{"id":"https://openalex.org/W7164933360","doi":"https://doi.org/10.1186/s12859-026-06714-7","title":"ENflorA: a flexible tool for the bulk submission of next generation sequencing data to the European Nucleotide Archive","display_name":"ENflorA: a flexible tool for the bulk submission of next generation sequencing data to the European Nucleotide Archive","publication_year":2026,"publication_date":"2026-10-21","ids":{"openalex":"https://openalex.org/W7164933360","doi":"https://doi.org/10.1186/s12859-026-06714-7","pmid":"https://pubmed.ncbi.nlm.nih.gov/42907977","pmcid":"https://www.ncbi.nlm.nih.gov/pmc/articles/13689177"},"language":"en","primary_location":{"id":"doi:10.1186/s12859-026-06714-7","doi":"https://doi.org/10.1186/s12859-026-06714-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06714-7","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-026-06714-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","ccf-c","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-2","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://link.springer.com/content/pdf/10.1186/s12859-026-06714-7.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5138702373","display_name":"Antonio Alfaro de Prado Mart\u00edn","orcid":"https://orcid.org/0009-0001-7265-6565","observed_orcids":["https://orcid.org/0009-0001-7265-6565"]},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Antonio Alfaro de Prado Mart\u00edn","raw_affiliation_strings":["Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Altensteinstra\u00dfe 6, 14195, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Altensteinstra\u00dfe 6, 14195, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136547239","display_name":"Francisco Fajardo-Guti\u00e9rrez","orcid":"https://orcid.org/0000-0002-2235-3910","observed_orcids":["https://orcid.org/0000-0002-2235-3910"]},"institutions":[{"id":"https://openalex.org/I4210086012","display_name":"Botanic Garden and Botanical Museum Berlin","ror":"https://ror.org/00bv4cx53","country_code":"DE","type":"archive","lineage":["https://openalex.org/I4210086012","https://openalex.org/I75951250"]},{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Francisco Fajardo-Guti\u00e9rrez","raw_affiliation_strings":["Botanischer Garten und Botanisches Museum Berlin, Freie Universit\u00e4t Berlin, K\u00f6nigin Luise-Stra\u00dfe 6-8, 14195, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Botanischer Garten und Botanisches Museum Berlin, Freie Universit\u00e4t Berlin, K\u00f6nigin Luise-Stra\u00dfe 6-8, 14195, Berlin, Germany","institution_ids":["https://openalex.org/I4210086012","https://openalex.org/I75951250"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061582554","display_name":"Astrid de Mestier","orcid":"https://orcid.org/0000-0002-9976-8196","observed_orcids":["https://orcid.org/0000-0002-9976-8196"]},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Astrid de Mestier","raw_affiliation_strings":["Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Altensteinstra\u00dfe 6, 14195, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Altensteinstra\u00dfe 6, 14195, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089796158","display_name":"Katja Reichel","orcid":"https://orcid.org/0000-0001-9052-3179","observed_orcids":["https://orcid.org/0000-0001-9052-3179"]},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Katja Reichel","raw_affiliation_strings":["Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Altensteinstra\u00dfe 6, 14195, Berlin, Germany. katja.reichel@fu-berlin.de"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Biologie, Systematische Botanik und Pflanzengeographie, Freie Universit\u00e4t Berlin, Altensteinstra\u00dfe 6, 14195, Berlin, Germany. katja.reichel@fu-berlin.de","institution_ids":["https://openalex.org/I75951250"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089796158"],"corresponding_institution_ids":["https://openalex.org/I75951250"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.31062024,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"27","issue":"1","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5903000235557556,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.5903000235557556,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.3073999881744385,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.09589999914169312,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/european-nucleotide-archive","display_name":"European Nucleotide Archive","score":0.9700000286102295},{"id":"https://openalex.org/keywords/next-generation-sequencing-data","display_name":"next-generation sequencing data","score":0.6790000200271606},{"id":"https://openalex.org/keywords/metadata-curation","display_name":"metadata curation","score":0.8799999952316284},{"id":"https://openalex.org/keywords/fair-principles","display_name":"FAIR