{"id":"https://openalex.org/W7138461237","doi":"https://doi.org/10.6084/m9.figshare.4318499","title":"Additional file 8: of Understanding pneumococcal serotype 1 biology through population genomic analysis","display_name":"Additional file 8: of Understanding pneumococcal serotype 1 biology through population genomic analysis","publication_year":2016,"publication_date":"2016-01-01","ids":{"openalex":"https://openalex.org/W7138461237","doi":"https://doi.org/10.6084/m9.figshare.4318499"},"language":null,"primary_location":{"id":"doi:10.6084/m9.figshare.4318499","doi":"https://doi.org/10.6084/m9.figshare.4318499","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.4318499","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"volume":null,"type":"article","indexed_in":["datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://doi.org/10.6084/m9.figshare.4318499","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033568169","display_name":"Chrispin Chaguza","orcid":"https://orcid.org/0000-0002-2108-1757","observed_orcids":["https://orcid.org/0000-0002-2108-1757"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Chaguza, Chrispin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068894481","display_name":"Jennifer Cornick","orcid":"https://orcid.org/0000-0001-6841-9842","observed_orcids":["https://orcid.org/0000-0001-6841-9842"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Cornick, Jennifer","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049639550","display_name":"Simon R. Harris","orcid":"https://orcid.org/0000-0003-1512-6194","observed_orcids":["https://orcid.org/0000-0003-1512-6194"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Harris, Simon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041001443","display_name":"Cheryl P. Andam","orcid":"https://orcid.org/0000-0003-4428-0924","observed_orcids":["https://orcid.org/0000-0003-4428-0924"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Andam, Cheryl","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129664564","display_name":"Laura Bricio-Moreno","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bricio-Moreno, Laura","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016196835","display_name":"Marie Yang","orcid":"https://orcid.org/0000-0003-3104-2150","observed_orcids":["https://orcid.org/0000-0003-3104-2150"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yang, Marie","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014579139","display_name":"Feyruz Yal\u00e7in","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Yalcin, Feyruz","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067220562","display_name":"Sani Ousmane","orcid":"https://orcid.org/0000-0003-2886-0857","observed_orcids":["https://orcid.org/0000-0003-2886-0857"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ousmane, Sani","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016984700","display_name":"Shanil Govindpersad","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Govindpersad, Shanil","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061668126","display_name":"Madikay Senghore","orcid":"https://orcid.org/0000-0002-4303-6236","observed_orcids":["https://orcid.org/0000-0002-4303-6236"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Senghore, Madikay","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026548711","display_name":"Chinelo Ebruke","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ebruke, Chinelo","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061404544","display_name":"Mignon du Plessis","orcid":"https://orcid.org/0000-0001-9186-0679","observed_orcids":["https://orcid.org/0000-0001-9186-0679"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Du Plessis, Mignon","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051578652","display_name":"Anmol M Kiran","orcid":"https://orcid.org/0000-0003-2680-2303","observed_orcids":["https://orcid.org/0000-0003-2680-2303"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kiran, Anmol","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026314935","display_name":"Gerd Pluschke","orcid":"https://orcid.org/0000-0003-1957-2925","observed_orcids":["https://orcid.org/0000-0003-1957-2925"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Pluschke, Gerd","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129726816","display_name":"Betuel Sigauque","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sigauque, Betuel","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031763725","display_name":"Lesley McGee","orcid":"https://orcid.org/0000-0001-8214-921X","observed_orcids":["https://orcid.org/0000-0001-8214-921X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"McGee, Lesley","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129729655","display_name":"Keith Klugman","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klugman, Keith","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129658053","display_name":"Paul Turner","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Turner, Paul","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013196979","display_name":"Jukka Corander","orcid":"https://orcid.org/0000-0002-7752-1942","observed_orcids":["https://orcid.org/0000-0002-7752-1942"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Corander, Jukka","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084268602","display_name":"Julian Parkhill","orcid":"https://orcid.org/0000-0002-7069-5958","observed_orcids":["https://orcid.org/0000-0002-7069-5958"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Parkhill, Julian","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055330560","display_name":"Jean\u2010Marc Collard","orcid":"https://orcid.org/0000-0002-1490-3978","observed_orcids":["https://orcid.org/0000-0002-1490-3978"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Collard, Jean-Marc","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090401686","display_name":"Mart\u00edn Antonio","orcid":"https://orcid.org/0000-0002-4810-1308","observed_orcids":["https://orcid.org/0000-0002-4810-1308"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Antonio, Martin","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058553692","display_name":"Anne von Gottberg","orcid":"https://orcid.org/0000-0002-0243-7455","observed_orcids":["https://orcid.org/0000-0002-0243-7455"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"von Gottberg, Anne","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5034013271","display_name":"Robert S. Heyderman","orcid":"https://orcid.org/0000-0003-4573-449X","observed_orcids":["https://orcid.org/0000-0003-4573-449X"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Heyderman, Robert","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055927583","display_name":"Neil