{"id":"https://openalex.org/W7125710607","doi":"https://doi.org/10.52294/001c.165884","title":"Subcortex visualization: A toolbox for custom data visualization in the subcortex and cerebellum","display_name":"Subcortex visualization: A toolbox for custom data visualization in the subcortex and cerebellum","publication_year":2026,"publication_date":"2026-08-13","ids":{"openalex":"https://openalex.org/W7125710607","doi":"https://doi.org/10.52294/001c.165884"},"language":"en","primary_location":{"id":"doi:10.52294/001c.165884","doi":"https://doi.org/10.52294/001c.165884","is_oa":true,"landing_page_url":"https://doi.org/10.52294/001c.165884","pdf_url":"https://apertureneuro.org/article/165884.pdf","source":{"id":"https://openalex.org/S4387281425","display_name":"Aperture Neuro","issn_l":"2957-3963","issn":["2957-3963"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Aperture Neuro","raw_type":"journal-article"},"volume":null,"type":"article","is_traditional":true,"indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://apertureneuro.org/article/165884.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068937224","display_name":"Annie G. Bryant","orcid":"https://orcid.org/0000-0002-2217-6520","observed_orcids":["https://orcid.org/0000-0002-2217-6520"]},"institutions":[{"id":"https://openalex.org/I129604602","display_name":"The University of Sydney","ror":"https://ror.org/0384j8v12","country_code":"AU","type":"education","lineage":["https://openalex.org/I129604602"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Annie Bryant","raw_affiliation_strings":["University of Sydney, Camperdown, Australia"],"raw_orcid":"https://orcid.org/0000-0002-2217-6520","affiliations":[{"raw_affiliation_string":"University of Sydney, Camperdown, Australia","institution_ids":["https://openalex.org/I129604602"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5068937224"],"corresponding_institution_ids":["https://openalex.org/I129604602"],"apc_list":null,"apc_paid":null,"fwci":15.0612,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.99018313,"is_in_top_1_percent":true,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"6","issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.6729000210762024,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.6729000210762024,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11304","display_name":"Advanced Neuroimaging Techniques and Applications","score":0.11240000277757645,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T14411","display_name":"Undergraduate Neuroscience Education and Research","score":0.046300001442432404,"subfield":{"id":"https://openalex.org/subfields/3304","display_name":"Education"},"field":{"id":"https://openalex.org/fields/33","display_name":"Social Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cerebellum","display_name":"cerebellum","score":0.9679999947547913},{"id":"https://openalex.org/keywords/thalamic-nuclei","display_name":"thalamic nuclei","score":0.7910000085830688},{"id":"https://openalex.org/keywords/brainstem","display_name":"brainstem","score":0.9950000047683716},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"brain atlas","score":0.765999972820282},{"id":"https://openalex.org/keywords/neuroimaging-visualization","display_name":"neuroimaging data visualization","score":0.7680000066757202},{"id":"https://openalex.org/keywords/brain-image-segmentation","display_name":"brain segmentation","score":0.828000009059906}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7731000185012817},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7232999801635742},{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.707099974155426},{"id":"https://openalex.org/C2781067378","wikidata":"https://www.wikidata.org/wiki/Q17027399","display_name":"Interpretability","level":2,"score":0.5828999876976013},{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.54339998960495},{"id":"https://openalex.org/C58693492","wikidata":"https://www.wikidata.org/wiki/Q551875","display_name":"Neuroimaging","level":2,"score":0.5044000148773193},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.4390999972820282},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.41780000925064087},{"id":"https://openalex.org/C205427263","wikidata":"https://www.wikidata.org/wiki/Q1931480","display_name":"Neuroinformatics","level":2,"score":0.35899999737739563},{"id":"https://openalex.org/C50231774","wikidata":"https://www.wikidata.org/wiki/Q639842","display_name":"Brain