principles","score":0.6370000243186951}],"concepts":[{"id":"https://openalex.org/C71901391","wikidata":"https://www.wikidata.org/wiki/Q7126699","display_name":"Upload","level":2,"score":0.8603000044822693},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8210999965667725},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7318000197410583},{"id":"https://openalex.org/C20136886","wikidata":"https://www.wikidata.org/wiki/Q749647","display_name":"Interoperability","level":2,"score":0.6464999914169312},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.534500002861023},{"id":"https://openalex.org/C61423126","wikidata":"https://www.wikidata.org/wiki/Q187432","display_name":"Scripting language","level":2,"score":0.5078999996185303},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4819999933242798},{"id":"https://openalex.org/C91632574","wikidata":"https://www.wikidata.org/wiki/Q15088675","display_name":"Data curation","level":2,"score":0.4410000145435333},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4302000105381012},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.41429999470710754},{"id":"https://openalex.org/C2780154274","wikidata":"https://www.wikidata.org/wiki/Q7126717","display_name":"Download","level":2,"score":0.37709999084472656},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.3434000015258789},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3190000057220459},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.3179999887943268},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.30300000309944153},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2915000021457672},{"id":"https://openalex.org/C45874996","wikidata":"https://www.wikidata.org/wiki/Q37045","display_name":"Markup language","level":3,"score":0.2863999903202057},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.2646999955177307},{"id":"https://openalex.org/C93996380","wikidata":"https://www.wikidata.org/wiki/Q44127","display_name":"Server","level":2,"score":0.2632000148296356},{"id":"https://openalex.org/C97250363","wikidata":"https://www.wikidata.org/wiki/Q235557","display_name":"File format","level":2,"score":0.259799987077713},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.2535000145435333}],"mesh":[{"descriptor_ui":"D000071253","descriptor_name":"Metadata","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":9,"locations":[{"id":"doi:10.1186/s12859-026-06714-7","doi":"https://doi.org/10.1186/s12859-026-06714-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06714-7","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-026-06714-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","ccf-c","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-2","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"doi:10.20944/preprints202606.0798.v1","doi":"https://doi.org/10.20944/preprints202606.0798.v1","is_oa":true,"landing_page_url":"https://doi.org/10.20944/preprints202606.0798.v1","pdf_url":null,"source":{"id":"https://openalex.org/S6309402219","display_name":"Preprints.org","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":["https://openalex.org/P4310310987"],"host_organization_lineage_names":["Multidisciplinary Digital Publishing Institute"],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"posted-content"},{"id":"pmh:oai:pubmedcentral.nih.gov:13689177","doi":null,"is_oa":true,"landing_page_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13689177/","pdf_url":"https://pmc.ncbi.nlm.nih.gov/articles/PMC13689177/pdf/12859_2026_Article_6714.pdf","source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmid:42907977","doi":null,"is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42907977","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:doaj.org/article:3bed2e6541014aa49c89d7adc15ddb49","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/3bed2e6541014aa49c89d7adc15ddb49","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 27, Iss 1 (2026)","raw_type":"article"},{"id":"pmh:oai:refubium.fu-berlin.de:fub188/54598","doi":null,"is_oa":true,"landing_page_url":"https://refubium.fu-berlin.de/handle/fub188/54598","pdf_url":null,"source":{"id":"https://openalex.org/S4306402444","display_name":"Refubium (Universit\u00e4tsbibliothek der Freien Universit\u00e4t Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I75951250","host_organization_name":"Freie Universit\u00e4t Berlin","host_organization_lineage":["https://openalex.org/I75951250"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"doc-type:article"},{"id":"doi:10.17169/refubium-54341","doi":"https://doi.org/10.17169/refubium-54341","is_oa":true,"landing_page_url":"https://doi.org/10.17169/refubium-54341","pdf_url":null,"source":{"id":"https://openalex.org/S7407052913","display_name":"Universit\u00e4tsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article-journal"},{"id":"doi:10.6084/m9.figshare.c.8789243","doi":"https://doi.org/10.6084/m9.figshare.c.8789243","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.8789243","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Collection"},{"id":"doi:10.6084/m9.figshare.c.8789243.v1","doi":"https://doi.org/10.6084/m9.figshare.c.8789243.