{"id":"https://openalex.org/W7167344508","doi":"https://doi.org/10.1093/g3journal/jkag183","title":"Copy number variation: a substrate for plant adaptation and stress response in Arabidopsis","display_name":"Copy number variation: a substrate for plant adaptation and stress response in Arabidopsis","publication_year":2026,"publication_date":"2026-07-04","ids":{"openalex":"https://openalex.org/W7167344508","doi":"https://doi.org/10.1093/g3journal/jkag183","pmid":"https://pubmed.ncbi.nlm.nih.gov/42400356","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13732473"},"language":"en","primary_location":{"id":"doi:10.1093/g3journal/jkag183","doi":"https://doi.org/10.1093/g3journal/jkag183","is_oa":true,"landing_page_url":"https://doi.org/10.1093/g3journal/jkag183","pdf_url":null,"source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3: Genes, Genomes, Genetics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1093/g3journal/jkag183","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5015218304","display_name":"Piyal Karunarathne","orcid":"https://orcid.org/0000-0002-1934-145X","observed_orcids":["https://orcid.org/0000-0002-1934-145X"]},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Piyal Karunarathne","raw_affiliation_strings":["Institute of Population Genetics, Heinrich-Heine University , Universit\u00e4ts Str. 1, D\u00fcsseldorf 40225 ,"],"raw_orcid":"https://orcid.org/0000-0002-1934-145X","affiliations":[{"raw_affiliation_string":"Institute of Population Genetics, Heinrich-Heine University , Universit\u00e4ts Str. 1, D\u00fcsseldorf 40225 ,","institution_ids":["https://openalex.org/I44260953"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050231016","display_name":"Yannick Sch\u00e4fer","orcid":"https://orcid.org/0000-0002-5264-8816","observed_orcids":["https://orcid.org/0000-0002-5264-8816"]},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Yannick Sch\u00e4fer","raw_affiliation_strings":["Institute for Genetics, University of Cologne , Z\u00fclpicher Str. 47a, Cologne 50674 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Genetics, University of Cologne , Z\u00fclpicher Str. 47a, Cologne 50674 ,","institution_ids":["https://openalex.org/I180923762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037971705","display_name":"Anna Glushkevich","orcid":"https://orcid.org/0000-0001-8869-7807","observed_orcids":["https://orcid.org/0000-0001-8869-7807"]},"institutions":[{"id":"https://openalex.org/I4210141639","display_name":"Max Planck Institute for Plant Breeding Research","ror":"https://ror.org/044g3zk14","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210141639"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anna Glushkevich","raw_affiliation_strings":["Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Carl-von-Linne-Weg 10, Cologne 50829 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Carl-von-Linne-Weg 10, Cologne 50829 ,","institution_ids":["https://openalex.org/I4210141639"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5028903910","display_name":"Alison Dawn Scott","orcid":"https://orcid.org/0000-0002-4508-2973","observed_orcids":["https://orcid.org/0000-0002-4508-2973"]},"institutions":[{"id":"https://openalex.org/I4210141639","display_name":"Max Planck Institute for Plant Breeding Research","ror":"https://ror.org/044g3zk14","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210141639"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alison D Scott","raw_affiliation_strings":["Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Carl-von-Linne-Weg 10, Cologne 50829 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Carl-von-Linne-Weg 10, Cologne 50829 ,","institution_ids":["https://openalex.org/I4210141639"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076452279","display_name":"Leen Abraham","orcid":"https://orcid.org/0000-0002-9122-6456","observed_orcids":["https://orcid.org/0000-0002-9122-6456"]},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Leen Abraham","raw_affiliation_strings":["Institute for Plant Sciences, University of Cologne , Z\u00fclpicher Str. 47b, Cologne 50674 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Plant Sciences, University of Cologne , Z\u00fclpicher Str. 47b, Cologne 50674 ,","institution_ids":["https://openalex.org/I180923762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039319309","display_name":"Juliette de Meaux","orcid":"https://orcid.org/0000-0002-2942-4750","observed_orcids":["https://orcid.org/0000-0002-2942-4750"]},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Juliette de Meaux","raw_affiliation_strings":["Institute for Plant Sciences, University of Cologne , Z\u00fclpicher Str. 47b, Cologne 50674 ,"],"raw_orcid":"https://orcid.org/0000-0002-2942-4750","affiliations":[{"raw_affiliation_string":"Institute for Plant Sciences, University of Cologne , Z\u00fclpicher Str. 47b, Cologne 50674 ,","institution_ids":["https://openalex.org/I180923762"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013549145","display_name":"Polina Yu. Novikova","orcid":"https://orcid.org/0000-0002-4552-4575","observed_orcids":["https://orcid.org/0000-0002-4552-4575"]},"institutions":[{"id":"https://openalex.org/I4210141639","display_name":"Max Planck Institute for Plant Breeding Research","ror":"https://ror.org/044g3zk14","country_code":"DE","type":"facility","lineage":["https://openalex.org/I149899117","https://openalex.org/I4210141639"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Polina Yu Novikova","raw_affiliation_strings":["Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Carl-von-Linne-Weg 10, Cologne 50829 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Chromosome Biology, Max Planck Institute for Plant Breeding Research , Carl-von-Linne-Weg 10, Cologne 50829 ,","institution_ids":["https://openalex.org/I4210141639"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067935909","display_name":"Thomas Wiehe","orcid":"https://orcid.org/0000-0002-8932-2772","observed_orcids":["https://orcid.org/0000-0002-8932-2772"]},"institutions":[{"id":"https://openalex.org/I180923762","display_name":"University of Cologne","ror":"https://ror.org/00rcxh774","country_code":"DE","type":"education","lineage":["https://openalex.org/I180923762"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Thomas Wiehe","raw_affiliation_strings":["Institute for Genetics, University of Cologne , Z\u00fclpicher Str. 47a, Cologne 50674 ,"],"raw_orcid":"https://orcid.org/0000-0002-8932-2772","affiliations":[{"raw_affiliation_string":"Institute for Genetics, University of Cologne , Z\u00fclpicher Str. 47a, Cologne 50674 ,","institution_ids":["https://openalex.org/I180923762"]}]},{"author_position":"last","author":{"id":null,"display_name":"Laura E Rose","orcid":null,"observed_orcids":[]},"institutions":[{"id":"https://openalex.org/I44260953","display_name":"Heinrich Heine University D\u00fcsseldorf","ror":"https://ror.org/024z2rq82","country_code":"DE","type":"education","lineage":["https://openalex.org/I44260953"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Laura E Rose","raw_affiliation_strings":["Institute of Population Genetics, Heinrich-Heine University , Universit\u00e4ts Str. 1, D\u00fcsseldorf 40225 ,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Population Genetics, Heinrich-Heine University , Universit\u00e4ts Str. 1, D\u00fcsseldorf 40225 ,","institution_ids":["https://openalex.org/I44260953"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5015218304"],"corresponding_institution_ids":["https://openalex.org/I44260953"],"apc_list":{"value":2709,"currency":"USD","value_usd":2709},"apc_paid":{"value":2709,"currency":"USD","value_usd":2709},"fwci":6.3076,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.9505988,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":97},"biblio":{"volume":"16","issue":"11","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9785000085830688,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13168","display_name":"Plant Ecology and Taxonomy Studies","score":0.004000000189989805,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.004000000189989805,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/copy-number-variation","display_name":"copy number variation","score":1.0},{"id":"https://openalex.org/keywords/gene-family-evolution","display_name":"gene family evolution","score":0.8410000205039978},{"id":"https://openalex.org/keywords/birth-death-model","display_name":"birth-death