{"id":"https://openalex.org/W7168024191","doi":"https://doi.org/10.1007/s10722-026-02862-0","title":"The first chloroplast genome of rare Japanese peony Paeonia suffruticosa \u2018Cun Song Ying\u2019: comparative genomics and maternal origin insight","display_name":"The first chloroplast genome of rare Japanese peony Paeonia suffruticosa \u2018Cun Song Ying\u2019: comparative genomics and maternal origin insight","publication_year":2026,"publication_date":"2026-07-11","ids":{"openalex":"https://openalex.org/W7168024191","doi":"https://doi.org/10.1007/s10722-026-02862-0"},"language":"en","primary_location":{"id":"doi:10.1007/s10722-026-02862-0","doi":"https://doi.org/10.1007/s10722-026-02862-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10722-026-02862-0","pdf_url":null,"source":{"id":"https://openalex.org/S96567077","display_name":"Genetic Resources and Crop Evolution","issn_l":"0925-9864","issn":["0925-9864","1573-5109"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genetic Resources and Crop Evolution","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.researchsquare.com/article/rs-9340796/latest.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070595757","display_name":"Wenzhen Cheng","orcid":"https://orcid.org/0000-0003-2517-9564","observed_orcids":["https://orcid.org/0000-0003-2517-9564"]},"institutions":[{"id":"https://openalex.org/I4210136682","display_name":"Heze University","ror":"https://ror.org/041zje040","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136682"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenzhen Cheng","raw_affiliation_strings":["College of Agriculture and Bioengineering, Heze University, Heze, 274000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Agriculture and Bioengineering, Heze University, Heze, 274000, China","institution_ids":["https://openalex.org/I4210136682"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077096044","display_name":"Conghao Hong","orcid":"https://orcid.org/0000-0003-1286-8192","observed_orcids":["https://orcid.org/0000-0003-1286-8192"]},"institutions":[{"id":"https://openalex.org/I31683504","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41","country_code":"CN","type":"education","lineage":["https://openalex.org/I1327237609","https://openalex.org/I31683504","https://openalex.org/I4210127390"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Conghao Hong","raw_affiliation_strings":["College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Biological Sciences and Technology, Beijing Forestry University, Beijing, 100083, China","institution_ids":["https://openalex.org/I31683504"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5135512460","display_name":"Mingyu Li","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I4405279509","display_name":"Shanghai Construction Management Vocational College","ror":"https://ror.org/01k9xn712","country_code":"CN","type":"education","lineage":["https://openalex.org/I4405279509"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mingyu Li","raw_affiliation_strings":["Shanghai Construction Management Vocational College, Shanghai, 201702, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Shanghai Construction Management Vocational College, Shanghai, 201702, China","institution_ids":["https://openalex.org/I4405279509"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044468372","display_name":"Changyong Gao","orcid":"https://orcid.org/0000-0001-8137-7894","observed_orcids":["https://orcid.org/0000-0001-8137-7894"]},"institutions":[{"id":"https://openalex.org/I4210136682","display_name":"Heze University","ror":"https://ror.org/041zje040","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210136682"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Changyong Gao","raw_affiliation_strings":["College of Agriculture and Bioengineering, Heze University, Heze, 274000, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Agriculture and Bioengineering, Heze University, Heze, 274000, China","institution_ids":["https://openalex.org/I4210136682"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044468372","https://openalex.org/A5135512460"],"corresponding_institution_ids":["https://openalex.org/I4210136682","https://openalex.org/I4405279509"],"apc_list":{"value":2690,"currency":"USD","value_usd":2690},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.0,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"73","issue":"6","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.8345000147819519,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.8345000147819519,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.09690000116825104,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13168","display_name":"Plant Ecology and Taxonomy Studies","score":0.03009999915957451,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/paeonia-suffruticosa","display_name":"Paeonia