-781X"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Vera Bettenworth","raw_affiliation_strings":["Institute of Biochemistry, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-2918-781X","affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028420889","display_name":"G\u00fcnter Lochnit","orcid":"https://orcid.org/0000-0003-0377-395X","observed_orcids":["https://orcid.org/0000-0003-0377-395X"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"G\u00fcnter Lochnit","raw_affiliation_strings":["Institute of Biochemistry of the Medical Faculty, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-0377-395X","affiliations":[{"raw_affiliation_string":"Institute of Biochemistry of the Medical Faculty, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026002214","display_name":"Katja Str\u00e4\u00dfer","orcid":"https://orcid.org/0000-0003-3533-5516","observed_orcids":["https://orcid.org/0000-0003-3533-5516"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]},{"id":"https://openalex.org/I4210154233","display_name":"Cardio-Pulmonary Institute","ror":"https://ror.org/04ckbty56","country_code":"DE","type":"facility","lineage":["https://openalex.org/I114090438","https://openalex.org/I149899117","https://openalex.org/I200763008","https://openalex.org/I4210102801","https://openalex.org/I4210154233"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katja Str\u00e4\u00dfer","raw_affiliation_strings":["Cardio-Pulmonary Institute (CPI), EXC 2026, 35392 Giessen, Germany","Institute of Biochemistry, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3533-5516","affiliations":[{"raw_affiliation_string":"Cardio-Pulmonary Institute (CPI), EXC 2026, 35392 Giessen, Germany","institution_ids":["https://openalex.org/I4210154233"]},{"raw_affiliation_string":"Institute of Biochemistry, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022413709","display_name":"Cornelia Kilchert","orcid":"https://orcid.org/0000-0001-6834-0704","observed_orcids":["https://orcid.org/0000-0001-6834-0704"]},"institutions":[{"id":"https://openalex.org/I200763008","display_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","ror":"https://ror.org/033eqas34","country_code":"DE","type":"education","lineage":["https://openalex.org/I200763008"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Cornelia Kilchert","raw_affiliation_strings":["Institute of Biochemistry, Justus Liebig University Giessen, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6834-0704","affiliations":[{"raw_affiliation_string":"Institute of Biochemistry, Justus Liebig University Giessen, Germany","institution_ids":["https://openalex.org/I200763008"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5022413709"],"corresponding_institution_ids":["https://openalex.org/I200763008"],"apc_list":{"value":3992,"currency":"USD","value_usd":3992},"apc_paid":{"value":3992,"currency":"USD","value_usd":3992},"fwci":1.3452,"has_fulltext":true,"cited_by_count":1,"citation_normalized_percentile":{"value":0.72165518,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"54","issue":"15","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9643999934196472,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9643999934196472,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.017799999564886093,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.0034000000450760126,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-rna-interactions","display_name":"RNA-protein interactions","score":0.7540000081062317},{"id":"https://openalex.org/keywords/density-gradient-sedimentation","display_name":"density gradient sedimentation","score":0.6430000066757202},{"id":"https://openalex.org/keywords/tho-complex","display_name":"THO complex","score":0.9539999961853027},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.9169999957084656},{"id":"https://openalex.org/keywords/schizosaccharomyces-pombe","display_name":"Schizosaccharomyces pombe","score":0.9990000128746033},{"id":"https://openalex.org/keywords/rna-metabolism","display_name":"RNA metabolism","score":0.6740000247955322}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8478999733924866},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.6952999830245972},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.6603000164031982},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.6205000281333923},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5825999975204468},{"id":"https://openalex.org/C41282012","wikidata":"https://www.wikidata.org/wiki/Q3928341","display_name":"RNA-binding protein","level":4,"score":0.48069998621940613},{"id":"https://openalex.org/C2779429346","wikidata":"https://www.wikidata.org/wiki/Q2236682","display_name":"Schizosaccharomyces pombe","level":4,"score":0.47870001196861267},{"id":"https://openalex.org/C2779478453","wikidata":"https://www.wikidata.org/wiki/Q6889748","display_name":"Modularity (biology)","level":2,"score":0.41839998960494995},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.38850000500679016},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.37779998779296875},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.35929998755455017},{"id":"https://openalex.org/C88478588","wikidata":"https://www.wikidata.org/wiki/Q42244","display_name":"Ribosome","level":4,"score":0.3522999882698059},{"id":"https://openalex.org/C199216141","wikidata":"https://www.wikidata.org/wiki/Q4995178","display_name":"Conserved