model","score":0.6890000104904175},{"id":"https://openalex.org/keywords/pseudogenization","display_name":"pseudogenization","score":0.6859999895095825},{"id":"https://openalex.org/keywords/genome-organization","display_name":"genome organization","score":0.5540000200271606},{"id":"https://openalex.org/keywords/plant-adaptation","display_name":"plant adaptation","score":0.7310000061988831},{"id":"https://openalex.org/keywords/environmental-organizations","display_name":"environmental organizations","score":0.574999988079071},{"id":"https://openalex.org/keywords/climate-change-adaptation","display_name":"climate change adaptation","score":0.824999988079071},{"id":"https://openalex.org/keywords/disease-resistance","display_name":"disease resistance","score":0.5360000133514404},{"id":"https://openalex.org/keywords/stress-response","display_name":"stress response","score":0.9380000233650208},{"id":"https://openalex.org/keywords/arabidopsis-thaliana","display_name":"Arabidopsis thaliana","score":0.8690000176429749},{"id":"https://openalex.org/keywords/arabidopsis-lyrata","display_name":"Arabidopsis lyrata","score":0.9990000128746033},{"id":"https://openalex.org/keywords/arabidopsis-halleri","display_name":"Arabidopsis halleri","score":0.8980000019073486},{"id":"https://openalex.org/keywords/arabis-alpina","display_name":"Arabis alpina","score":0.9929999709129333},{"id":"https://openalex.org/keywords/brassicaceae","display_name":"Brassicaceae","score":0.8930000066757202},{"id":"https://openalex.org/keywords/population-structure","display_name":"population structure","score":0.7440000176429749},{"id":"https://openalex.org/keywords/phylogeography","display_name":"phylogeography","score":0.8199999928474426},{"id":"https://openalex.org/keywords/gene-duplication","display_name":"gene duplication","score":0.3400000035762787}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.9261999726295471},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.5902000069618225},{"id":"https://openalex.org/C120821319","wikidata":"https://www.wikidata.org/wiki/Q1501491","display_name":"Copy-number variation","level":4,"score":0.5871000289916992},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.5752000212669373},{"id":"https://openalex.org/C2775988993","wikidata":"https://www.wikidata.org/wiki/Q158695","display_name":"Arabidopsis thaliana","level":4,"score":0.5730999708175659},{"id":"https://openalex.org/C2775943906","wikidata":"https://www.wikidata.org/wiki/Q156888","display_name":"Brassicaceae","level":2,"score":0.5212000012397766},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5013999938964844},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.48750001192092896},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4830000102519989},{"id":"https://openalex.org/C5911399","wikidata":"https://www.wikidata.org/wiki/Q2278983","display_name":"Gene family","level":4,"score":0.4675999879837036},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.44290000200271606},{"id":"https://openalex.org/C2776817793","wikidata":"https://www.wikidata.org/wiki/Q6553369","display_name":"Lineage (genetic)","level":3,"score":0.43299999833106995},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.4189000129699707},{"id":"https://openalex.org/C2780354846","wikidata":"https://www.wikidata.org/wiki/Q24962946","display_name":"Local adaptation","level":3,"score":0.41819998621940613},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.3971000015735626},{"id":"https://openalex.org/C153209595","wikidata":"https://www.wikidata.org/wiki/Q501128","display_name":"Single-nucleotide polymorphism","level":4,"score":0.3968000113964081},{"id":"https://openalex.org/C87590526","wikidata":"https://www.wikidata.org/wiki/Q3592884","display_name":"Experimental evolution","level":3,"score":0.38199999928474426},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.350600004196167},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.33390000462532043},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.32899999618530273},{"id":"https://openalex.org/C174600577","wikidata":"https://www.wikidata.org/wiki/Q5533491","display_name":"Genome evolution","level":4,"score":0.328900009393692},{"id":"https://openalex.org/C2779040068","wikidata":"https://www.wikidata.org/wiki/Q7229807","display_name":"Population