{"id":"https://openalex.org/W7202253382","doi":"https://doi.org/10.5281/zenodo.21895905","title":"ZFScanner: trained models and analysis result tables for flatbed-scanner zebrafish developmental screening","display_name":"ZFScanner: trained models and analysis result tables for flatbed-scanner zebrafish developmental screening","publication_year":2026,"publication_date":"2026-08-12","ids":{"openalex":"https://openalex.org/W7202253382","doi":"https://doi.org/10.5281/zenodo.21895905"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.21895905","doi":"https://doi.org/10.5281/zenodo.21895905","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.21895905","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.21895905","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064673366","display_name":"Hyunmo Yang","orcid":"https://orcid.org/0000-0001-8384-8119","observed_orcids":["https://orcid.org/0000-0001-8384-8119"]},"institutions":[{"id":"https://openalex.org/I48566637","display_name":"Ulsan National Institute of Science and Technology","ror":"https://ror.org/017cjz748","country_code":"KR","type":"education","lineage":["https://openalex.org/I48566637"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yang, Hyunmo","raw_affiliation_strings":["Ulsan National Institute of Science and Technology (UNIST)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ulsan National Institute of Science and Technology (UNIST)","institution_ids":["https://openalex.org/I48566637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058597266","display_name":"Geoseong Na","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I48566637","display_name":"Ulsan National Institute of Science and Technology","ror":"https://ror.org/017cjz748","country_code":"KR","type":"education","lineage":["https://openalex.org/I48566637"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Na, Geoseong","raw_affiliation_strings":["Ulsan National Institute of Science and Technology (UNIST)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ulsan National Institute of Science and Technology (UNIST)","institution_ids":["https://openalex.org/I48566637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108859129","display_name":"Unbeom Shin","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Shin, Unbeom","raw_affiliation_strings":["Center for Genomic Integrity, Institute for Basic Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomic Integrity, Institute for Basic Science","institution_ids":["https://openalex.org/I4210104335"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037793279","display_name":"Hwa Soo Ko","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I48566637","display_name":"Ulsan National Institute of Science and Technology","ror":"https://ror.org/017cjz748","country_code":"KR","type":"education","lineage":["https://openalex.org/I48566637"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Ko, Hwa Soo","raw_affiliation_strings":["Ulsan National Institute of Science and Technology (UNIST)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ulsan National Institute of Science and Technology (UNIST)","institution_ids":["https://openalex.org/I48566637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135308514","display_name":"Seongmin Yun","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I48566637","display_name":"Ulsan National Institute of Science and Technology","ror":"https://ror.org/017cjz748","country_code":"KR","type":"education","lineage":["https://openalex.org/I48566637"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Yun, Seongmin","raw_affiliation_strings":["Ulsan National Institute of Science and Technology (UNIST)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ulsan National Institute of Science and Technology (UNIST)","institution_ids":["https://openalex.org/I48566637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045299545","display_name":"Kyungjae Myung","orcid":"https://orcid.org/0000-0001-7975-6190","observed_orcids":["https://orcid.org/0000-0001-7975-6190"]},"institutions":[{"id":"https://openalex.org/I4210104335","display_name":"Institute for Basic Science","ror":"https://ror.org/00y0zf565","country_code":"KR","type":"facility","lineage":["https://openalex.org/I4210104335"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Myung, Kyungjae","raw_affiliation_strings":["Center for Genomic Integrity, Institute for Basic Science"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Genomic Integrity, Institute for Basic Science","institution_ids":["https://openalex.org/I4210104335"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075058925","display_name":"Taejoon Kwon","orcid":"https://orcid.org/0000-0002-9794-6112","observed_orcids":["https://orcid.org/0000-0002-9794-6112"]},"institutions":[{"id":"https://openalex.org/I48566637","display_name":"Ulsan National Institute of Science and Technology","ror":"https://ror.org/017cjz748","country_code":"KR","type":"education","lineage":["https://openalex.org/I48566637"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Kwon, Taejoon","raw_affiliation_strings":["Ulsan National Institute of Science and Technology (UNIST)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ulsan National Institute of Science and Technology (UNIST)","institution_ids":["https://openalex.org/I48566637"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032420755","display_name":"Yoonsung Lee","orcid":"https://orcid.org/0000-0001-9934-2390","observed_orcids":["https://orcid.org/0000-0001-9934-2390"]},"institutions":[{"id":"https://openalex.org/I35928602","display_name":"Kyung Hee University","ror":"https://ror.org/01zqcg218","country_code":"KR","type":"education","lineage":["https://openalex.org/I35928602"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Lee, Yoonsung","raw_affiliation_strings":["Kyung Hee University"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Kyung Hee University","institution_ids":["https://openalex.org/I35928602"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5031643466","display_name":"Woonggyu Jung","orcid":"https://orcid.org/0000-0001-7424-3679","observed_orcids":["https://orcid.org/0000-0001-7424-3679"]},"institutions":[{"id":"https://openalex.org/I48566637","display_name":"Ulsan National Institute of Science and Technology","ror":"https://ror.org/017cjz748","country_code":"KR","type":"education","lineage":["https://openalex.org/I48566637"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Jung, Woonggyu","raw_affiliation_strings":["Ulsan