sequence","level":4,"score":0.32179999351501465},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.319599986076355},{"id":"https://openalex.org/C46111723","wikidata":"https://www.wikidata.org/wiki/Q471857","display_name":"Proteomics","level":3,"score":0.31859999895095825},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.3077999949455261},{"id":"https://openalex.org/C2992769111","wikidata":"https://www.wikidata.org/wiki/Q830465","display_name":"Core protein","level":2,"score":0.29679998755455017},{"id":"https://openalex.org/C51639874","wikidata":"https://www.wikidata.org/wiki/Q167149","display_name":"Plasma protein binding","level":2,"score":0.2784999907016754},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.2773999869823456},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.2694000005722046},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.265500009059906},{"id":"https://openalex.org/C2910135453","wikidata":"https://www.wikidata.org/wiki/Q3122802","display_name":"Fungal protein","level":4,"score":0.2603999972343445},{"id":"https://openalex.org/C104397665","wikidata":"https://www.wikidata.org/wiki/Q860947","display_name":"Proteome","level":2,"score":0.2524000108242035}],"mesh":[{"descriptor_ui":"D012313","descriptor_name":"RNA","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012331","descriptor_name":"RNA, Fungal","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D012568","descriptor_name":"Schizosaccharomyces","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D016601","descriptor_name":"RNA-Binding Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D029702","descriptor_name":"Schizosaccharomyces pombe Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D029702","descriptor_name":"Schizosaccharomyces pombe Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D029702","descriptor_name":"Schizosaccharomyces pombe Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/nar/gkag799","doi":"https://doi.org/10.1093/nar/gkag799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkag799","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},{"id":"doi:10.1101/2024.12.06.627129","doi":"https://doi.org/10.1101/2024.12.06.627129","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2024.12.06.627129","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:13469068","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13469068/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13469068/pdf/","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Res","raw_type":"Text"},{"id":"pmid:42598851","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42598851","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic acids research","raw_type":"Journal Article"},{"id":"doi:10.22029/jlupub-21562","doi":"https://doi.org/10.22029/jlupub-21562","is_oa":true,"landing_page_url":"https://doi.org/10.22029/jlupub-21562","pdf_url":null,"source":{"id":"https://openalex.org/S7407052994","display_name":"Universit\u00e4tsbibliothek Gie\u00dfen","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I200763008","host_organization_name":"Justus-Liebig-Universit\u00e4t Gie\u00dfen","host_organization_lineage":["https://openalex.org/I200763008"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1093/nar/gkag799","doi":"https://doi.org/10.1093/nar/gkag799","is_oa":true,"landing_page_url":"https://doi.org/10.1093/nar/gkag799","pdf_url":null,"source":{"id":"https://openalex.org/S134668137","display_name":"Nucleic Acids Research","issn_l":"0305-1048","issn":["0305-1048","1362-4954","1362-4962"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-scientific","cwts-core","doaj","dongbi-a","doyens","jufo-3","ki-jl-3","medline","norway-2","oarl","poland-200","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310311648","host_organization_name":"Oxford University Press","host_organization_lineage":["https://openalex.org/P4310311648","https://openalex.org/P4310311647"],"host_organization_lineage_names":["Oxford University Press","University of Oxford"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Nucleic Acids Research","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320338335","display_name":"H2020 European Research Council","ror":"https://ror.org/0472cxd90"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7202389326.pdf","grobid_xml":"https://content.openalex.org/works/W7202389326.grobid-xml"},"referenced_works_count":86,"referenced_works":["https://openalex.org/W1964620170","https://openalex.org/W1986911150","https://openalex.org/W1995842607","https://openalex.org/W2001932825","https://openalex.org/W2015175027","https://openalex.org/W2021863432","https://openalex.org/W2027930539","https://openalex.org/W2029766654","https://openalex.org/W2033253992","https://openalex.org/W2041440237","https://openalex.org/W2045949302","https://openalex.org/W2057285764","https://openalex.org/W2082749639","https://openalex.org/W2089070004","https://openalex.org/W2106101308","https://openalex.org/W2113525941","https://openalex.org/W2144359476","https://openalex.org/W2149361626","https://openalex.org/W2156564520","https