genomics","level":5,"score":0.32519999146461487},{"id":"https://openalex.org/C9287583","wikidata":"https://www.wikidata.org/wiki/Q5532883","display_name":"Genetic architecture","level":4,"score":0.322299987077713},{"id":"https://openalex.org/C58677359","wikidata":"https://www.wikidata.org/wiki/Q7201511","display_name":"Plant evolution","level":4,"score":0.3188999891281128},{"id":"https://openalex.org/C151020129","wikidata":"https://www.wikidata.org/wiki/Q7625067","display_name":"Structural variation","level":4,"score":0.31119999289512634},{"id":"https://openalex.org/C171578705","wikidata":"https://www.wikidata.org/wiki/Q5418700","display_name":"Evolutionary dynamics","level":3,"score":0.3084999918937683},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.30820000171661377},{"id":"https://openalex.org/C69991583","wikidata":"https://www.wikidata.org/wiki/Q1423575","display_name":"Candidate gene","level":3,"score":0.3075999915599823},{"id":"https://openalex.org/C81977670","wikidata":"https://www.wikidata.org/wiki/Q585259","display_name":"Genetic diversity","level":3,"score":0.29660001397132874},{"id":"https://openalex.org/C2776838516","wikidata":"https://www.wikidata.org/wiki/Q187787","display_name":"Genetic algorithm","level":2,"score":0.29179999232292175},{"id":"https://openalex.org/C55548728","wikidata":"https://www.wikidata.org/wiki/Q1465102","display_name":"Gene dosage","level":4,"score":0.28519999980926514},{"id":"https://openalex.org/C186413461","wikidata":"https://www.wikidata.org/wiki/Q744727","display_name":"Genetic association","level":5,"score":0.28459998965263367},{"id":"https://openalex.org/C137848329","wikidata":"https://www.wikidata.org/wiki/Q804635","display_name":"Balancing selection","level":4,"score":0.2815999984741211},{"id":"https://openalex.org/C7602840","wikidata":"https://www.wikidata.org/wiki/Q746284","display_name":"Gene duplication","level":3,"score":0.27489998936653137},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.2711000144481659},{"id":"https://openalex.org/C26589402","wikidata":"https://www.wikidata.org/wiki/Q7068267","display_name":"Nucleotide diversity","level":5,"score":0.26460000872612},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.260699987411499},{"id":"https://openalex.org/C134443026","wikidata":"https://www.wikidata.org/wiki/Q4809584","display_name":"Association mapping","level":5,"score":0.25209999084472656},{"id":"https://openalex.org/C167683757","wikidata":"https://www.wikidata.org/wiki/Q5937774","display_name":"Human evolutionary genetics","level":4,"score":0.2513999938964844}],"mesh":[{"descriptor_ui":"D000222","descriptor_name":"Adaptation, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D005810","descriptor_name":"Multigene Family","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013312","descriptor_name":"Stress, Physiological","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000502","qualifier_name":"physiology","is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020440","descriptor_name":"Gene Duplication","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056915","descriptor_name":"DNA Copy Number Variations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1093/g3journal/jkag183","doi":"https://doi.org/10.1093/g3journal/jkag183","is_oa":true,"landing_page_url":"https://doi.org/10.1093/g3journal/jkag183","pdf_url":null,"source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3: Genes, Genomes, Genetics","raw_type":"journal-article"},{"id":"doi:10.1101/2025.08.15.670553","doi":"https://doi.org/10.1101/2025.08.15.670553","is_oa":true,"landing_page_url":"https://doi.org/10.1101/2025.08.15.670553","pdf_url":"https://www.biorxiv.org/content/biorxiv/early/2025/08/21/2025.08.15.670553.full.pdf","source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nd","license_id":"https://openalex.org/licenses/cc-by-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmid:42400356","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42400356","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 (Bethesda, Md.)","raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:13732473","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13732473/","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3 (Bethesda)","raw_type":"Text"},{"id":"pmh:oai:archive.ugent.be:01K7717SQ02DSYKXR77DG9CBMB","doi":null,"is_oa":true,"landing_page_url":"https://biblio.ugent.be/publication/01K7717SQ02DSYKXR77DG9CBMB","pdf_url":"https://biblio.ugent.be/publication/01K7717SQ02DSYKXR77DG9CBMB/file/01K7719JP2Q41R14WCT9640HHH.pdf","source":{"id":"https://openalex.org/S4306400478","display_name":"Ghent University Academic Bibliography (Ghent University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I32597200","host_organization_name":"Ghent University","host_organization_lineage":["https://openalex.org/I32597200"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1093/g3journal/jkag183","doi":"https://doi.org/10.1093/g3journal/jkag183","is_oa":true,"landing_page_url":"https://doi.org/10.1093/g3journal/jkag183","pdf_url":null,"source":{"id":"https://openalex.org/S109822313","display_name":"G3 Genes Genomes Genetics","issn_l":"2160-1836","issn":["2160-1836"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","dongbi-c","jufo-2","ki-jl-2","medline","norway-2","oarl","poland-70","russia-white-list-2","vabb-shw"],"host_organization":"https://openalex.org/P4310319844","host_organization_name":"Genetics Society of America","host_organization_lineage":["https://openalex.org/P4310319844"],"host_organization_lineage_names":["Genetics Society of America"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"G3: Genes, Genomes, Genetics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[{"id":"https://openalex.org/G3585061622","display_name":"TRR 341: \u00d6kologische Genetik der Pflanzen","funder_award_id":"456082119","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7167344508.pdf","grobid_xml":"https://content.openalex.org/works/W7167344508.grobid-xml"},"referenced_works_count":104,"referenced_works":["https://openalex.org/W156481159","https://openalex.org/W1482190741","https://openalex.org/W1577451703","https://openalex.org/W1767772592","https://openalex.org/W1796126005","https://openalex.org/W1900937478","https://openalex.org/W1914610732","https://openalex.org/W1966384070","https://openalex.org/W1971231926","https://openalex.org/W1974122526","https://openalex.org/W1976215839","https://openalex.org/W1981195576","https://openalex.org/W1984212742","https://openalex.org/W1991063198","https://openalex.org/W2019591778","https://openalex.org/W2032794174","https://openalex.org/W2035628732","https://openalex.org/W2037096907","https://openalex.org/W2038464976","https://openalex.org/W2039071784","https://openalex.org/W2039959586","https://openalex.org/W2041999282","https://openalex.org/W2045227735","https://openalex.org/W2046256455","https://openalex.org/W2055501640","https://openalex.org/W2063007653","https://openalex.org/W2064322162","https://openalex.org/W2065150051","https://openalex.org/W2066445331","https://openalex.org/W2075436975","https://openalex.org/W2081840182","https://openalex.org/W2083870688","https://openalex.org/W2097460046","https://openalex.org/W2100684388","https://openalex.org/W2101021876","https://openalex.org/W2102941013","https://openalex.org/W2103581172","https://openalex.org/W2110001178","https://openalex.org/W2110507826","https://openalex.org/W2110634869","https://openalex.org/W2116713491","https://openalex.org/W2118630694","https://openalex.org/W2124397449","https://openalex.org/W2128296317","https://openalex.org/W2130308636","https://openalex.org/W2131616418","https://openalex.org/W2135123683","https://openalex.org/W2136342652","https://openalex.org/W2136434181","https://openalex.org/W2137455182","https://openalex.org/W2141292707","https://openalex.org/W2142466527","https://openalex.org/W2142678478","https://openalex.org/W2142741172","https://openalex.org/W2148592495","https://openalex.org/W2150148265","https://openalex.org/W2152075687","https://openalex.org/W2154453780","https://openalex.org/W2155496026","https://openalex.org/W2155707112","https://openalex.org/W2176111319","https://openalex.org/W2180663954","https://openalex.org/W2192281309","https://openalex.org/W2226299262","https://openalex.org/W2259944514","https://openalex.org/W2340241723","https://openalex.org/W2341861303","https://openalex.org/W2405752231","https://openalex.org/W2419574648","https://openalex.org/W2463201722","https://openalex.org/W2474525766","https://openalex.org/W2498192911","https://openalex.org/W2522577827","https://openalex.org/W2750260160","https://openalex.org/W2756466202