suffruticosa","score":0.921999990940094},{"id":"https://openalex.org/keywords/paeoniaceae","display_name":"Paeoniaceae","score":0.7400000095367432},{"id":"https://openalex.org/keywords/chloroplast-genome","display_name":"chloroplast genome","score":0.9940000176429749},{"id":"https://openalex.org/keywords/maternal-origin","display_name":"maternal origin","score":0.6420000195503235},{"id":"https://openalex.org/keywords/phylogenetic-relationships","display_name":"phylogenetic relationships","score":0.7979999780654907},{"id":"https://openalex.org/keywords/comparative-genomics","display_name":"comparative genomics","score":0.6439999938011169},{"id":"https://openalex.org/keywords/tandem-repeats","display_name":"tandem repeats","score":0.7369999885559082},{"id":"https://openalex.org/keywords/microsatellite-markers","display_name":"microsatellite markers","score":0.8429999947547913},{"id":"https://openalex.org/keywords/codon-usage-bias","display_name":"codon usage bias","score":0.9850000143051147},{"id":"https://openalex.org/keywords/cultivar-identification","display_name":"cultivar identification","score":0.6309999823570251}],"concepts":[{"id":"https://openalex.org/C2780032014","wikidata":"https://www.wikidata.org/wiki/Q163018","display_name":"Paeonia suffruticosa","level":2,"score":0.9246000051498413},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8758000135421753},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.781000018119812},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.7024999856948853},{"id":"https://openalex.org/C105176652","wikidata":"https://www.wikidata.org/wiki/Q1147112","display_name":"Comparative genomics","level":5,"score":0.6211000084877014},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5514000058174133},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.5271999835968018},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.5246000289916992},{"id":"https://openalex.org/C51603236","wikidata":"https://www.wikidata.org/wiki/Q4852694","display_name":"Inverted repeat","level":4,"score":0.42010000348091125},{"id":"https://openalex.org/C69305403","wikidata":"https://www.wikidata.org/wiki/Q47263","display_name":"Chloroplast","level":3,"score":0.4018999934196472},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.383899986743927},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.37610000371932983},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.3653999865055084},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3652999997138977},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.35659998655319214},{"id":"https://openalex.org/C48050816","wikidata":"https://www.wikidata.org/wiki/Q3182853","display_name":"Chloroplast DNA","level":4,"score":0.32190001010894775},{"id":"https://openalex.org/C61271108","wikidata":"https://www.wikidata.org/wiki/Q3180866","display_name":"Genome size","level":4,"score":0.3151000142097473},{"id":"https://openalex.org/C66582369","wikidata":"https://www.wikidata.org/wiki/Q1567633","display_name":"Sister group","level":5,"score":0.28529998660087585},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.2669000029563904},{"id":"https://openalex.org/C22322919","wikidata":"https://www.wikidata.org/wiki/Q5533501","display_name":"Genomic organization","level":4,"score":0.26600000262260437},{"id":"https://openalex.org/C81566733","wikidata":"https://www.wikidata.org/wiki/Q1047544","display_name":"Hypervariable region","level":3,"score":0.26339998841285706},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.260699987411499}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1007/s10722-026-02862-0","doi":"https://doi.org/10.1007/s10722-026-02862-0","is_oa":false,"landing_page_url":"https://doi.org/10.1007/s10722-026-02862-0","pdf_url":null,"source":{"id":"https://openalex.org/S96567077","display_name":"Genetic Resources and Crop Evolution","issn_l":"0925-9864","issn":["0925-9864","1573-5109"],"is_oa":false,"is_in_doaj":false,"is_core":true,"listed_in":["anvur-scientific","cwts-core","dongbi-c","jufo-1","norway-1","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319900","host_organization_name":"Springer Science+Business Media","host_organization_lineage":["https://openalex.org/P4310319900","https://openalex.org/P4310319965"],"host_organization_lineage_names":["Springer Science+Business Media","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genetic Resources and Crop Evolution","raw_type":"journal-article"},{"id":"doi:10.21203/rs.3.rs-9340796/v1","doi":"https://doi.org/10.21203/rs.3.rs-9340796/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-9340796/v1","pdf_url":"https://www.researchsquare.com/article/rs-9340796/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"}],"best_oa_location":{"id":"doi:10.21203/rs.3.rs-9340796/v1","doi":"https://doi.org/10.21203/rs.3.rs-9340796/v1","is_oa":true,"landing_page_url":"https://doi.org/10.21203/rs.3.rs-9340796/v1","pdf_url":"https://www.researchsquare.com/article/rs-9340796/latest.pdf","source":{"id":"https://openalex.org/S4306525896","display_name":"Research