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.c.8789243.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Collection"}],"best_oa_location":{"id":"doi:10.1186/s12859-026-06714-7","doi":"https://doi.org/10.1186/s12859-026-06714-7","is_oa":true,"landing_page_url":"https://doi.org/10.1186/s12859-026-06714-7","pdf_url":"https://link.springer.com/content/pdf/10.1186/s12859-026-06714-7.pdf","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["anvur-class-a","anvur-scientific","ccf-c","cwts-core","doaj","dongbi-c","doyens","jufo-1","ki-jl-1","medline","norway-2","oarl","poland-100","russia-white-list-1","vabb-shw"],"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320324521","display_name":"Freie Universit\u00e4t Berlin","ror":null},{"id":"https://openalex.org/F4320327764","display_name":"Leibniz-Institut f\u00fcr Zoo- und Wildtierforschung","ror":"https://ror.org/05nywn832"},{"id":"https://openalex.org/F4320334763","display_name":"Leibniz-Gemeinschaft","ror":"https://ror.org/01n6r0e97"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7164933360.pdf","grobid_xml":"https://content.openalex.org/works/W7164933360.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W2114850508","https://openalex.org/W2131271436","https://openalex.org/W2302501749","https://openalex.org/W2342249984","https://openalex.org/W3006653136","https://openalex.org/W3044926932","https://openalex.org/W3169268216","https://openalex.org/W3173707026","https://openalex.org/W4205493727","https://openalex.org/W4207054657","https://openalex.org/W4308713577","https://openalex.org/W4310957810","https://openalex.org/W4400492967","https://openalex.org/W4404434589","https://openalex.org/W4404511392","https://openalex.org/W4405009602","https://openalex.org/W4410595654","https://openalex.org/W4412841979","https://openalex.org/W4413222598","https://openalex.org/W4413992903","https://openalex.org/W4414305824","https://openalex.org/W4416625111","https://openalex.org/W4416793256","https://openalex.org/W4416955346","https://openalex.org/W7122713728"],"related_works":["https://openalex.org/W7223248354","https://openalex.org/W6948636526","https://openalex.org/W4361280319","https://openalex.org/W3013532204","https://openalex.org/W4309305890","https://openalex.org/W2159793238","https://openalex.org/W7122713728","https://openalex.org/W2895569822","https://openalex.org/W2952849530","https://openalex.org/W4416955346"],"abstract_inverted_index":{"BACKGROUND:":[0],"With":[1],"the":[2,15,44,50,73,165],"advancement":[3],"of":[4,10,17,75,88,123],"sequencing":[5,174],"technologies":[6],"and":[7,12,63,71,77,95,107,128,140,157,179],"increasing":[8],"quality":[9],"assembly":[11,97],"annotation":[13],"tools,":[14],"amount":[16],"biological":[18],"sequence":[19,93],"data":[20,29,53,98,124,175],"produced":[21],"by":[22,90],"research":[23],"grows":[24],"rapidly.":[25],"To":[26],"keep":[27],"this":[28],"accessible":[30],"for":[31,60,120,154],"potential":[32],"re-analysis,":[33],"it":[34],"is":[35,118,137],"typically":[36],"stored":[37],"in":[38,52,57,104,133],"public":[39,80],"online":[40],"databases,":[41],"such":[42],"as":[43],"European":[45],"Nucleotide":[46],"Archive":[47],"(ENA).":[48],"However,":[49],"increase":[51,56],"entails":[54],"an":[55,150],"time":[58],"needed":[59],"metadata":[61,78,114],"curation":[62],"upload.":[64],"We":[65,83],"propose":[66],"a":[67,86,105,158],"tool":[68],"to":[69,79,102,171],"simplify":[70],"automatize":[72],"upload":[74,122,152,160],"experimental":[76],"repositories.":[81],"RESULTS:":[82],"developed":[84],"ENflorA,":[85],"set":[87],"scripts":[89],"which":[91],"sample,":[92],"read":[94],"(annotated)":[96],"can":[99,129,141],"be":[100,130,142],"uploaded":[101],"ENA":[103,166],"simple":[106],"standardized":[108],"manner.":[109],"Our":[110],"software":[111],"allows":[112],"easy":[113],"entry":[115],"via":[116],"spreadsheets,":[117],"suitable":[119],"batch":[121],"from":[125],"different":[126],"sources,":[127],"fully":[131],"integrated":[132],"bioinformatic":[134],"workflows.":[135],"It":[136],"platform":[138],"independent":[139],"run":[143],"natively":[144],"on":[145],"High":[146],"Performance":[147],"Computers,":[148],"integrates":[149],"lftp":[151],"option":[153],"big":[155],"files":[156],"test":[159],"option.":[161],"CONCLUSIONS:":[162],"By":[163],"easing":[164],"submission":[167],"process,":[168],"ENflorA":[169],"contributes":[170],"making":[172],"high-throughput":[173],"findable,":[176],"accessible,":[177],"interoperable":[178],"reusable.":[180]},"counts_by_year":[],"updated_date":"2026-11-04T10:54:05.112534","created_date":"2026-06-17T00:00:00"}