French","orcid":"https://orcid.org/0000-0003-4814-8293","observed_orcids":["https://orcid.org/0000-0003-4814-8293","https://orcid.org/0000-0002-9376-3482"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"French, Neil","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043257927","display_name":"Aras Kadioglu","orcid":"https://orcid.org/0000-0003-1137-6321","observed_orcids":["https://orcid.org/0000-0003-1137-6321"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Kadioglu, Aras","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040018261","display_name":"William Paul Hanage","orcid":"https://orcid.org/0000-0002-6319-7336","observed_orcids":["https://orcid.org/0000-0002-6319-7336"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Hanage, William","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5129666283","display_name":"Dean Everett","orcid":"https://orcid.org/0000-0003-2253-6036","observed_orcids":["https://orcid.org/0000-0003-2253-6036"]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Everett, Dean","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5129712638","display_name":"Stephen Bentley","orcid":null,"observed_orcids":[]},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bentley, Stephen","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.62890495,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9423999786376953,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10654","display_name":"Pneumonia and Respiratory Infections","score":0.9423999786376953,"subfield":{"id":"https://openalex.org/subfields/2713","display_name":"Epidemiology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11688","display_name":"Microbial infections and disease research","score":0.0215000007301569,"subfield":{"id":"https://openalex.org/subfields/2404","display_name":"Microbiology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.004800000227987766,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/streptococcus-pneumoniae","display_name":"Streptococcus pneumoniae","score":0.8949999809265137},{"id":"https://openalex.org/keywords/genetic-recombination","display_name":"genetic recombination","score":0.8600000143051147},{"id":"https://openalex.org/keywords/population-genomics","display_name":"population genomics","score":0.7739999890327454},{"id":"https://openalex.org/keywords/recombination-region","display_name":"recombination region","score":0.7429999709129333},{"id":"https://openalex.org/keywords/bacterial-genomics","display_name":"bacterial genomics","score":0.41600000858306885}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8223000168800354},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6748999953269958},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.6427000164985657},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5407999753952026},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4821999967098236},{"id":"https://openalex.org/C10389963","wikidata":"https://www.wikidata.org/wiki/Q848328","display_name":"Serotype","level":2,"score":0.4812999963760376},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.47269999980926514},{"id":"https://openalex.org/C23085057","wikidata":"https://www.wikidata.org/wiki/Q5532877","display_name":"Genetic analysis","level":3,"score":0.43549999594688416},{"id":"https://openalex.org/C156695909","wikidata":"https://www.wikidata.org/wiki/Q3373825","display_name":"Recombination","level":3,"score":0.4025000035762787},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.3716999888420105},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30169999599456787},{"id":"https://openalex.org/C2910146623","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"DNA Transposable Elements","level":5,"score":0.298799991607666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.29120001196861267},{"id":"https://openalex.org/C77434933","wikidata":"https://www.wikidata.org/wiki/Q4043440","display_name":"Multilocus sequence typing","level":4,"score":0.28839999437332153},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.28780001401901245},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.26969999074935913},{"id":"https://openalex.org/C90132467","wikidata":"https://www.wikidata.org/wiki/Q171184","display_name":"Phylogenetics","level":3,"score":0.2603999972343445},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.2542000114917755},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.25380000472068787},{"id":"https://openalex.org/C17757408","wikidata":"https://www.wikidata.org/wiki/Q4135516","display_name":"genomic DNA","level":3,"score":0.2526000142097473},{"id":"https://openalex.org/C2781253189","wikidata":"https://www.wikidata.org/wiki/Q221179","display_name":"Streptococcus pneumoniae","level":3,"score":0.2526000142097473},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.2502000033855438}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.6084/m9.figshare.4318499","doi":"https://doi.org/10.6084/m9.figshare.4318499","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.4318499","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"},{"id":"doi:10.6084/m9.figshare.4318499.v1","doi":"https://doi.org/10.6084/m9.figshare.4318499.v1","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.4318499.v1","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.6084/m9.figshare.4318499","doi":"https://doi.org/10.6084/m9.figshare.4318499","is_oa":true,"landing_page_url":"https://doi.org/10.6084/m9.figshare.4318499","pdf_url":null,"source":{"id":"https://openalex.org/S4377196282","display_name":"Figshare","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I4210132348","host_organization_name":"Figshare (United Kingdom)","host_organization_lineage":["https://openalex.org/I4210132348"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"JournalArticle"},"sustainable_development_goals":[],"sustainable_development_goals_aurora":[{"display_name":"Zero hunger","id":"https://metadata.un.org/sdg/2","score":0.7345800995826721}],"study_designs":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":0,"referenced_works":[],"related_works":[],"abstract_inverted_index":{"Summary":[0],"of":[1],"the":[2,6,16],"genes":[3],"found":[4],"in":[5,10,15,21],"genetic":[7],"recombination":[8,19],"regions":[9,17],"clade":[11,23],"SC2-WA.":[12],"Genes":[13],"present":[14],"with":[18],"events":[20],"each":[22],"are":[24],"summarised.":[25],"(DOCX":[26],"124":[27],"kb)":[28]},"counts_by_year":[],"updated_date":"2026-10-14T16:39:01.820549","created_date":"2026-03-18T00:00:00"}