{"id":"https://openalex.org/W7152123485","doi":"https://doi.org/10.5281/zenodo.19474194","title":"Supporting Files for \"ntRoot: Genetic ancestry inference across diverse genomic data types\"","display_name":"Supporting Files for \"ntRoot: Genetic ancestry inference across diverse genomic data types\"","publication_year":2026,"publication_date":"2026-04-08","ids":{"openalex":"https://openalex.org/W7152123485","doi":"https://doi.org/10.5281/zenodo.19474194"},"language":"en","primary_location":{"id":"doi:10.5281/zenodo.19474194","doi":"https://doi.org/10.5281/zenodo.19474194","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19474194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"volume":null,"type":"dataset","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.5281/zenodo.19474194","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5036530894","display_name":"Lauren Coombe","orcid":"https://orcid.org/0000-0002-7518-2326","observed_orcids":["https://orcid.org/0000-0002-7518-2326"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Coombe, Lauren","raw_affiliation_strings":["BC Cancer Research Institute"],"raw_orcid":"https://orcid.org/0000-0002-7518-2326","affiliations":[{"raw_affiliation_string":"BC Cancer Research Institute","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012272482","display_name":"Taghrid Aloraini","orcid":"https://orcid.org/0000-0001-5930-7072","observed_orcids":["https://orcid.org/0000-0001-5930-7072"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Aloraini, Taghrid","raw_affiliation_strings":["BC Cancer Research Institute"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BC Cancer Research Institute","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017539699","display_name":"\u0130nan\u00e7 Birol","orcid":"https://orcid.org/0000-0003-0950-7839","observed_orcids":["https://orcid.org/0000-0003-0950-7839"]},"institutions":[{"id":"https://openalex.org/I141945490","display_name":"University of British Columbia","ror":"https://ror.org/03rmrcq20","country_code":"CA","type":"education","lineage":["https://openalex.org/I141945490"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Birol, Inanc","raw_affiliation_strings":["BC Cancer Research Institute","University of British Columbia, Department of Medical Genetics"],"raw_orcid":"https://orcid.org/0000-0003-0950-7839","affiliations":[{"raw_affiliation_string":"BC Cancer Research Institute","institution_ids":[]},{"raw_affiliation_string":"University of British Columbia, Department of Medical Genetics","institution_ids":["https://openalex.org/I141945490"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5102829017","display_name":"Ren\u00e9 L. Warren","orcid":"https://orcid.org/0000-0002-9890-2293","observed_orcids":["https://orcid.org/0000-0002-9890-2293"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Warren, Rene L.","raw_affiliation_strings":["BC Cancer Research Institute"],"raw_orcid":"https://orcid.org/0000-0002-9890-2293","affiliations":[{"raw_affiliation_string":"BC Cancer Research Institute","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.8525000214576721,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.8525000214576721,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.052000001072883606,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.05000000074505806,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genetic-ancestry-inference","display_name":"genetic ancestry inference","score":0.9350000023841858},{"id":"https://openalex.org/keywords/whole-genome-sequencing","display_name":"whole genome sequencing","score":0.7329999804496765},{"id":"https://openalex.org/keywords/1000-genomes-project","display_name":"1000 Genomes Project","score":0.8730000257492065},{"id":"https://openalex.org/keywords/variant-calling","display_name":"variant calling","score":0.8349999785423279},{"id":"https://openalex.org/keywords/haplotype-calling","display_name":"haplotype calling","score":0.753000020980835},{"id":"https://openalex.org/keywords/conda-environment","display_name":"conda environment","score":0.6909999847412109},{"id":"https://openalex.org/keywords/bioinformatics-pipeline","display_name":"bioinformatics pipeline","score":0.5270000100135803}],"concepts":[{"id":"https://openalex.org/C75069973","wikidata":"https://www.wikidata.org/wiki/Q913584","display_name":"Genetic genealogy","level":3,"score":0.8579000234603882},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6955000162124634},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5789999961853027},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5019999742507935},{"id":"https://openalex.org/C97425143","wikidata":"https://www.wikidata.org/wiki/Q164786","display_name":"1000 Genomes Project","level":5,"score":0.49149999022483826},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4763999879360199},{"id":"https://openalex.org/C2993807623","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genetic