mapping","level":2,"score":0.3580000102519989},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.34850001335144043},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3418000042438507},{"id":"https://openalex.org/C2779652256","wikidata":"https://www.wikidata.org/wiki/Q130983","display_name":"Cerebellum","level":2,"score":0.3269999921321869},{"id":"https://openalex.org/C56666940","wikidata":"https://www.wikidata.org/wiki/Q788790","display_name":"Documentation","level":2,"score":0.29899999499320984},{"id":"https://openalex.org/C103378370","wikidata":"https://www.wikidata.org/wiki/Q948647","display_name":"Neuroanatomy","level":2,"score":0.29580000042915344},{"id":"https://openalex.org/C2988762625","wikidata":"https://www.wikidata.org/wiki/Q492038","display_name":"Brain anatomy","level":3,"score":0.26899999380111694},{"id":"https://openalex.org/C52338299","wikidata":"https://www.wikidata.org/wiki/Q1004354","display_name":"Functional neuroimaging","level":3,"score":0.2540000081062317}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.52294/001c.165884","doi":"https://doi.org/10.52294/001c.165884","is_oa":true,"landing_page_url":"https://doi.org/10.52294/001c.165884","pdf_url":"https://apertureneuro.org/article/165884.pdf","source":{"id":"https://openalex.org/S4387281425","display_name":"Aperture Neuro","issn_l":"2957-3963","issn":["2957-3963"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Aperture Neuro","raw_type":"journal-article"},{"id":"doi:10.64898/2026.01.23.699785","doi":"https://doi.org/10.64898/2026.01.23.699785","is_oa":true,"landing_page_url":"https://doi.org/10.64898/2026.01.23.699785","pdf_url":null,"source":{"id":"https://openalex.org/S4306402567","display_name":"bioRxiv (Cold Spring Harbor Laboratory)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":"https://openalex.org/I2750212522","host_organization_name":"Cold Spring Harbor Laboratory","host_organization_lineage":["https://openalex.org/I2750212522"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"bioRxiv","raw_type":"posted-content"},{"id":"pmh:oai:doaj.org/article:3e7ed97d255f4b43aa83ac8beee4c34f","doi":null,"is_oa":false,"landing_page_url":"https://doaj.org/article/3e7ed97d255f4b43aa83ac8beee4c34f","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"listed_in":[],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Aperture Neuro, Vol 6 (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.52294/001c.165884","doi":"https://doi.org/10.52294/001c.165884","is_oa":true,"landing_page_url":"https://doi.org/10.52294/001c.165884","pdf_url":"https://apertureneuro.org/article/165884.pdf","source":{"id":"https://openalex.org/S4387281425","display_name":"Aperture Neuro","issn_l":"2957-3963","issn":["2957-3963"],"is_oa":true,"is_in_doaj":true,"is_core":true,"listed_in":["cwts-core","doaj","jufo-1"],"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Aperture Neuro","raw_type":"journal-article"},"sustainable_development_goals":[],"study_designs":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320315885","display_name":"Australian Government","ror":"https://ror.org/0314h5y94"},{"id":"https://openalex.org/F4320320966","display_name":"University of Sydney","ror":"https://ror.org/0384j8v12"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W7125710607.pdf","grobid_xml":"https://content.openalex.org/works/W7125710607.grobid-xml"},"referenced_works_count":94,"referenced_works":["https://openalex.org/W935067513","https://openalex.org/W1026628557","https://openalex.org/W1570428653","https://openalex.org/W1684804779","https://openalex.org/W1788489224","https://openalex.org/W1899742492","https://openalex.org/W1978720077","https://openalex.org/W1980059978","https://openalex.org/W1992265439","https://openalex.org/W2001696757","https://openalex.org/W2004293194","https://openalex.org/W2011301426","https://openalex.org/W2039738625","https://openalex.org/W2055655674","https://openalex.org/W2064358322","https://openalex.org/W2076183352","https://openalex.org/W2082240739","https://openalex.org/W2083461908","https://openalex.org/W2087923797","https://openalex.org/W2101588680","https://openalex.org/W2123983635","https://openalex.org/W2127178030","https://openalex.org/W2127890285","https://openalex.org/W2130017384","https://openalex.org/W2132554074","https://openalex.org/W2134820284","https://openalex.org/W2172463224","https://openalex.org/W2402346616","https://openalex.org/W2517818012","https://openalex.org/W2556879144","https://openalex.org/W2558876218","https://openalex.org/W2613795476","https://openalex.org/W2742230759","https://openalex.org/W2767027378","https://openalex.org/W2790859007","https://openalex.org/W2797660976","https://openalex.org/W2811480054","https://openalex.org/W2896587207","https://openalex.org/W2922011905","https://openalex.org/W2924675021","https://openalex.org/W2939926176","https://openalex.org/W2951617899","https://openalex.