Square","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Research Square","raw_type":"posted-content"},"sustainable_development_goals":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.40450000762939453}],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320319258","display_name":"International Center for Agricultural Research in the Dry Areas","ror":"https://ror.org/02n2syw04"},{"id":"https://openalex.org/F4320325563","display_name":"Heze University","ror":"https://ror.org/041zje040"},{"id":"https://openalex.org/F4320327478","display_name":"Beijing Forestry University","ror":"https://ror.org/04xv2pc41"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7168024191.pdf","grobid_xml":"https://content.openalex.org/works/W7168024191.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1969042907","https://openalex.org/W2023515240","https://openalex.org/W2027448315","https://openalex.org/W2060804705","https://openalex.org/W2124281279","https://openalex.org/W2141052558","https://openalex.org/W2148698435","https://openalex.org/W2148734328","https://openalex.org/W2152812151","https://openalex.org/W2160378127","https://openalex.org/W2475158195","https://openalex.org/W2535995078","https://openalex.org/W2612261225","https://openalex.org/W2623416841","https://openalex.org/W2625782695","https://openalex.org/W2735092275","https://openalex.org/W2755331695","https://openalex.org/W2789559478","https://openalex.org/W2789812984","https://openalex.org/W2801740796","https://openalex.org/W2944798675","https://openalex.org/W2947095953","https://openalex.org/W2953289982","https://openalex.org/W3046376797","https://openalex.org/W3049493103","https://openalex.org/W3084201551","https://openalex.org/W3204148307","https://openalex.org/W3217031179","https://openalex.org/W4220700432","https://openalex.org/W4280574849","https://openalex.org/W4295980892","https://openalex.org/W4317380946","https://openalex.org/W4372334310","https://openalex.org/W4387357388","https://openalex.org/W4392304013","https://openalex.org/W4401854478","https://openalex.org/W4404545876","https://openalex.org/W4406033916","https://openalex.org/W4407167287","https://openalex.org/W4407790874","https://openalex.org/W4409096922","https://openalex.org/W7095603021"],"related_works":["https://openalex.org/W4415073779","https://openalex.org/W4405635350","https://openalex.org/W3016086734","https://openalex.org/W2909011693","https://openalex.org/W2931490801","https://openalex.org/W2746226356","https://openalex.org/W4310215423","https://openalex.org/W2696056715","https://openalex.org/W3125600156","https://openalex.org/W4390176614"],"abstract_inverted_index":{"Abstract":[0],"\u2022":[1,66,110,156],"Paeonia":[2],"suffruticosa":[3,37,146],"\u2018Cun":[4,38,91,174],"Song":[5,39,92,175],"Ying\u2019":[6,40,93],"is":[7,142],"a":[8,54,117],"rare":[9],"Japanese":[10],"horticultural":[11],"variety":[12],"with":[13,70,82,130],"significant":[14],"ornamental":[15],"value,":[16],"but":[17],"its":[18,46],"genomic":[19,47,162,180],"characteristics":[20,169],"and":[21,48,63,79,107,141,170,177,189],"phylogenetic":[22,108,171],"status":[23],"remain":[24],"unreported.":[25],"This":[26,157],"study":[27,158],"reports":[28],"the":[29,43,160,167],"first":[30],"complete":[31],"chloroplast":[32,161],"(cp)":[33],"genome":[34,76,89,115],"of":[35,90,99,164,173],"P.":[36,145],"to":[41,52,144],"fill":[42],"gap":[44],"in":[45,97],"evolutionary":[49,168],"research,":[50,62],"aiming":[51],"provide":[53],"theoretical":[55],"basis":[56],"for":[57,75,183],"peony":[58,184],"cultivar":[59,185],"identification,":[60,186],"origin":[61,187],"breeding":[64],"protection.":[65],"High-throughput":[67],"sequencing":[68],"combined":[69],"bioinformatics":[71],"tools":[72],"was":[73,94],"used":[74],"assembly,":[77],"annotation,":[78],"comparative":[80],"analyses":[81],"15":[83],"related":[84],"Paeoniaceae":[85],"species.":[86],"The":[87,111],"cp":[88,114],"systematically":[95],"characterized":[96],"terms":[98],"structural":[100],"features,":[101],"repetitive":[102],"sequences,":[103],"codon":[104],"usage":[105],"bias,":[106],"relationships.":[109],"152,704":[112],"bp":[113],"has":[116],"typical":[118],"quadripartite":[119],"structure":[120],"(LSC:84,365":[121],"bp;":[122,124],"SSC:17,047":[123],"IR:25,646":[125],"bp\u00d72),":[126],"encodes":[127],"138":[128],"genes,":[129],"6":[131],"hypervariable":[132],"regions,":[133],"43":[134],"tandem":[135],"repeats,":[136],"73":[137],"SSRs,":[138],"A/U-preferred":[139],"codons,":[140],"sister":[143],"\u2018Luo":[147],"Yang":[148],"Hong\u2019":[149],"(BS":[150],"=":[151,154],"100,":[152],"PP":[153],"1.00).":[155],"enriches":[159],"resources":[163],"Paeoniaceae,":[165],"clarifies":[166],"position":[172],"Ying\u2019,":[176],"provides":[178],"important":[179],"data":[181],"support":[182],"tracing,":[188],"genetic":[190],"breeding.":[191]},"counts_by_year":[],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-07-12T00:00:00"}