data","level":3,"score":0.4542999863624573},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.45350000262260437},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.43939998745918274},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.43720000982284546},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41179999709129333},{"id":"https://openalex.org/C24432333","wikidata":"https://www.wikidata.org/wiki/Q2068526","display_name":"Whole genome sequencing","level":4,"score":0.4032000005245209},{"id":"https://openalex.org/C137132547","wikidata":"https://www.wikidata.org/wiki/Q4752570","display_name":"Ancestry-informative marker","level":5,"score":0.3831999897956848},{"id":"https://openalex.org/C198531522","wikidata":"https://www.wikidata.org/wiki/Q485146","display_name":"Sample (material)","level":2,"score":0.38089999556541443},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.3605000078678131},{"id":"https://openalex.org/C2780385302","wikidata":"https://www.wikidata.org/wiki/Q367158","display_name":"Protocol (science)","level":3,"score":0.3594000041484833},{"id":"https://openalex.org/C40583040","wikidata":"https://www.wikidata.org/wiki/Q1502105","display_name":"Human genetic variation","level":5,"score":0.34209999442100525},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3125},{"id":"https://openalex.org/C2994067223","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"Genomic sequencing","level":4,"score":0.3034000098705292},{"id":"https://openalex.org/C106208931","wikidata":"https://www.wikidata.org/wiki/Q1098876","display_name":"Genome-wide association study","level":5,"score":0.28999999165534973},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2872999906539917},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.27639999985694885},{"id":"https://openalex.org/C2993967602","wikidata":"https://www.wikidata.org/wiki/Q5532932","display_name":"Genetic variants","level":4,"score":0.2653999924659729},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.26339998841285706},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.2621999979019165},{"id":"https://openalex.org/C2910560014","wikidata":"https://www.wikidata.org/wiki/Q912147","display_name":"Genome Scan","level":5,"score":0.2515999972820282}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.5281/zenodo.19474194","doi":"https://doi.org/10.5281/zenodo.19474194","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19474194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.19474195","doi":"https://doi.org/10.5281/zenodo.19474195","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19474195","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},{"id":"doi:10.5281/zenodo.22235499","doi":"https://doi.org/10.5281/zenodo.22235499","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.22235499","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"}],"best_oa_location":{"id":"doi:10.5281/zenodo.19474194","doi":"https://doi.org/10.5281/zenodo.19474194","is_oa":true,"landing_page_url":"https://doi.org/10.5281/zenodo.19474194","pdf_url":null,"source":{"id":"https://openalex.org/S4306400562","display_name":"Zenodo (CERN European Organization for Nuclear Research)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I67311998","host_organization_name":"European Organization for Nuclear Research","host_organization_lineage":["https://openalex.org/I67311998"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Dataset"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W6930081479","https://openalex.org/W6912983063","https://openalex.org/W6893205041","https://openalex.org/W2578231345","https://openalex.org/W6939869682","https://openalex.org/W7099559076","https://openalex.org/W4399317436","https://openalex.org/W7020671658","https://openalex.org/W4393668762","https://openalex.org/W6887782518"],"abstract_inverted_index":{"Supporting":[0],"files":[1],"for":[2,31],"the":[3,27,32,36,41,61,67,76],"protocol":[4],"\"ntRoot:":[5],"Genetic":[6],"ancestry":[7],"inference":[8],"across":[9],"diverse":[10],"genomic":[11],"data":[12],"types\".":[13],"The":[14,56,69],"VCF":[15],"file":[16,59,70],"provided":[17,57],"here":[18],"was":[19,51],"generating":[20],"using":[21,45,53],"paired-end":[22],"WGS":[23],"sequencing":[24],"reads":[25,37],"from":[26],"1000":[28],"Genomes":[29],"Project":[30],"sample":[33],"HG00864.":[34],"First,":[35],"were":[38],"aligned":[39],"to":[40,74],"human":[42],"reference":[43],"genome":[44],"bwa":[46],"mem.":[47],"Then,":[48],"variant":[49],"calling":[50],"performed":[52],"GATK":[54],"HaplotypeCaller.":[55],"yaml":[58],"contains":[60],"version-pinned":[62],"dependencies":[63],"used":[64,73],"in":[65,78],"preparing":[66],"protocol.":[68],"can":[71],"be":[72],"install":[75,83],"tools":[77],"a":[79],"conda":[80],"environment":[81],"(conda":[82],"--file":[84],"ntroot_protocol.conda-environment.yaml).":[85]},"counts_by_year":[],"updated_date":"2026-10-28T10:33:24.094632","created_date":"2026-04-09T00:00:00"}