://openalex.org/W2182726182","https://openalex.org/W2194986544","https://openalex.org/W2220329357","https://openalex.org/W2229093700","https://openalex.org/W2233603983","https://openalex.org/W2283206150","https://openalex.org/W2343356574","https://openalex.org/W2460436629","https://openalex.org/W2470137797","https://openalex.org/W2524503478","https://openalex.org/W2561700798","https://openalex.org/W2582865571","https://openalex.org/W2604778851","https://openalex.org/W2731784911","https://openalex.org/W2761898164","https://openalex.org/W2809050290","https://openalex.org/W2894897551","https://openalex.org/W2904975846","https://openalex.org/W2907992023","https://openalex.org/W2917101543","https://openalex.org/W2940190333","https://openalex.org/W2943588752","https://openalex.org/W2943855616","https://openalex.org/W2949838170","https://openalex.org/W2954785163","https://openalex.org/W2969234256","https://openalex.org/W2970988943","https://openalex.org/W2971953231","https://openalex.org/W2982459873","https://openalex.org/W2990024506","https://openalex.org/W2991591294","https://openalex.org/W2997821271","https://openalex.org/W3000377151","https://openalex.org/W3006890195","https://openalex.org/W3036831525","https://openalex.org/W3041183625","https://openalex.org/W3053593167","https://openalex.org/W3101069359","https://openalex.org/W3114654315","https://openalex.org/W3148224713","https://openalex.org/W3209545809","https://openalex.org/W4242289937","https://openalex.org/W4296293215","https://openalex.org/W4307843054","https://openalex.org/W4308834828","https://openalex.org/W4313223661","https://openalex.org/W4316927799","https://openalex.org/W4317738161","https://openalex.org/W4362608040","https://openalex.org/W4366238719","https://openalex.org/W4372332501","https://openalex.org/W4378527517","https://openalex.org/W4382931278","https://openalex.org/W4384162582","https://openalex.org/W4390022322","https://openalex.org/W4391808031","https://openalex.org/W4391962939","https://openalex.org/W4392091326","https://openalex.org/W4394579804","https://openalex.org/W4399552145","https://openalex.org/W4402622568","https://openalex.org/W4403097691","https://openalex.org/W4405580682","https://openalex.org/W4408247125","https://openalex.org/W4412133288","https://openalex.org/W6893660513","https://openalex.org/W7125522619"],"related_works":["https://openalex.org/W4405141358","https://openalex.org/W3006890195","https://openalex.org/W2943855616","https://openalex.org/W4312127222","https://openalex.org/W4366238719","https://openalex.org/W2074405508","https://openalex.org/W2982459873","https://openalex.org/W2136312358","https://openalex.org/W6940970191","https://openalex.org/W4408247125"],"abstract_inverted_index":{"Delineating":[0],"the":[1,14,38,62,82,126,143,147,155,166],"constituents":[2],"and":[3,20,35,44,64,94,185],"structural":[4,163],"composition":[5],"of":[6,32,66,86,108,128,131,146,157,165,196],"RNA-associated":[7],"protein":[8,59,132],"complexes":[9,36,133],"is":[10],"essential":[11],"to":[12,57,96,160],"mapping":[13],"molecular":[15],"machinery":[16],"driving":[17],"RNA":[18,70,79,87,183],"metabolism":[19],"its":[21],"impact":[22],"on":[23],"cellular":[24],"function.":[25],"Here,":[26],"we":[27,140],"present":[28],"a":[29,75,105,177,189],"comprehensive":[30],"dataset":[31],"RNA-dependent":[33,109],"proteins":[34,90,110],"in":[37,61,91,119,154,182],"phylogenetically":[39],"distant":[40],"yeasts":[41],"Saccharomyces":[42],"cerevisiae":[43,149],"Schizosaccharomyces":[45],"pombe.":[46],"Using":[47],"R-DeeP-a":[48],"density":[49],"gradient-based":[50],"method":[51],"that":[52,142],"uses":[53],"quantitative":[54],"mass":[55],"spectrometry":[56],"profile":[58],"sedimentation":[60],"presence":[63],"absence":[65,156],"RNA-we":[67],"introduce":[68],"an":[69,161],"dependence":[71,88],"index":[72],"(RDI)":[73],"as":[74,188],"descriptive":[76],"framework":[77],"for":[78,179,193],"dependence,":[80],"enabling":[81],"robust":[83],"comparative":[84,194],"analysis":[85,127,195],"across":[89,112],"both":[92,113],"species":[93],"relative":[95],"existing":[97],"data":[98,123],"from":[99],"their":[100],"human":[101],"counterparts.":[102],"This":[103],"identifies":[104],"conserved":[106],"core":[107],"shared":[111],"yeasts,":[114],"alongside":[115],"distinct,":[116],"organism-specific":[117],"adaptations":[118],"complex":[120,151],"behaviour.":[121],"The":[122,170],"further":[124],"support":[125],"co-sedimentation":[129],"behaviour":[130],"with":[134],"known":[135],"RNA-directed":[136],"functions.":[137],"For":[138],"instance,":[139],"find":[141],"five":[144],"subunits":[145],"S.":[148],"THO":[150],"only":[152],"co-sediment":[153],"RNA,":[158],"pointing":[159],"underappreciated":[162],"modularity":[164],"well-characterized":[167],"pentameric":[168],"complex.":[169],"two":[171],"datasets,":[172],"available":[173],"at":[174],"https://yeast-r-deep.computational.bio/,":[175],"provide":[176],"resource":[178],"hypothesis-driven":[180],"research":[181],"biology":[184],"establish":[186],"R-DeeP":[187],"broadly":[190],"applicable":[191],"tool":[192],"RNA-protein":[197],"interactions.":[198]},"counts_by_year":[{"year":2026,"cited_by_count":1}],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-08-14T00:00:00"}