","https://openalex.org/W2800979113","https://openalex.org/W2883251903","https://openalex.org/W2939612462","https://openalex.org/W2942711151","https://openalex.org/W2952902252","https://openalex.org/W2958560489","https://openalex.org/W2970263563","https://openalex.org/W2988396470","https://openalex.org/W3014574598","https://openalex.org/W3015850611","https://openalex.org/W3033036270","https://openalex.org/W3044654061","https://openalex.org/W3104895181","https://openalex.org/W3107613164","https://openalex.org/W3110945344","https://openalex.org/W3113087152","https://openalex.org/W3166420679","https://openalex.org/W4233120011","https://openalex.org/W4309506674","https://openalex.org/W4376878560","https://openalex.org/W4386280178","https://openalex.org/W4386369120","https://openalex.org/W4387410180","https://openalex.org/W4394718494","https://openalex.org/W4405612112","https://openalex.org/W4408099242","https://openalex.org/W4409376239","https://openalex.org/W4412650288","https://openalex.org/W4412997130"],"related_works":["https://openalex.org/W2144274181","https://openalex.org/W4412997130","https://openalex.org/W4408099242","https://openalex.org/W3014574598","https://openalex.org/W6920597539","https://openalex.org/W2905096544","https://openalex.org/W4412661493","https://openalex.org/W2914258766","https://openalex.org/W4407730720","https://openalex.org/W4414737728"],"abstract_inverted_index":{"Abstract":[0],"Copy":[1,91,122],"number":[2,34,77,92,123,146,181,196,218],"variation":[3,35,78,93,124,147,219],"is":[4],"a":[5,59,152,221],"major":[6],"source":[7],"of":[8,81,111,174,203,224],"genomic":[9,211],"diversity":[10,173],"that":[11,194],"shapes":[12],"gene":[13,51,67,98,204],"family":[14,205],"evolution":[15,226],"and":[16,46,84,100,120,133,188,207,213,227],"may":[17],"contribute":[18],"to":[19,49,167],"ecological":[20,25,228],"differentiation,":[21],"yet":[22],"its":[23],"genome-wide":[24],"relevance":[26],"remains":[27],"poorly":[28],"understood.":[29],"Here,":[30],"we":[31,62],"analyzed":[32],"copy":[33,76,145,180,195,217],"across":[36,97],"four":[37],"Brassicaceae":[38],"species":[39],"(Arabidopsis":[40],"thaliana,":[41],"A.":[42,44,82,85,106,115,149,160],"lyrata,":[43,161],"halleri,":[45],"Arabis":[47],"alpina)":[48],"identify":[50],"families":[52,68,99],"undergoing":[53],"rapid":[54],"expansion":[55],"or":[56],"contraction.":[57],"Using":[58],"birth\u2013death":[60],"model,":[61],"identified":[63],"231":[64],"rapidly":[65,175],"evolving":[66,176],"spanning":[69],"diverse":[70],"functional":[71,172],"categories.":[72],"We":[73],"then":[74],"characterized":[75],"within":[79],"populations":[80],"thaliana":[83,107,150],"lyrata":[86,116],"using":[87],"population-scale":[88],"long-read":[89],"assemblies.":[90],"exhibited":[94,117],"strong":[95],"heterogeneity":[96],"species,":[101],"with":[102,156],"contrasting":[103],"evolutionary":[104],"outcomes:":[105],"showed":[108,151],"greater":[109],"retention":[110],"duplicated":[112],"copies,":[113],"whereas":[114,158],"higher":[118],"pseudogenization":[119],"turnover.":[121],"profiles":[125],"were":[126,163,183],"strongly":[127,165],"structured":[128],"geographically,":[129],"reflecting":[130],"known":[131],"demographic":[132],"phylogeographic":[134],"patterns":[135],"in":[136,148,159,186],"both":[137],"species.":[138],"Environmental":[139],"association":[140,155],"analyses":[141],"revealed":[142],"species-specific":[143],"architectures:":[144],"diffuse,":[153],"polygenic":[154],"climate,":[157],"associations":[162],"more":[164],"coupled":[166],"population":[168],"structure.":[169],"Despite":[170],"the":[171,201],"families,":[177],"environmentally":[178],"associated":[179],"variations":[182],"significantly":[184],"enriched":[185],"defense-":[187],"stress-related":[189],"functions.":[190],"These":[191],"results":[192],"demonstrate":[193],"variation\u2013environment":[197],"relationships":[198],"emerge":[199],"at":[200],"level":[202],"networks":[206],"are":[208],"shaped":[209],"by":[210],"architecture":[212],"lineage":[214],"history,":[215],"highlighting":[216],"as":[220],"context-dependent":[222],"driver":[223],"genome":[225],"differentiation.":[229]},"counts_by_year":[{"year":2026,"cited_by_count":3}],"updated_date":"2026-11-11T12:16:26.678958","created_date":"2026-07-05T00:00:00"}