org/W2977883299","https://openalex.org/W2980374675","https://openalex.org/W2999061069","https://openalex.org/W3010641024","https://openalex.org/W3035965352","https://openalex.org/W3041732067","https://openalex.org/W3048423161","https://openalex.org/W3048792637","https://openalex.org/W3087420426","https://openalex.org/W3091722552","https://openalex.org/W3108978982","https://openalex.org/W3119684383","https://openalex.org/W3138257762","https://openalex.org/W3150601816","https://openalex.org/W3158596096","https://openalex.org/W3160608437","https://openalex.org/W3161452490","https://openalex.org/W3173485414","https://openalex.org/W3196689162","https://openalex.org/W4223944940","https://openalex.org/W4225871921","https://openalex.org/W4286492093","https://openalex.org/W4293434822","https://openalex.org/W4302362454","https://openalex.org/W4307494802","https://openalex.org/W4310089707","https://openalex.org/W4310496844","https://openalex.org/W4313558986","https://openalex.org/W4317389014","https://openalex.org/W4360999576","https://openalex.org/W4365139901","https://openalex.org/W4366463217","https://openalex.org/W4378417152","https://openalex.org/W4380840027","https://openalex.org/W4382239587","https://openalex.org/W4385727401","https://openalex.org/W4387116062","https://openalex.org/W4392562000","https://openalex.org/W4395002462","https://openalex.org/W4396916382","https://openalex.org/W4399325953","https://openalex.org/W4400582117","https://openalex.org/W4403468700","https://openalex.org/W4404140361","https://openalex.org/W4404595672","https://openalex.org/W4410077456","https://openalex.org/W4411789562","https://openalex.org/W4412150443","https://openalex.org/W4415073375","https://openalex.org/W6893178115","https://openalex.org/W6893660513","https://openalex.org/W7123442395"],"related_works":["https://openalex.org/W2891940875","https://openalex.org/W3108978982","https://openalex.org/W2995467585","https://openalex.org/W4362453645","https://openalex.org/W3087029637","https://openalex.org/W3110904212","https://openalex.org/W2402386448","https://openalex.org/W6959911190","https://openalex.org/W2921134818","https://openalex.org/W2954301778"],"abstract_inverted_index":{"Recent":[0],"years":[1],"have":[2],"seen":[3],"an":[4,63],"expanding":[5],"repertoire":[6],"of":[7,18,134,142,188],"code-based":[8],"tools":[9],"for":[10,26,41,79,88,110,157],"visualizing":[11,81],"neuroimaging":[12],"data,":[13,112],"promoting":[14],"reproducibility":[15],"and":[16,36,44,53,70,76,94,97,175,179,185],"interpretability":[17],"brain-mapping":[19],"findings.":[20],"However,":[21],"most":[22],"open-source":[23,64],"visualization":[24,150,187],"packages":[25],"the":[27,33,37,42,89,95,106,131,139,180,192],"human":[28],"brain":[29,149,167],"are":[30,46,103],"geared":[31],"toward":[32],"cerebral":[34],"cortex,":[35],"comparatively":[38],"fewer":[39],"options":[40],"subcortex":[43,90],"cerebellum":[45],"limited":[47],"in":[48,67,123,145],"scope":[49],"(i.e.,":[50],"atlas":[51],"support)":[52],"flexibility.":[54],"We":[55],"address":[56],"this":[57],"critical":[58],"gap":[59],"by":[60,105],"introducing":[61],"subcortex_visualization,":[62],"package":[65,109],"offered":[66],"both":[68],"Python":[69],"R,":[71],"that":[72],"provides":[73],"a":[74,124,146,154],"unified":[75],"accessible":[77],"framework":[78],"programmatically":[80],"non-cortical":[82,143],"data":[83,190],"across":[84,121],"many":[85],"popular":[86],"atlases":[87,122,144,174],"(including":[91],"thalamic":[92],"nuclei":[93],"brainstem)":[96],"cerebellum.":[98],"These":[99],"two-dimensional":[100,126],"vector-based":[101,148,162],"visuals":[102],"inspired":[104],"ggseg":[107],"R":[108],"cortical":[111,193],"which":[113],"implements":[114],"standardized":[115],"rendering":[116],"conventions":[117],"to":[118,130,159,172],"facilitate":[119],"comparison":[120],"vectorized":[125,132],"format.":[127],"In":[128],"addition":[129],"versions":[133],"twelve":[135],"atlases\u2014to":[136],"our":[137],"knowledge,":[138],"largest":[140],"collection":[141],"single":[147],"toolbox\u2014we":[151],"also":[152],"provide":[153],"step-by-step":[155],"tutorial":[156],"users":[158],"generate":[160],"custom":[161],"visualizations":[163],"from":[164],"any":[165],"given":[166],"segmentation,":[168],"enabling":[169],"flexible":[170],"extension":[171],"new":[173],"structures.":[176],"Collectively,":[177],"subcortex_visualization":[178],"accompanying":[181],"documentation":[182],"support":[183],"reproducible":[184],"interpretable":[186],"region-level":[189],"below":[191],"mantle.":[194]},"counts_by_year":[{"year":2026,"cited_by_count":6}],"updated_date":"2026-11-09T13:22:03.289127","created_date":"2026-01-27T00:00:00"}