National Institute of Science and Technology (UNIST)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Ulsan National Institute of Science and Technology (UNIST)","institution_ids":["https://openalex.org/I48566637"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9243000149726868,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11685","display_name":"Zebrafish Biomedical Research Applications","score":0.9243000149726868,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.06669999659061432,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.0015999999595806003,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/automated-phenotyping","display_name":"automated phenotyping","score":0.6159999966621399},{"id":"https://openalex.org/keywords/body-segmentation","display_name":"body segmentation","score":0.7080000042915344},{"id":"https://openalex.org/keywords/eye-segmentation","display_name":"eye segmentation","score":0.9919999837875366},{"id":"https://openalex.org/keywords/ddb1","display_name":"DDB1","score":0.9940000176429749},{"id":"https://openalex.org/keywords/occlusion-sensitivity","display_name":"occlusion sensitivity","score":0.6850000023841858},{"id":"https://openalex.org/keywords/linear-discriminant-analysis","display_name":"linear discriminant analysis","score":0.7929999828338623}],"concepts":[{"id":"https://openalex.org/C2780297707","wikidata":"https://www.wikidata.org/wiki/Q4895393","display_name":"Landmark","level":2,"score":0.7355999946594238},{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.6700000166893005},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6319000124931335},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.604200005531311},{"id":"https://openalex.org/C2776760102","wikidata":"https://www.wikidata.org/wiki/Q5139990","display_name":"Code (set theory)","level":3,"score":0.49889999628067017},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.46050000190734863},{"id":"https://openalex.org/C28719098","wikidata":"https://www.wikidata.org/wiki/Q44946","display_name":"Point (geometry)","level":2,"score":0.42669999599456787},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.36570000648498535},{"id":"https://openalex.org/C2776878037","wikidata":"https://www.wikidata.org/wiki/Q169444","display_name":"Zebrafish","level":3,"score":0.3409999907016754},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.3125},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.2978000044822693},{"id":"https://openalex.org/C60627051","wikidata":"https://www.wikidata.org/wiki/Q1072278","display_name":"Body shape","level":2,"score":0.29030001163482666},{"id":"https://openalex.org/C2781197403","wikidata":"https://www.wikidata.org/wiki/Q193472","display_name":"Trunk","level":2,"score":0.27549999952316284},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2621999979019165},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.25929999351501465},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.2556000053882599}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.5281/zenodo.21895905","doi":"https://doi.org/10.5281/zenodo.21895905","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.21895905","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.21895906","doi":"https://doi.org/10.5281/zenodo.21895906","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.21895906","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.21895905","doi":"https://doi.org/10.5281/zenodo.21895905","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.21895905","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W7202280980","https://openalex.org/W4214937072","https://openalex.org/W1916523072","https://openalex.org/W2617743919","https://openalex.org/W1591305080","https://openalex.org/W7159763311","https://openalex.org/W2616076655","https://openalex.org/W2183866846","https://openalex.org/W2044777781","https://openalex.org/W2585165680"],"abstract_inverted_index":{"Trained":[0],"model":[1],"weights":[2,175],"and":[3,19,48,55,62,82,90,93,110,170],"analysis":[4,21],"result":[5,67],"tables":[6,162],"for":[7,46,189],"the":[8,15,20,31,36,41,51,56,66,83,94,103,116,127,141,146,155,165,179,187,190],"ZFScanner":[9],"zebrafish":[10],"developmental-screening":[11],"pipeline.":[12],"Together":[13],"with":[14,78,115,126],"well-image":[16],"dataset":[17],"(10.5281/zenodo.21868073)":[18],"code":[22,147],"(https://github.com/hmyang-UNIST/ZFScanner),":[23],"these":[24,161],"files":[25],"reproduce":[26],"every":[27,152],"panel":[28],"reported":[29],"in":[30,145,186],"paper.":[32],"Contents":[33],"models/":[34],"\u2014":[35,65,102,123,135],"five":[37],"trained":[38],"networks":[39],"behind":[40],"published":[42],"results:":[43],"two":[44,57],"U-Nets":[45],"body":[47],"eye":[49],"segmentation,":[50],"ten-point":[52],"landmark":[53,113],"regressor,":[54],"ResNet-18":[58],"screening":[59,138],"models":[60],"(atad5a":[61],"ddb1).":[63],"csv/":[64],"tables,":[68],"headed":[69],"by":[70],"qinfo.csv:":[71],"twenty":[72],"phenotypic":[73],"features":[74],"per":[75],"quantified":[76],"image,":[77],"genotype,":[79],"developmental":[80],"time":[81],"train/test":[84],"partition.":[85],"The":[86],"per-feature":[87],"AUCs,":[88],"LDA":[89],"image-based":[91],"predictions,":[92],"scanner-versus-microscope":[95],"measurements":[96],"are":[97,176,182],"here":[98],"as":[99],"well.":[100],"manual-labels/":[101],"human":[104],"ground":[105],"truth:":[106],"245":[107],"segmentation":[108],"masks":[109],"409":[111],"annotated":[112],"sets,":[114],"images":[117],"they":[118],"were":[119],"drawn":[120,159],"on.":[121],"blind-predictions/":[122],"occlusion-sensitivity":[124],"scores":[125],"head,":[128],"yolk":[129],"or":[130],"trunk":[131],"blacked":[132],"out.":[133],"lda-results/":[134],"per-condition":[136],"feature-based":[137],"tables.":[139],"Reproducing":[140],"figures.":[142],"Point":[143],"configs/paths.yaml":[144],"repository":[148,188],"at":[149],"this":[150],"archive;":[151],"figure":[153],"except":[154],"representative":[156],"time-lapse":[157],"is":[158],"from":[160],"alone,":[163],"without":[164,171],"27":[166],"GB":[167],"image":[168],"archive":[169],"a":[172],"GPU.":[173],"Model":[174],"included,":[177],"so":[178],"training":[180],"scripts":[181],"optional.":[183],"See":[184],"docs/reproduction.md":[185],"panel-by-panel":[191],"map.":[192]},"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2026-08-13T00:00:00"}